Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01789 and BPUM_0283
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_01789___glcP.1.24716.seq
# -bsequence dna-align/BPUM_0283___glcP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01789___glcP-BPUM_0283___glcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01789___glcP-BPUM_0283___glcP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01789___glcP
# 2: BPUM_0283___glcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1409
# Identity: 730/1409 (51.8%)
# Similarity: 730/1409 (51.8%)
# Gaps: 409/1409 (29.0%)
# Score: 1463.0
#
#
#=======================================
BSNT_01789___ 1 ATGTTAAGAGGGACATATTT--ATTTGGATATG-CTTT--CTTTTTTACA 45
|||..||.|| ||||| .|||||.|.|| |||| .|||||||
BPUM_0283___g 1 ATGAAAAAAG-----TATTTTATTTTGGCTGTGTCTTTTATTTTTTTA-- 43
BSNT_01789___ 46 GTAGGCATTATCCATATATCAACAGGGAGTTTGACACCATTTCTATTAGA 95
|.||.|..||.|||.|.|.....||.||.||.||.||.|.| |||..
BPUM_0283___g 44 -TTGGGACCATTCATGTGTTTTTTGGCAGCTTAACTCCTTAT---TTACT 89
BSNT_01789___ 96 GTCTTTTAACAAGACAACAG---------ATGATAT--TTCGGTCATAAT 134
|.||..|.|| ||.||..| ||.||.| || ||||
BPUM_0283___g 90 GGCTAGTTAC--GATAAGGGTCCCGGGGAATTATCTTCTT------TAAT 131
BSNT_01789___ 135 CTTCTTTCAGTTTACCGGATTTCTAAGCGGAGTAT---TAATCGCACCGT 181
|||.||||||||||..||.|||.|.|..||.|| | |.||| |.||.|
BPUM_0283___g 132 CTTTTTTCAGTTTATTGGTTTTTTGACAGGGGT-TCTGTTATC-CCCCAT 179
BSNT_01789___ 182 TAATGATTAAGAAATACAGTCATTTTAGGACACT--------TA-----C 218
...|| |.||.||.|.||.| ||.|.|.|| || |
BPUM_0283___g 180 CCTTG--TGAGGAAAAAAGGC----TATGGCGCTGTTCTGACTATGGGGC 223
BSNT_01789___ 219 TTTAGCT-----TTG--ACAATAATGCTTGCAGCGTTAAGCATCTTTTTT 261
|||.||| ||| .||.|..|||||| .|| ||||.
BPUM_0283___g 224 TTTTGCTGATGATTGGATCACTTCTGCTTG--------GGC----TTTTG 261
BSNT_01789___ 262 CTAACTAAGGATTGGT-ATTATATTATTGTAATGGC----TTTTCTCTTA 306
.|..| ||..|||| | |.|.||||..|||| ||||.||||
BPUM_0283___g 262 GTGCC---GGGCTGGTCA----ACTCTTGTGCTGGCAGGTTTTTTTCTT- 303
BSNT_01789___ 307 GGATATGGGGCAGGCACATTAGAAACGACAGTTGGTTCATTTGTTATTGC 356
||...|||.|||||||...|.||.||.||||..||..|.|.||
BPUM_0283___g 304 GGCAGTGGAGCAGGCAGTCTTGAGACAACAGCAGGAGCGTATG------- 346
BSNT_01789___ 357 TAATTTCGA----AAGTAATGCAGAA-AAAATGAGTAAGCTGGAAGTTCT 401
|.||||||| ||..|.||| ||| ..|||.||.|...||||.||..|
BPUM_0283___g 347 TGATTTCGATGGCAAACAGTGC-GAAGCGAATCAGCATCATGGAGGTCTT 395
BSNT_01789___ 402 CTTTGGATTAG--GCGCTTTATCTTTCCCATTATTAATTAATTCCTTCAT 449
||||||.|||| ||||| ||||.||||
BPUM_0283___g 396 CTTTGGGTTAGGAGCGCT------------------ATTATTTCC----- 422
BSNT_01789___ 450 AGATATCAATAACTGGT--TTTTACCGTATTACTGTATATTCACC----- 492
|||.|| |||||| |.|||| |||.|
BPUM_0283___g 423 -----------ACTTGTGATTTTAC----TGACTG-----TCAACGAACA 452
BSNT_01789___ 493 ----------------TTTTTATTCGTCCTATTCGTAGGGTG-GTTAATT 525
||||||| |.|.|.|| |||| ..|||.|
BPUM_0283___g 453 GACGTGGCACTATGTGTTTTTAT---TTCAAGTC----GGTGCACTAACT 495
BSNT_01789___ 526 TTCTTGTCCAAGAACCGAAAGTACGCTAAGAATGCC---AACCAACAAGT 572
||||| || .||.|||..|.||..| .|..|||||.|
BPUM_0283___g 496 TTCTT---------CC----TTATGCTTTGGATTGCTTTTATGAACAAAT 532
BSNT_01789___ 573 GACCTTTC-----CAGATGGAGGAGCATTTCAATACTTTATAGGAGATAG 617
..|| || |||||| ||||| |.|||...|.|.|.| |
BPUM_0283___g 533 TGCC--TCGTGGACAGATG-------ATTTC--TCCTTCCAATGGGGT-G 570
BSNT_01789___ 618 AAAAAA----------------ATCAAAGCAAT-TAGGCTTTTTTGT--- 647
|||||| |||.||.|||| .|..|.||.|.||
BPUM_0283___g 571 AAAAAACCGTCCTTACTTGTTGATCGAAACAATCGAATCATTGTGGTGAT 620
BSNT_01789___ 648 ----ATTT--TTTGCTTTCCTATATGCTGGAATTGAAACAAATTTTGCCA 691
|||| |||||.||..|.||.||.||.||||||||.||.|||||.|
BPUM_0283___g 621 CATGATTTGCTTTGCCTTTTTCTACGCAGGGATTGAAACGAACTTTGCGA 670
BSNT_01789___ 692 ACTTTTTACCTTCAATCATGATAAACCA------AGACAATGAACAAATT 735
|||||||.||.||.||||||.|..|..| |||| ||||
BPUM_0283___g 671 ACTTTTTGCCGTCGATCATGCTGGAGAAGGGAGGAGAC--------AATT 712
BSNT_01789___ 736 AG----TCTTATAAGTGTCTCCTTTTTCTGGGTAGGGATCATCATAGGAA 781
.| ||||...| ||||||..|||||||..||..||..||||.||.|
BPUM_0283___g 713 GGGGTCTCTTTGCA--GTCTCCACTTTCTGGACAGCCATTGTCATCGGCA 760
BSNT_01789___ 782 GAATATTGATTG-GTTTAGTAAGTAGAAGGCTCGAT--TTTTCCAAATAC 828
|||...|||||| | ||.|| ||.| ||| |||.| ||
BPUM_0283___g 761 GAACCGTGATTGCG---AGAAA--AGCA-----GATCATTTGC-----AC 795
BSNT_01789___ 829 CTCCTTTTTAGCTGTAGTTGTTTAATTGTTTTGT----------TGATTG 868
| .|||| .|||.||||| .|.|..|| |||||
BPUM_0283___g 796 C--------CGCTG-CGTTTTTTAA-AGCTAAGTGCAGCACTCATGATT- 834
BSNT_01789___ 869 C--CTTCTC-TTATATAAG------TAACCCA-AT-AC--TTCAATTGGG 905
| ||.||| |.||.|..| .|||.|| || || .||| |.
BPUM_0283___g 835 CTGCTGCTCGTGATCTTTGCGCTGACAACACACATCACCGCTCA----GC 880
BSNT_01789___ 906 TGGT----ACATTTTTGATTGGCCTAAGTATAGCGGGTATATTTCCCATT 951
||.| |..|||||.||.|||||..||..|||.|||||.||.||.||.
BPUM_0283___g 881 TGCTTCTCATCTTTTTCATCGGCCTGTGTGCAGCTGGTATGTTCCCAATC 930
BSNT_01789___ 952 GCTTTAAC--ACTAGCAT---CAATCATTATTCAGAAGTACGTTGACGAA 996
|| || ||| |||| ||.|.||.|||.|.||...|.|.|||||.
BPUM_0283___g 931 GC----ACTGACT-GCATCTGCATTAATGATTGAAAATGCCATCGACGAG 975
BSNT_01789___ 997 GTTACAAGTTTATTTATTGCCTCGGCAAGTTTCGGAGGAGCGATCATCTC 1046
|..||.||||..||||||||..|.||||||||.||.|||||...|.|.||
BPUM_0283___g 976 GCCACGAGTTACTTTATTGCAGCCGCAAGTTTAGGCGGAGCCTGCTTGTC 1025
BSNT_01789___ 1047 TTTCTTAATTGGATGGAGT-TTAAAT---CAGGA--------TACGATCT 1084
.|||||.||.||.|..||| ||.||| ||||| |.|.||||
BPUM_0283___g 1026 CTTCTTGATCGGCTTTAGTCTTGAATGGGCAGGAGCAGCAAGTGCCATCT 1075
BSNT_01789___ 1085 TATTAACCATGGGAATATTTACAACT--ATGGCGGTCATTCTA---GTAG 1129
| |.|||.|..|| .|.||.||..||||| |.||
BPUM_0283___g 1076 T--------------TGTTTTCGCCTTCTTAGCTGTTCTTCTATTTGCAG 1111
BSNT_01789___ 1130 GT---ATT--------TC-TGTAAAGATTAGGAGAACTAAAACAGAAGAC 1167
.| ||| || |||.||| ||||.|||| ||
BPUM_0283___g 1112 CTGCGATTCAAATGAATCGTGTGAAG------------AAAAAAGAA-AC 1148
BSNT_01789___ 1168 CCTATTTCACTTGAAAACAAAGCATCAAAAACACGT-GTAAATGAAA--- 1213
|.|..|.| |.||||| || |..|.|||||
BPUM_0283___g 1149 CGTTCTCC---------CCAAGCA----------GTCGGCACTGAAAGCG 1179
BSNT_01789___ 1214 GAT-ACTAA 1221
||| |.|||
BPUM_0283___g 1180 GATCAGTAA 1188
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