Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01790 and BPUM_0282
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_01790___yhjJ.1.24716.seq
# -bsequence dna-align/BPUM_0282___yhjJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01790___yhjJ-BPUM_0282___yhjJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01790___yhjJ-BPUM_0282___yhjJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01790___yhjJ
# 2: BPUM_0282___yhjJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity: 701/1142 (61.4%)
# Similarity: 701/1142 (61.4%)
# Gaps: 184/1142 (16.1%)
# Score: 1940.5
#
#
#=======================================
BSNT_01790___ 1 ATGAAGAAGATTGGCATCATAGGTGCAGGTGGTATTGCAAGAGCGCAAGC 50
||||||||.|||||.||..|.||.|||||...||||||||.|||.||.||
BPUM_0282___y 1 ATGAAGAAAATTGGAATTGTTGGAGCAGGGAATATTGCAAAAGCACATGC 50
BSNT_01790___ 51 AACTGCTTTATCTACAATAAAAAATGCAGAGTTAGTAGGGGTATATG--- 97
||..||.|||||.||.||.|||..||||||||||..|||.||.||||
BPUM_0282___y 51 AAGAGCATTATCAACGATCAAAGGTGCAGAGTTATCAGGTGTCTATGATT 100
BSNT_01790___ 98 -ACATAAATCA-----ACAAAATGCGGAAAGCTTTGTGAAAAC-TTTCGG 140
||||.|.||| ||| ||.| ||...||||| .|.|||
BPUM_0282___y 101 TACATGAGTCAGTTGCACA------GGGA----TTCATAAAACAGTACGG 140
BSNT_01790___ 141 CGG------GAAGTCATTTGAAAACGCAGATGAACTAATT----GATGCC 180
||| |.|.|||..| |.|| || ||| || |||||.
BPUM_0282___y 141 CGGACGTGTGTATTCAAGT---ATCG-AG----ACT--TTAGCAGATGCA 180
BSNT_01790___ 181 TCAGAAGGTTTAATTGTAGCATCACCAAACTTTTGCCATAAAGAACATGC 230
||.||.||.||.||..|.|||||.||.||.|||||.||.|||||.|||||
BPUM_0282___y 181 TCCGATGGGTTGATCATTGCATCCCCGAATTTTTGTCACAAAGACCATGC 230
BSNT_01790___ 231 TTTGCAAGCATTAGGAAAACATAAGCATG--------TATTGTGTGAAAA 272
..|.||.|||.||.| ||||.| |.||.||||||||
BPUM_0282___y 231 CCTTCAGGCACTAAG--------AGCAGGACAGCCCATTTTATGTGAAAA 272
BSNT_01790___ 273 GCCTATGGCTATTTCCCTTGAAGAAGC-AAGCATAATGAAAGATACTGCT 321
|||.||||||.|.||.|||.|.||||| |||.| ||||...||.||.||.
BPUM_0282___y 273 GCCGATGGCTGTGTCGCTTAAGGAAGCGAAGGA-AATGGTGGAGACAGCC 321
BSNT_01790___ 322 GAA-------AGGTTGAGCGTAAGAGCCAGTATGGGATTTAATTATAGAT 364
.|| |||||.| ||||||||||||.|||||.|||.|.|
BPUM_0282___y 322 AAACAGTTCCAGGTTCA-------AGCCAGTATGGGCTTTAACTATCGTT 364
BSNT_01790___ 365 ATTTATCTTACGTAAATATCTTAAAAAGCTTAATTATCAATAATGAACTA 414
|.|||||.|..||.|||||.||.||.|.|||.|||..||||..||||.||
BPUM_0282___y 365 ACTTATCCTTTGTGAATATTTTGAAGAACTTGATTGCCAATGGTGAATTA 414
BSNT_01790___ 415 GGTAACAT----ACTGTCCATAAAAGTA--CACTTCAAGAAAAATAGTGC 458
||.|..|| ||.||| ||.| ||.||.||||||||.|||||
BPUM_0282___y 415 GGCAGGATTTTAACGGTC------AGGACGCATTTTAAGAAAAACAGTGC 458
BSNT_01790___ 459 ACTTAGACGTAAGAAGTTTACTTGGAGAGATGACGCTAACAGTAAGAAG- 507
.||.|||.|.||||..|||.|.|||||||| .|.||||.|| ||
BPUM_0282___y 459 CCTCAGAAGAAAGACATTTTCATGGAGAGA------CAGCAGTGAG-AGT 501
BSNT_01790___ 508 ------ACGAGTGGATCATTGGGGGATCTGGGTATTCACCTTATTGACAT 551
|||||.||..||||.||||||||.||.|||||..|.|||||.||
BPUM_0282___y 502 CTGCGTACGAGCGGTGCATTAGGGGATCTTGGCATTCATTTAATTGATAT 551
BSNT_01790___ 552 GGTATGGTATTTGTTTGAGAGTGATTTCATCACAGAATCAGTAAGGGCAA 601
|.|.|||||.||.||||..|||||..|.|..|.|||||||.|.|...|.|
BPUM_0282___y 552 GTTGTGGTACTTATTTGGCAGTGAGATGAAGAAAGAATCACTTAATACCA 601
BSNT_01790___ 602 AAATGAACACAAATGTAAAAACAAAAGAGGATAAACAGGTACTCGTAGAT 651
|.|||..|||..|||||||...||||||.||.|||.||||||..||.|||
BPUM_0282___y 602 AGATGCTCACGCATGTAAAGGAAAAAGAAGAGAAAAAGGTACAGGTGGAT 651
BSNT_01790___ 652 GACTATGCAGAAATTTATGGCCAGCTGAAGAA-CAAG-GTATTTGTAAAT 699
||..||.|.|||||||..||.|||.||.|||| |||| ||..||
BPUM_0282___y 652 GATCATACCGAAATTTTCGGTCAGATGGAGAATCAAGTGTTCTT------ 695
BSNT_01790___ 700 ATCA-----TCACATCAAAATGTTCTGTA-CCTGAAGACTGTGGTTTTAG 743
||| |||||||.|||.|..| |.| |||||.||.||.||.||.||
BPUM_0282___y 696 -TCACTTGGTCACATCCAAAAGCAC-GCAGCCTGAGGAATGCGGATTCAG 743
BSNT_01790___ 744 CATTGAGGTAGTTGGACACAAAAAAGAGTTTAAATACCA----CACAGGT 789
..|.||.||.|||||.||..|.||.|..||.|||||||| .|||.|.
BPUM_0282___y 744 TGTAGAAGTCGTTGGTCATGACAAGGTATTCAAATACCATACGAACATGA 793
BSNT_01790___ 790 AATCCTCACGTTTACAAGCTCATAGATGGCTTGAACGTG-GTAGACTGC- 837
|| .|||..||..||.|||..|||||||| ||| ||.||..||
BPUM_0282___y 794 AA----AACGAATATGAGATCAGCGATGGCTT----GTGTGTGGAGCGCC 835
BSNT_01790___ 838 --CCAGTACCGCAAAGCCTATTAAACGATCCGCCAAACGAGTTTTATGGA 885
|.|.|.|||||||.|.|..|.|..|||||||||||.||.|||||||||
BPUM_0282___y 836 ATCAAATGCCGCAAACCTTGCTGACAGATCCGCCAAATGAATTTTATGGA 885
BSNT_01790___ 886 TGGGCTGATTCTTTTAGAAGCGAGTTAATCAATTGGAT---------TGC 926
|||.|||||.|.||..|...|.||||.||..|.|||.| |.|
BPUM_0282___y 886 TGGTCTGATACGTTCCGTGACCAGTTGATGCACTGGGTGAATACAGATCC 935
BSNT_01790___ 927 AT---CAACTCAGAATGATTGGGTTGAGA-TCCCTTCTTTTAGT-GATGG 971
|| ||.||||.| |||.| ||.||..|||| || ||.||
BPUM_0282___y 936 ATATCCATCTCATA----------TGAAAGTCGCTGATTTT-GTAGACGG 974
BSNT_01790___ 972 TTTTAGATCTCAGGAAG----TATTAGAAATGTTCTTTGAGA---AAGA- 1013
.|.|.|..|.||||..| ||.||.| |.|||.|||| ||||
BPUM_0282___y 975 GTATCGCGCACAGGCTGCGCTTAATACA----TGCTTCGAGAGGGAAGAG 1020
BSNT_01790___ 1014 -CAGCAACTCTCAACCAATGTCTGTTTCAGCA-GTCAACTAG 1053
|.| ||.| |||||.|...||| .|.||
BPUM_0282___y 1021 GCGG------TCGA-----GTCTGCTCGGGCATATTAA---- 1047
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