Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00627 and BPUM_0324
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:25
# Commandline: needle
# -asequence dna-align/BSNT_00627___srfAD.1.24716.seq
# -bsequence dna-align/BPUM_0324.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00627___srfAD-BPUM_0324.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00627___srfAD-BPUM_0324.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00627___srfAD
# 2: BPUM_0324
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity: 465/837 (55.6%)
# Similarity: 465/837 (55.6%)
# Gaps: 204/837 (24.4%)
# Score: 1124.0
#
#
#=======================================
BSNT_00627___ 1 ATGAGCCAACTCTTCAAATCATTTGATGCGTCGGAAAAAACGCAG----- 45
||||..||..|.||.|||.|.||||| ||||||..|||
BPUM_0324 1 ATGAATCATTTATTTAAAACCTTTGA--------AAAAAAATCAGATCTT 42
BSNT_00627___ 46 ------CTCATCTGTTTTCCGTTTGCTGGCGGCTACTCGGCGTCGTTTCG 89
||.||.||||||||.|||||.|||||.||.||.||.||||..||
BPUM_0324 43 ATTCAACTTATTTGTTTTCCTTTTGCAGGCGGTTATTCCGCCTCGTACCG 92
BSNT_00627___ 90 CCCTCTCCATGCTTTTTTGCAGG-----------GGGAGTGCGAGATGCT 128
||| ||||||| | ||.|.||| .||.| |
BPUM_0324 93 CCC-------GCTTTTT-----GAACAACTAAAAGGCACTGC-CGAAG-T 128
BSNT_00627___ 129 C---GCTGCCGAGCCGCCGGGACACGGCACGAATCAAACGTCA-GCCATT 174
| ||.||.|||||.||.||.||.||.||.|||| ||| |||
BPUM_0324 129 CACAGCAGCAGAGCCCCCAGGTCATGGAACCAATC-----TCATGCC--- 170
BSNT_00627___ 175 GAGGATCTCGAA--GAGC--TGACAGATT--------TGTACAAGCAAG- 211
.|||||| |||| ||||.|||| |.|||||..|||
BPUM_0324 171 -----GCTCGAAACGAGCATTGACCGATTGGCTGAGCTATACAAAGAAGG 215
BSNT_00627___ 212 -----------AACTGAACCTTCGCCCTGATCGGCCGTTTGTGCTGTTCG 250
|.|||||| ||.||.|||.|.|||||.|
BPUM_0324 216 GCTCATGGGCAACCTGAAC------------CGTCCATTTATCCTGTTTG 253
BSNT_00627___ 251 GACACAGTATGGGCGGAATGATCACCTTCAGGCTGGCGCAAAAGC---TT 297
||||....|||||.|||.|..||...|..||..||.||| ||| |.
BPUM_0324 254 GACATTCCATGGGAGGACTTGTCGTGTATAGATTGACGC---AGCTATTA 300
BSNT_00627___ 298 GAGCGTGAGGGCATCTTTCC----GCAGGCGGTTATCATTTCTGCAATCC 343
||..|.||.||..|.|.||| ||||.|| |.|||||.||.||.|
BPUM_0324 301 GAAAGGGAAGGGGTTTATCCTGTAGCAGTCG----TGATTTCGGCTATTC 346
BSNT_00627___ 344 AGCCGCCTCATATTCAGCGGAAGAAAGTGTCCCACCTGCCTGATGATCAG 393
|||||||.||.|...|.||..|||...||.||||..|..|..|||| ||
BPUM_0324 347 AGCCGCCGCAAACAAAACGACAGATCCTGACCCATTTATCGAATGA--AG 394
BSNT_00627___ 394 --TTTCTCGATCATATTATCCAATTAGGCGGAATGCCCGCAGAG--CTTG 439
|||.|..|.||||||..|.||.|.|||||.||.| ||.|| .||.
BPUM_0324 395 CATTTGTTCAGCATATTGCCGAAATGGGCGGGATAC---CAAAGGAATTA 441
BSNT_00627___ 440 TT-GAAAATAA---------GGAGGTCATGTCCTT--TTTCCTGCCTTCT 477
|| |||||.|| ||| || |||.| |||.||.
BPUM_0324 442 TTAGAAAACAAACCAATGATGGA----------TTACTTTAC-GCCGTCC 480
BSNT_00627___ 478 TTCCGATCAGATTACCGGGCTCTTGAACAATTTGAGCTTTACGATCTGGC 527
||.||..||||.||.|.|||.||.|||...||..|||...|.||||
BPUM_0324 481 TTACGTGCAGACTATCAGGCGCTGGAAACCTTCCAGCACAAAGATC---- 526
BSNT_00627___ 528 CCAGATCCA--GTCG-----CCTGTTCATGTCTTTAACGGGCTTGATGAT 570
.||||| .||| ||.|||.||.|.||.||.||.....|.|||
BPUM_0324 527 ---AATCCATCATCGAAACACCCGTTTATTTATTCAATGGAACACAAGAT 573
BSNT_00627___ 571 AAAAAATGCATACGAGATG----CGGAAGGCTGGAAGAAGTGGGCAAAAG 616
.||||||||||.|.||||| |||..|||||..| |||||||||.
BPUM_0324 574 GAAAAATGCATGCAAGATGCAAACGGTTGGCTGCCA----TGGGCAAAAA 619
BSNT_00627___ 617 ACATC--ACATTCCATCAATTT-GACGGAGGACACATGT---TCCTGCTG 660
.|||| || .||||||||| ||.||.||.||||||| || .
BPUM_0324 620 CCATCGAAC---GCATCAATTTCGAAGGGGGGCACATGTATATC-----A 661
BSNT_00627___ 661 TCACAAAC--GGAAGAAGTCGCAGAACGGAT-----TTTTG--CGATCTT 701
.||||.|| .|||....|||||||||.||| ||.|| |||||||
BPUM_0324 662 ACACACACCTCGAATCCTTCGCAGAACAGATGAGACTTGTGATCGATCTT 711
BSNT_00627___ 702 G-----AATCAGCATCCGATCATTC---AACCGTGA- 729
| ||.||.|| |||| ||.|.|.|
BPUM_0324 712 GCAGGCAAACAACA-------ATTCATAAAACATTAA 741
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