Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01789 and BPUM_0283

See Amino acid alignment / Visit BSNT_01789 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_01789___glcP.1.24716.seq
#    -bsequence dna-align/BPUM_0283___glcP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01789___glcP-BPUM_0283___glcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01789___glcP-BPUM_0283___glcP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01789___glcP
# 2: BPUM_0283___glcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1409
# Identity:     730/1409 (51.8%)
# Similarity:   730/1409 (51.8%)
# Gaps:         409/1409 (29.0%)
# Score: 1463.0
# 
#
#=======================================

BSNT_01789___      1 ATGTTAAGAGGGACATATTT--ATTTGGATATG-CTTT--CTTTTTTACA     45
                     |||..||.||     |||||  .|||||.|.|| ||||  .|||||||  
BPUM_0283___g      1 ATGAAAAAAG-----TATTTTATTTTGGCTGTGTCTTTTATTTTTTTA--     43

BSNT_01789___     46 GTAGGCATTATCCATATATCAACAGGGAGTTTGACACCATTTCTATTAGA     95
                      |.||.|..||.|||.|.|.....||.||.||.||.||.|.|   |||..
BPUM_0283___g     44 -TTGGGACCATTCATGTGTTTTTTGGCAGCTTAACTCCTTAT---TTACT     89

BSNT_01789___     96 GTCTTTTAACAAGACAACAG---------ATGATAT--TTCGGTCATAAT    134
                     |.||..|.||  ||.||..|         ||.||.|  ||      ||||
BPUM_0283___g     90 GGCTAGTTAC--GATAAGGGTCCCGGGGAATTATCTTCTT------TAAT    131

BSNT_01789___    135 CTTCTTTCAGTTTACCGGATTTCTAAGCGGAGTAT---TAATCGCACCGT    181
                     |||.||||||||||..||.|||.|.|..||.|| |   |.||| |.||.|
BPUM_0283___g    132 CTTTTTTCAGTTTATTGGTTTTTTGACAGGGGT-TCTGTTATC-CCCCAT    179

BSNT_01789___    182 TAATGATTAAGAAATACAGTCATTTTAGGACACT--------TA-----C    218
                     ...||  |.||.||.|.||.|    ||.|.|.||        ||     |
BPUM_0283___g    180 CCTTG--TGAGGAAAAAAGGC----TATGGCGCTGTTCTGACTATGGGGC    223

BSNT_01789___    219 TTTAGCT-----TTG--ACAATAATGCTTGCAGCGTTAAGCATCTTTTTT    261
                     |||.|||     |||  .||.|..||||||        .||    ||||.
BPUM_0283___g    224 TTTTGCTGATGATTGGATCACTTCTGCTTG--------GGC----TTTTG    261

BSNT_01789___    262 CTAACTAAGGATTGGT-ATTATATTATTGTAATGGC----TTTTCTCTTA    306
                     .|..|   ||..|||| |    |.|.||||..||||    ||||.|||| 
BPUM_0283___g    262 GTGCC---GGGCTGGTCA----ACTCTTGTGCTGGCAGGTTTTTTTCTT-    303

BSNT_01789___    307 GGATATGGGGCAGGCACATTAGAAACGACAGTTGGTTCATTTGTTATTGC    356
                     ||...|||.|||||||...|.||.||.||||..||..|.|.||       
BPUM_0283___g    304 GGCAGTGGAGCAGGCAGTCTTGAGACAACAGCAGGAGCGTATG-------    346

BSNT_01789___    357 TAATTTCGA----AAGTAATGCAGAA-AAAATGAGTAAGCTGGAAGTTCT    401
                     |.|||||||    ||..|.||| ||| ..|||.||.|...||||.||..|
BPUM_0283___g    347 TGATTTCGATGGCAAACAGTGC-GAAGCGAATCAGCATCATGGAGGTCTT    395

BSNT_01789___    402 CTTTGGATTAG--GCGCTTTATCTTTCCCATTATTAATTAATTCCTTCAT    449
                     ||||||.||||  |||||                  ||||.||||     
BPUM_0283___g    396 CTTTGGGTTAGGAGCGCT------------------ATTATTTCC-----    422

BSNT_01789___    450 AGATATCAATAACTGGT--TTTTACCGTATTACTGTATATTCACC-----    492
                                |||.||  ||||||    |.||||     |||.|     
BPUM_0283___g    423 -----------ACTTGTGATTTTAC----TGACTG-----TCAACGAACA    452

BSNT_01789___    493 ----------------TTTTTATTCGTCCTATTCGTAGGGTG-GTTAATT    525
                                     |||||||   |.|.|.||    |||| ..|||.|
BPUM_0283___g    453 GACGTGGCACTATGTGTTTTTAT---TTCAAGTC----GGTGCACTAACT    495

BSNT_01789___    526 TTCTTGTCCAAGAACCGAAAGTACGCTAAGAATGCC---AACCAACAAGT    572
                     |||||         ||    .||.|||..|.||..|   .|..|||||.|
BPUM_0283___g    496 TTCTT---------CC----TTATGCTTTGGATTGCTTTTATGAACAAAT    532

BSNT_01789___    573 GACCTTTC-----CAGATGGAGGAGCATTTCAATACTTTATAGGAGATAG    617
                     ..||  ||     ||||||       |||||  |.|||...|.|.|.| |
BPUM_0283___g    533 TGCC--TCGTGGACAGATG-------ATTTC--TCCTTCCAATGGGGT-G    570

BSNT_01789___    618 AAAAAA----------------ATCAAAGCAAT-TAGGCTTTTTTGT---    647
                     ||||||                |||.||.|||| .|..|.||.|.||   
BPUM_0283___g    571 AAAAAACCGTCCTTACTTGTTGATCGAAACAATCGAATCATTGTGGTGAT    620

BSNT_01789___    648 ----ATTT--TTTGCTTTCCTATATGCTGGAATTGAAACAAATTTTGCCA    691
                         ||||  |||||.||..|.||.||.||.||||||||.||.|||||.|
BPUM_0283___g    621 CATGATTTGCTTTGCCTTTTTCTACGCAGGGATTGAAACGAACTTTGCGA    670

BSNT_01789___    692 ACTTTTTACCTTCAATCATGATAAACCA------AGACAATGAACAAATT    735
                     |||||||.||.||.||||||.|..|..|      ||||        ||||
BPUM_0283___g    671 ACTTTTTGCCGTCGATCATGCTGGAGAAGGGAGGAGAC--------AATT    712

BSNT_01789___    736 AG----TCTTATAAGTGTCTCCTTTTTCTGGGTAGGGATCATCATAGGAA    781
                     .|    ||||...|  ||||||..|||||||..||..||..||||.||.|
BPUM_0283___g    713 GGGGTCTCTTTGCA--GTCTCCACTTTCTGGACAGCCATTGTCATCGGCA    760

BSNT_01789___    782 GAATATTGATTG-GTTTAGTAAGTAGAAGGCTCGAT--TTTTCCAAATAC    828
                     |||...|||||| |   ||.||  ||.|     |||  |||.|     ||
BPUM_0283___g    761 GAACCGTGATTGCG---AGAAA--AGCA-----GATCATTTGC-----AC    795

BSNT_01789___    829 CTCCTTTTTAGCTGTAGTTGTTTAATTGTTTTGT----------TGATTG    868
                     |        .|||| .|||.||||| .|.|..||          ||||| 
BPUM_0283___g    796 C--------CGCTG-CGTTTTTTAA-AGCTAAGTGCAGCACTCATGATT-    834

BSNT_01789___    869 C--CTTCTC-TTATATAAG------TAACCCA-AT-AC--TTCAATTGGG    905
                     |  ||.||| |.||.|..|      .|||.|| || ||  .|||    |.
BPUM_0283___g    835 CTGCTGCTCGTGATCTTTGCGCTGACAACACACATCACCGCTCA----GC    880

BSNT_01789___    906 TGGT----ACATTTTTGATTGGCCTAAGTATAGCGGGTATATTTCCCATT    951
                     ||.|    |..|||||.||.|||||..||..|||.|||||.||.||.||.
BPUM_0283___g    881 TGCTTCTCATCTTTTTCATCGGCCTGTGTGCAGCTGGTATGTTCCCAATC    930

BSNT_01789___    952 GCTTTAAC--ACTAGCAT---CAATCATTATTCAGAAGTACGTTGACGAA    996
                     ||    ||  ||| ||||   ||.|.||.|||.|.||...|.|.|||||.
BPUM_0283___g    931 GC----ACTGACT-GCATCTGCATTAATGATTGAAAATGCCATCGACGAG    975

BSNT_01789___    997 GTTACAAGTTTATTTATTGCCTCGGCAAGTTTCGGAGGAGCGATCATCTC   1046
                     |..||.||||..||||||||..|.||||||||.||.|||||...|.|.||
BPUM_0283___g    976 GCCACGAGTTACTTTATTGCAGCCGCAAGTTTAGGCGGAGCCTGCTTGTC   1025

BSNT_01789___   1047 TTTCTTAATTGGATGGAGT-TTAAAT---CAGGA--------TACGATCT   1084
                     .|||||.||.||.|..||| ||.|||   |||||        |.|.||||
BPUM_0283___g   1026 CTTCTTGATCGGCTTTAGTCTTGAATGGGCAGGAGCAGCAAGTGCCATCT   1075

BSNT_01789___   1085 TATTAACCATGGGAATATTTACAACT--ATGGCGGTCATTCTA---GTAG   1129
                     |              |.|||.|..||  .|.||.||..|||||   |.||
BPUM_0283___g   1076 T--------------TGTTTTCGCCTTCTTAGCTGTTCTTCTATTTGCAG   1111

BSNT_01789___   1130 GT---ATT--------TC-TGTAAAGATTAGGAGAACTAAAACAGAAGAC   1167
                     .|   |||        || |||.|||            ||||.|||| ||
BPUM_0283___g   1112 CTGCGATTCAAATGAATCGTGTGAAG------------AAAAAAGAA-AC   1148

BSNT_01789___   1168 CCTATTTCACTTGAAAACAAAGCATCAAAAACACGT-GTAAATGAAA---   1213
                     |.|..|.|         |.|||||          || |..|.|||||   
BPUM_0283___g   1149 CGTTCTCC---------CCAAGCA----------GTCGGCACTGAAAGCG   1179

BSNT_01789___   1214 GAT-ACTAA   1221
                     ||| |.|||
BPUM_0283___g   1180 GATCAGTAA   1188


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