Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01791 and BPUM_0281
See
Amino acid alignment /
Visit
BSNT_01791 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_01791___yhjK.1.24716.seq
# -bsequence dna-align/BPUM_0281___yhjK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01791___yhjK-BPUM_0281___yhjK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01791___yhjK-BPUM_0281___yhjK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01791___yhjK
# 2: BPUM_0281___yhjK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 968
# Identity: 550/968 (56.8%)
# Similarity: 550/968 (56.8%)
# Gaps: 220/968 (22.7%)
# Score: 1362.0
#
#
#=======================================
BSNT_01791___ 1 ATGTTATTAAG---------CAAGAAATCGGAGTATAAAAC------GTT 35
|||||||.||| ||| ||.||||| .|.
BPUM_0281___y 1 ATGTTATCAAGTCTTCCATTCAA----------TAAAAAACTGCTAAATC 40
BSNT_01791___ 36 ATCCACGGTTGAACATCCTCAGTATATTGTTTTTTGTGATTTTGATGAAA 85
|.|| |.||.||||..|||..||.||.||.||||||||||||||||
BPUM_0281___y 41 AGCC-----TAAAAATCCGAAGTGGATCGTCTTCTGTGATTTTGATGAAA 85
BSNT_01791___ 86 CGTATT-TTCCGCATACAATCGACGA----ACAAA--AGCAACAAGACAT 128
|.|||| ||| || |||| |||.| ||||.|.|||
BPUM_0281___y 86 CCTATTATTC---------TC-ACGAAATGACAGAGGAGCAGCGAGA--- 122
BSNT_01791___ 129 TTATG--AA----CTCGAAGACTACCTAGAACAAAAAAGTAAAGATGGGG 172
..||| || ||.||.|..|...|.|.|.||||.||..|||..||..
BPUM_0281___y 123 GGATGTCAAGCGGCTGGAGGCTTTTGTGGCAGAAAAGAGCGAAGCAGGAC 172
BSNT_01791___ 173 AACTAATAATCGGATGGGTTACTGGGAGCAGTATAGAATCTATTATCGA- 221
|.||.||..|.||.|||||.||.||.|||||..|.||.|||.|.| |||
BPUM_0281___y 173 AGCTCATGCTTGGCTGGGTGACGGGAAGCAGCCTTGATTCTGTGA-CGAG 221
BSNT_01791___ 222 TAAAATGGGACGAGGAAAA------TTTAGAT-ATTTTCCGCATTTTATA 264
.||||| |||||| |||..|| |.||.||||||||.||.
BPUM_0281___y 222 CAAAAT-------GGAAAAAGGCGGTTTTCATCAATTCCCGCATTTCATT 264
BSNT_01791___ 265 GCTAGTGATCTT-GGAACTGAAATTACGTACTTTTCAGA-GCATAACTTC 312
|| |..||.||| ||.|||||.|||..|||....||||| || |.|.||.
BPUM_0281___y 265 GC-ATCGAACTTAGGGACTGAGATTGTGTATACATCAGATGC-TCATTTT 312
BSNT_01791___ 313 GGTCAGCAAGATAACAAGTGGAACAGTCGCATAAATG---AAGGGT--TT 357
||.||||.||||....||||||..|..||..|..||| ||||.| |.
BPUM_0281___y 313 GGACAGCCAGATGCGGAGTGGATGAAGCGTCTGGATGCGCAAGGATTCTC 362
BSNT_01791___ 358 AGTAAAGAAAAGGTTGAAAAACTTGT-GAAACAGC-TGCATGAAAATCAT 405
|| |.|||||..|||||.|..|..| ||||| | |.|.||||||
BPUM_0281___y 363 AG--ATGAAAAAATTGAAGACATCCTCGAAAC--CATACGTGAAAA---- 404
BSNT_01791___ 406 AAC----ATTCTTTTGAATCCTCAAACTCAATTAGGAAAGTCACGGTATA 451
||||.|.|.|..||.|||||.||..|.||.|..|||.|.||||
BPUM_0281___y 405 ---GGGAATTCATCTCAGGCCGCAAACGCAGCTGGGCAGCTCAGGATATA 451
BSNT_01791___ 452 AGCATAACTTCTACTATCAGGAACAAGATGAAATAAACGACAAGAAAAAC 501
||.|.||.|||||.||||||||.||.|||| |||| ||.|.|.
BPUM_0281___y 452 AGAAGAATTTCTATTATCAGGAGCAGGATG-----AACG----GACAGAT 492
BSNT_01791___ 502 CT------------ATT------AGCAATTG-AAAAAATCTGCGAGGAAT 532
|| ||| |.||.||| .|||.|.| |||.||
BPUM_0281___y 493 CTTCATCATCTATCATTCATCCAAACACTTGCCAAAGAGC-GCGGGG--- 538
BSNT_01791___ 533 ATGGCGTTTCAGTAAATAT----AAATCGGTGTAATCC-CTTAGCAGGCG 577
||||| ||.||.|| ||| ||.||||| ||| |||||.|
BPUM_0281___y 539 -TGGCG-----GTCAACATCAACAAA----TGCAATCCGCTT-GCAGGAG 577
BSNT_01791___ 578 ATCCAGAAGACAGCTATGATGTAGATTTTATCCCCATAGGGACAGGAAAG 627
|.||.|..||..||||||||||.||||||.|.||..|.||.|||||.|||
BPUM_0281___y 578 ACCCTGCGGATTGCTATGATGTCGATTTTTTACCAGTCGGCACAGGGAAG 627
BSNT_01791___ 628 AATGAAATTGTAACGTTTATGTTAGAGAAATACAACCTAAA-----TACC 672
.||||||||||.|..||||||.| .||||.|.| ||.|
BPUM_0281___y 628 GATGAAATTGTCAGCTTTATGCT---------GAACCAATATGATTTATC 668
BSNT_01791___ 673 GAAAGA-----GCTATCGCATTTGGGGATAGTGGAAATGATGTTCGTATG 717
|||||| ||| |.||.|||||.|||||||||||.|||.|.||.|||
BPUM_0281___y 669 GAAAGATCAGGGCT-TTGCCTTTGGAGATAGTGGAAACGATTTGCGGATG 717
BSNT_01791___ 718 TTACAGACAGTAGGGAATGGATATCTGCTAAAAAATGCAACACAGGAAGC 767
.|.||..|.||...|.|.||.|..||..|..|||||||.||....|||||
BPUM_0281___y 718 CTTCAATCCGTCACGCACGGTTTCCTTGTCCAAAATGCGACGGCCGAAGC 767
BSNT_01791___ 768 CAA--------------AAACTTGCACAACCATATAACTGATAGTGAGTA 803
||| |||.||| |.||..||.|||
BPUM_0281___y 768 CAAGCGGCATCATCATCAAATTTG--------------TCATCATGGGTA 803
BSNT_01791___ 804 CTCAAAAGGAATTACTA--ATAC-CTTAAAAAAATTAATTGGAT---CAT 847
..|||||||||| ||| |.|| ||.||||.|.|.| ||.|| |||
BPUM_0281___y 804 TGCAAAAGGAAT--CTATGAAACACTGAAAACAGTGA--TGTATAAACAT 849
BSNT_01791___ 848 GA---------------- 849
||
BPUM_0281___y 850 GAGGAGGCACATTCATGA 867
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.