Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00558 and BPUM_0290

See Amino acid alignment / Visit BSNT_00558 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:22
# Commandline: needle
#    -asequence dna-align/BSNT_00558___aroK.1.24716.seq
#    -bsequence dna-align/BPUM_0290___aroK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00558___aroK-BPUM_0290___aroK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00558___aroK-BPUM_0290___aroK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00558___aroK
# 2: BPUM_0290___aroK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 588
# Identity:     394/588 (67.0%)
# Similarity:   394/588 (67.0%)
# Gaps:          57/588 ( 9.7%)
# Score: 1260.5
# 
#
#=======================================

BSNT_00558___      1 ATGAACGCTAAAC----GAGCCATCCCAGTAAGAGAAAGAAATATCGTCC     46
                     |||||    ||.|    |||..|||||.||||||.||.|.|||||.||.|
BPUM_0290___a      1 ATGAA----AATCAATAGAGAAATCCCTGTAAGACAACGGAATATTGTTC     46

BSNT_00558___     47 TGATCGGATTCATGGGTGTAGGAAAAACAACAATCGGCCAATTGGTCGCT     96
                     |.||.||.||.||||||||.||.||||||||.||.||.||.|||||.|||
BPUM_0290___a     47 TCATTGGCTTTATGGGTGTTGGGAAAACAACCATTGGACAGTTGGTTGCT     96

BSNT_00558___     97 AAAAAATTATATAGAGATTTTATTGATATTGACCAGCAGATCGAAAAGGA    146
                     |||||..|||||.||||||||||||||.|.||.|||.||||.||.||..|
BPUM_0290___a     97 AAAAAGCTATATCGAGATTTTATTGATGTCGATCAGGAGATTGAGAAAAA    146

BSNT_00558___    147 TTTCAATATGTCAATTCCTGAGATATTTGAGAAAAAGGGAGAAGACTTTT    196
                     .|.|||.|||.|.|||||.|||||.|||.||.||||.|||||||..||.|
BPUM_0290___a    147 ATACAACATGACGATTCCAGAGATGTTTCAGCAAAAAGGAGAAGCATTCT    196

BSNT_00558___    197 TCCGGAAAACGGAGAAGGAATATATTTTAGACATCTGCCATCATAAACGA    246
                     ||.|..|..|.||.|||||.|||||..|.||..|.||..|.||||.||..
BPUM_0290___a    197 TCAGACAGGCTGAAAAGGATTATATCGTCGATTTATGTGAACATACACAG    246

BSNT_00558___    247 TTCAAAATCGTATCTCTGGGCGGGGGATCTTTTAAACAAGAAGAAATCAG    296
                     .|.||.|||||.||.||.||.||.||..|.||.|||||.|||||||||  
BPUM_0290___a    247 CTAAAGATCGTCTCACTTGGAGGCGGTGCATTCAAACAGGAAGAAATC--    294

BSNT_00558___    297 AAA-----TTGCTGTCTGGAAAACTGTCTCGTGCTTCATCTGGACCTGTC    341
                     |||     .||||   ||.||.|.|||...||.|||...||.|||||.||
BPUM_0290___a    295 AAACGCGCCTGCT---TGAAACATTGTACGGTTCTTTTCCTTGACCTATC    341

BSNT_00558___    342 ATGGGAGAACTGGAAGCAGCGCGC-GGATTTATTGATCGAAAGCCGCCCT    390
                     .||||||||.||||||||||| || .|||.|.||.||.||||..||.|||
BPUM_0290___a    342 TTGGGAGAATTGGAAGCAGCG-GCTTGATATTTTAATTGAAAATCGTCCT    390

BSNT_00558___    391 GTACTGCATAACCGTTCAATGGATGAAATGGAACAGCTGTTTAACGAA--    438
                     ||.||.||.|||||..|..|.|||||||||.||.||||||||.|.|||  
BPUM_0290___a    391 GTTCTTCACAACCGGACGCTTGATGAAATGAAAGAGCTGTTTGAAGAACG    440

BSNT_00558___    439 -----AGAAAAGTCATTTATGACAAGCACAATTCAAAAGTGGCAACAGA-    482
                          ||       ||||||......||.||.||.|.|||||.|||||| 
BPUM_0290___a    441 CCGGGAG-------ATTTATTCTCTTCATAACTCCAGAGTGGAAACAGAT    483

BSNT_00558___    483 CAACCTTTCCCCGGAAGAG---------GTTGCCGATTACATTGTTGAGA    523
                     ||   |||       ||||         ||||||.||||.|||||.||.|
BPUM_0290___a    484 CA---TTT-------AGAGGCTGAGGAAGTTGCCAATTATATTGTGGACA    523

BSNT_00558___    524 CATTAAAAATTGGCTGGGATCTTTATCAGCCGATGTAA    561
                     ||.|.||..|||||||||||.|.|||   .|.|..|||
BPUM_0290___a    524 CACTCAAGCTTGGCTGGGATTTATAT---TCCAAATAA    558


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