Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00569 and BPUM_0301
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:22
# Commandline: needle
# -asequence dna-align/BSNT_00569___ycgN.1.24716.seq
# -bsequence dna-align/BPUM_0301___ycgN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00569___ycgN-BPUM_0301___ycgN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00569___ycgN-BPUM_0301___ycgN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00569___ycgN
# 2: BPUM_0301___ycgN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1579
# Identity: 1197/1579 (75.8%)
# Similarity: 1197/1579 (75.8%)
# Gaps: 62/1579 ( 3.9%)
# Score: 4389.0
#
#
#=======================================
BSNT_00569___ 1 ATGACAACACCTTACAAACACGAGCCATTCACAAATTT---CCAAGATCA 47
||||||||||||||||||||.||.||||||||..|||| |||.||..|
BPUM_0301___y 1 ATGACAACACCTTACAAACATGAACCATTCACGGATTTTAGCCAGGAAGA 50
BSNT_00569___ 48 AAACAACGTGGAAGCGTTTAAAAAAGCGCTTGCGACA-GTAAGCGAATAT 96
||||..| .||||||||.||.|||| .||..||.| ||||..|||...
BPUM_0301___y 51 AAACCGC---AAAGCGTTTGAACAAGC-ATTAGGAAAGGTAACAGAAACA 96
BSNT_00569___ 97 TTAGGAAAAGACTATCCGCTTGTCATTAACGGCGAGAGAGTGGAAACGGA 146
.|.||..||..|||||||||.||.|||||.||.||.|||.|.||||||.|
BPUM_0301___y 97 CTGGGTCAAACCTATCCGCTCGTGATTAATGGAGAAAGAATCGAAACGAA 146
BSNT_00569___ 147 AGCGAAAATCGTTTCAATCAACCCGGCTGATAAA-GAAGAAGTCGTCGG- 194
||...||||.||.||.|||||.||.|| ||.||| ||.|||||.||.||
BPUM_0301___y 147 AGACCAAATTGTCTCGATCAATCCAGC-GAAAAAGGATGAAGTTGTTGGA 195
BSNT_00569___ 195 -CCGAGTGTCAAAAGC-------GTCTCAAGAGCACGCTGAGCAAGCGAT 236
|| ||.|||||.|| | ||||| ||.||.||||||.|
BPUM_0301___y 196 ACC--GTATCAAAGGCAGGAAAAG----AAGAG---GCAGAACAAGCGGT 236
BSNT_00569___ 237 TCAAGCGGCTGCAAAAGCATTTGAAGAGTGGAGATACACGTCTCCTGAAG 286
|||.||.||.||.||||||||||||...|||.|.||.||.|||||.||||
BPUM_0301___y 237 TCAGGCTGCGGCGAAAGCATTTGAAACTTGGCGCTATACTTCTCCAGAAG 286
BSNT_00569___ 287 AGAGAG-CGGCTGTCCTGTTCCGCGCTGCTGCCAAAGTCCGCAGAAGAAA 335
|.|||| |.|| ||..|.|||||.|||||.||.||..|.|||.|.|.|||
BPUM_0301___y 287 AAAGAGCCAGC-GTTATTTTCCGTGCTGCGGCAAATATTCGCCGTAAAAA 335
BSNT_00569___ 336 ACATGAATTCTCAGCTTTGCTTGTGAAAGAAGCAGGAAAGCCTTGGAACG 385
.|||||.|..|||||..|.|||||.|||||||||||.|||||||||||.|
BPUM_0301___y 336 GCATGAGTATTCAGCCCTTCTTGTTAAAGAAGCAGGTAAGCCTTGGAATG 385
BSNT_00569___ 386 AGGCGGATGCCGATACGGCTGAAGCGATTGACTTCATGGAGTATTATGCA 435
|.|||||.||.|||||.||.||||||||.|||||..|.||.||||||||.
BPUM_0301___y 386 AAGCGGACGCAGATACAGCAGAAGCGATCGACTTTCTTGAATATTATGCT 435
BSNT_00569___ 436 CGTCAAATGATCGAACTGGCAAAAGGCAAACCGGTCAACAGCCGTGAAGG 485
|||||||||.|.||.|||||.|||||||||||.||.||||||||||||||
BPUM_0301___y 436 CGTCAAATGCTGGAGCTGGCGAAAGGCAAACCAGTGAACAGCCGTGAAGG 485
BSNT_00569___ 486 CGAGAAAAACCAATATGTATACACGCCGACTGGAGTGACAGTCGTTATCC 535
.||..|.||.|||||.||||||||.||.|||||.||||||.||||.||.|
BPUM_0301___y 486 AGAACACAATCAATACGTATACACCCCAACTGGCGTGACACTCGTCATTC 535
BSNT_00569___ 536 CGCCTTGGAACTTCTTGTTTGCGATCATGGCAGGCACAACAGTGGCGCCG 585
||||.|||||||||||||||||.||.||||||||.||||||||.||.||.
BPUM_0301___y 536 CGCCGTGGAACTTCTTGTTTGCTATTATGGCAGGAACAACAGTAGCACCA 585
BSNT_00569___ 586 ATCATTACTGGAAACACAGTGGTTCTGAAACCTGCGAGTGCTACACCTGT 635
|||.||||.||.||||||||.||..|.||||||||.|||||.||.|||||
BPUM_0301___y 586 ATCGTTACAGGGAACACAGTTGTCTTAAAACCTGCAAGTGCAACTCCTGT 635
BSNT_00569___ 636 TATTGCAGCAAAATTTGTTGAGGTGCTTGAAGAGTCCGGATTGCCAAAAG 685
.|||||.|||...|||||.||.|.||||||..|..|.||..|.|||||.|
BPUM_0301___y 636 CATTGCGGCACGTTTTGTGGAAGAGCTTGAGCAAGCAGGTCTTCCAAAGG 685
BSNT_00569___ 686 GCGTAGTCAACTTTGTTCCGGGAAGCGGAGCGGAAGTAGGCGACTATCTT 735
|.||.||.||||||||.||.||.||||||||.|||||.||.||.|| |||
BPUM_0301___y 686 GTGTGGTGAACTTTGTACCAGGGAGCGGAGCTGAAGTTGGAGATTA-CTT 734
BSNT_00569___ 736 -GTTGACCATCCGAAAACAAGCCTTATCACATTTACGGGATCAAGAGAAG 784
||.||.||.||||||||||||||.||.|||||.||.|||||||||||||
BPUM_0301___y 735 AGTCGATCACCCGAAAACAAGCCTGATTACATTCACTGGATCAAGAGAAG 784
BSNT_00569___ 785 TTGGTACGAGAATTTTCGAACGCGCGGCGAAGGTTCAGCCAGGCCAGCAG 834
|.||.||..|.||.||.||||||||.||.||.||.||||||||.||||||
BPUM_0301___y 785 TAGGGACACGTATCTTTGAACGCGCAGCTAAAGTACAGCCAGGTCAGCAG 834
BSNT_00569___ 835 CACTTTAAGCGTGTCATCGCTGAAATGGGCGGTAAAGATACGGTTGTTGT 884
||.||.|||||||||||.|||||||||||||||||.|||||.||.|||||
BPUM_0301___y 835 CATTTAAAGCGTGTCATTGCTGAAATGGGCGGTAAGGATACAGTGGTTGT 884
BSNT_00569___ 885 CGATGAGGATGCGGACATTGAATTAGCGGCTCAAT-CGATCTTTACTTCA 933
.|||||||||||.|||.|.|||||||||||| ||| |.||.||.||.|||
BPUM_0301___y 885 AGATGAGGATGCAGACGTCGAATTAGCGGCT-AATGCTATTTTCACATCA 933
BSNT_00569___ 934 GCATTCGGCTTTGCGGGACAAAAATGCTCTGCAGGTTCACGTGCAGTAGT 983
||.|||||.|||.|.||.||.|||||.||.||.||.||.||.||.||.||
BPUM_0301___y 934 GCCTTCGGTTTTTCAGGTCAGAAATGTTCAGCTGGATCTCGGGCTGTCGT 983
BSNT_00569___ 984 TCATGAAAAAGTGTATGATCAAGT-ATTAGAGCGTGTCATTGAAATTACG 1032
|||.|||||..||||||||||||| ||| |||||.||.|..|||||.||.
BPUM_0301___y 984 TCACGAAAAGCTGTATGATCAAGTGATT-GAGCGAGTGAAGGAAATCACA 1032
BSNT_00569___ 1033 GAATCAAAAGTAACAGCTAAACCTGACAGTGCAGATGTTTATATGGGACC 1082
|||.|.|||..||||||.||.|||.....|||.|||||.||.|||||.||
BPUM_0301___y 1033 GAAACGAAAACAACAGCGAACCCTCTTTCTGCGGATGTCTACATGGGTCC 1082
BSNT_00569___ 1083 TGTCATTGACCAAG-GTTCTTATGATAAAATTATGAG-CTATATTGAGAT 1130
|||||||||.|||| ||.||| |||.||.||.| .|| .|||||.||..|
BPUM_0301___y 1083 TGTCATTGATCAAGCGTCCTT-TGACAAGATCA-CAGATTATATCGAAGT 1130
BSNT_00569___ 1131 CGGAAAACAGGAAGGGCGTTTAGTAAGCGGCGGTACCGGTGATGATTCGA 1180
.||.||.||||||||.||.|||||.|..|||||.||..||||||||.||.
BPUM_0301___y 1131 GGGTAAGCAGGAAGGCCGCTTAGTCACTGGCGGAACGAGTGATGATACGG 1180
BSNT_00569___ 1181 AAGGATACTTCAT----CAAACCGACGATCTTCGCTGACCTTGATCCGAA 1226
||||||||||||| |.||||| |.||.||.||.|||||.|
BPUM_0301___y 1181 AAGGATACTTCATTCACCCAACCG----TTTTTGCAGATCTTGAGC---- 1222
BSNT_00569___ 1227 AGCAA-GACTC-----ATGCAGGAAGAAATTTTCGGACCTGTCGTTGCAT 1270
||| |.||| |||||.||||||||.||.|||||||||.|.||.|
BPUM_0301___y 1223 --CAACGTCTCGCTTGATGCAAGAAGAAATCTTTGGACCTGTCTTGGCCT 1270
BSNT_00569___ 1271 TTTGTAAAGTGTC-AGACTTTGATGAAGCTTTAGAAGTGGCAAACAATAC 1319
|.|..|||||||| || |||||||||.||..|.|||||.||.|||||.||
BPUM_0301___y 1271 TCTCGAAAGTGTCTAG-CTTTGATGAGGCACTTGAAGTAGCCAACAACAC 1319
BSNT_00569___ 1320 TGAATATGGTTTGACAGGCGCGGTTATCACAAACAACCGCAAGCACATCG 1369
.|||||||||||||||||.||.||.||.||.||.||.||..|.||.|||.
BPUM_0301___y 1320 GGAATATGGTTTGACAGGTGCTGTCATTACCAATAATCGGGATCATATCA 1369
BSNT_00569___ 1370 AGCGTGCGAAACAGGAATTCCATGTCGGAAACCTATACTTCAACCGCAAC 1419
|.||||||||.|||||.||||||||.||.||.||.|||||.|||||.|||
BPUM_0301___y 1370 ATCGTGCGAAGCAGGAGTTCCATGTAGGGAATCTCTACTTTAACCGTAAC 1419
BSNT_00569___ 1420 TGTACAGGTGCTATCGTCGGCTACCATCCGTTTGGCGGCTTCAAAATGTC 1469
||.|||||.||.|||||.||.|||||.||.||.|||||.|||||||||||
BPUM_0301___y 1420 TGCACAGGAGCCATCGTAGGATACCACCCATTCGGCGGATTCAAAATGTC 1469
BSNT_00569___ 1470 GGGAACGGATTCAAAAGCAGGCGGGCCGGATTACTTGGCTCTGCATATGC 1519
.|||||.|||||||||||||||||.||.||||||.|.|||||.||.||||
BPUM_0301___y 1470 AGGAACCGATTCAAAAGCAGGCGGTCCAGATTACCTAGCTCTACACATGC 1519
BSNT_00569___ 1520 AGGCAAAAACAATCAGTGAAATGTTCTAA 1548
||||||||||.||.|||||||||||.|||
BPUM_0301___y 1520 AGGCAAAAACGATTAGTGAAATGTTTTAA 1548
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