Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00543 and BPUM_0278
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:21
# Commandline: needle
# -asequence dna-align/BSNT_00543.1.24716.seq
# -bsequence dna-align/BPUM_0278___lctP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00543-BPUM_0278___lctP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00543-BPUM_0278___lctP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00543
# 2: BPUM_0278___lctP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1696
# Identity: 846/1696 (49.9%)
# Similarity: 846/1696 (49.9%)
# Gaps: 548/1696 (32.3%)
# Score: 2605.5
#
#
#=======================================
BSNT_00543 0 -------------------------------------------------- 0
BPUM_0278___l 1 ATGTGGCAGCAAATATATAATCCGTTTGGTAATGAGTTCGTGAGTGCATT 50
BSNT_00543 0 -------------------------------------------------- 0
BPUM_0278___l 51 GGTAGCCATGCTTCCAATTTTGTTTTTCCTACTTGCATTAACCGTTTTTA 100
BSNT_00543 0 -------------------------------------------------- 0
BPUM_0278___l 101 AGTTAAAAGGTGTTTTAGCCGCTTGTTTTACCTTAATCGTCAGTTTTGTT 150
BSNT_00543 0 -------------------------------------------------- 0
BPUM_0278___l 151 ACAGCGGTTTTCTTCTTCCATATGCCAATTGAAAAAGCATTATCTGCTGT 200
BSNT_00543 0 -------------------------------------------------- 0
BPUM_0278___l 201 GCTGCTCGGTATATCTAATGGGCTGTGGCCGATTGGATATATCGTCATCA 250
BSNT_00543 0 -------------------------------------------------- 0
BPUM_0278___l 251 TGGCGGTGTGGCTCTATAAAATAGCTGTAAAATCTGGTAAATTCGATGTT 300
BSNT_00543 0 -------------------------------------------------- 0
BPUM_0278___l 301 ATTCGTTCTAGTATTGCAGGAATCTCTCAAGATCAACGTCTTCAGCTCTT 350
BSNT_00543 1 -----------------------------------------------TTG 3
|||
BPUM_0278___l 351 ATTAATTGGTTTTAGTTTTAACGCATTTTTAGAGGGAGCCGCTGGGTTTG 400
BSNT_00543 4 GTGTTCCGATTGGCG----GCGCTGCTCGTC------GAACTTGGTTTTA 43
||||.|||||| ||| |.||.|||| || ||.|||||.||||
BPUM_0278___l 401 GTGTACCGATT-GCGATTAGTGCCGCTC-TCTTAACAGAGCTTGGATTTA 448
BSNT_00543 44 AACCGTTAAAAGCGGCAGCGCTCTGCTTGATTGCAAACGCAGCCTCCGGA 93
|||||.|.|||||.||...|||.|||||.|||||.||.||.||.||.||.
BPUM_0278___l 449 AACCGCTGAAAGCTGCGATGCTTTGCTTAATTGCCAATGCTGCGTCTGGC 498
BSNT_00543 94 GCCTTTGGGGCGATCGGAATTCCTGTCATCACAGGGGCACAGATTGGTAA 143
||.|||||.||..|.||.||.||.|||||.||||||||.||.||.||.||
BPUM_0278___l 499 GCATTTGGTGCTGTGGGTATCCCAGTCATTACAGGGGCGCAAATGGGCAA 548
BSNT_00543 144 TTTGTCTGCTCTTGAGCTGTCACGGACATTAATGTGGACACTGCCGATGA 193
|.||.|..|.||||...|.||.|..||..|..|||..||..|.|||.|.|
BPUM_0278___l 549 TATGACGCCGCTTGCATTATCTCAAACCCTTGTGTTTACGATTCCGTTTA 598
BSNT_00543 194 TCTCATTTTTAATACCATTCCTGCTTGTATTCTTAT--TAGACCGAATGA 241
|.|||||.|..||.||.|||||.|| ||||||.|| |.|||.||.|.|
BPUM_0278___l 599 TTTCATTCTGTATTCCGTTCCTCCT--TATTCTCATTGTGGACGGATTCA 646
BSNT_00543 242 AAGGAATCAAACAGACATGGCCCGCT--CTT-CTGGTTGTGAGCGGTGGG 288
||||.||.|||.|.|| ||.|.|| ||| ||.||||||||.||..|.
BPUM_0278___l 647 AAGGGATTAAAGAAAC---GCTCCCTGCCTTGCTTGTTGTGAGTGGAAGC 693
BSNT_00543 289 TATAC---------AGCGGTTCAGACAC-----TGACAATGGCGGTGCTC 324
|||.| |||.|| ||| ||||||||
BPUM_0278___l 694 TATGCCATTTTGCAAGCTGT-----CACAATGGTGACAATG--------- 729
BSNT_00543 325 GGGCCGGAATTAGCAAACATTTTGGCGGCCTTATTCAGCATGGG----CG 370
||.||.||..|.||.||.|||.|..|.||.|||...||.||||| ..
BPUM_0278___l 730 GGTCCTGAGCTTGCCAATATTATTTCAGCTTTAGCAAGTATGGGAATTTT 779
BSNT_00543 371 GGCTTGCCCTCTTCCTCCGCAAATGGCAGCCGAAAGAGATTTACCGCGAG 420
||||| |.|||||.||.||||||||||||||..|.||.||.||.||.
BPUM_0278___l 780 GGCTT----TATTCCTTCGAAAATGGCAGCCGAAGCACATCTATCGTGAA 825
BSNT_00543 421 GAAGGGGCCGGCGATGCTGGTG---AGAAAAAGGCATACCGTGCTGCTGA 467
|||||.|| .|.| ||.|.|| |||||.|..|.||.||.|..|.|||
BPUM_0278___l 826 GAAGGAGC--ACCA-GCCGTTGAACAGAAACAAACGTATCGCGGGGTTGA 872
BSNT_00543 468 TATTGC-GAAAGCGTGGTCTCCTTTCTACATTTTAACTGCGGCGATCACC 516
|.||| ||||||.||||||||.|||||.|||||||||||.|.|||.||.
BPUM_0278___l 873 -AGTGCTGAAAGCATGGTCTCCGTTCTATATTTTAACTGCTGTGATTACG 921
BSNT_00543 517 ATCTGGAGCCTTCCTGCCTTCAAAGCGCT-TTTCC--AAGAAGGCGGGCT 563
.|.|||||.||.||.||.||.||||||.| |||.| .||.||||..||
BPUM_0278___l 922 GTATGGAGTCTGCCAGCATTTAAAGCGTTGTTTGCTGTAGGAGGCCCGC- 970
BSNT_00543 564 GTTATATCAA----TCAACGCTCCTGTTCAAAATGCCTTTTCTGCATCAG 609
|||| .||||..|..|..|.||||||||.|||.||||||||
BPUM_0278___l 971 ------TCAACTGGACAACCATTTTAGTAAAAATGCCATTTTTGCATCAG 1014
BSNT_00543 610 CAAATTATGAAAATGCCGCCGATTGCGCCATCTGCCATGCCGTTAGATGC 659
||||||.|||||.|.||.||.|||||.|.|.|.||.|..||..|.|||||
BPUM_0278___l 1015 CAAATTGTGAAATTACCACCAATTGCACAAACAGCAACACCTATTGATGC 1064
BSNT_00543 660 AGTCTTTAAAGTTGATCTGCTGTCA--GCGACTGGAACATCGATT----T 703
..||||||||.|||||.|| .||| ||.||.||.||..|.||| |
BPUM_0278___l 1065 GATCTTTAAAATTGATGTG--ATCAGTGCAACGGGTACGGCCATTCTGAT 1112
BSNT_00543 704 TAGCGGCGGTCATCGTGACAGGGCTGTTCAGCA-------------AAAA 740
| ||.||.||..|||||||..||||.|||| ||||
BPUM_0278___l 1113 T----GCAGTGATGCTGACAGGTTTGTTTAGCAGACATATTACATTAAAA 1158
BSNT_00543 741 TTTCTCTTGTCGGGATGCCTTTGCTTCCTTGAAGGAGACAGGAAAAGAGC 790
||.|.|..|||.|.|||.||.|...|||..|||||||
BPUM_0278___l 1159 -------------GAAGGCGCTGCCTGCTTAAAAGCATCAGTGAAAGAGC 1195
BSNT_00543 791 TGTGGGTGCCGATTATGACGATCTGCTTCGTGATGGGGTTTGCCAATCTG 840
|.|||||.||..||.|.||.||.||.||.||.|||||.||||||||..||
BPUM_0278___l 1196 TTTGGGTACCAGTTCTCACCATTTGTTTTGTCATGGGCTTTGCCAACTTG 1245
BSNT_00543 841 GCCAACTTCGCAGGGCTCAGCTCTTCAATTGGGTTAGCATTGGCGAAAAC 890
||.||||||||.||.||.||.||..|.||||||.|.|||.|.||.|||||
BPUM_0278___l 1246 GCGAACTTCGCTGGTCTAAGTTCAGCCATTGGGCTTGCACTTGCCAAAAC 1295
BSNT_00543 891 AGGAGACCTGTTCCCGTTTGTCAGTCCTGTTCTCGGCTGGATTGGCGTGT 940
|||.||..||||||||.|||||||.||.||.||.||||||||.||.||||
BPUM_0278___l 1296 AGGCGATTTGTTCCCGCTTGTCAGCCCAGTGCTTGGCTGGATCGGGGTGT 1345
BSNT_00543 941 TCATCACCGGTTCTGTTGTCAGCAATAATGCTTTGTTCGGCCATTTGCAG 990
|.||.||.||.|||||.||.||.||.||.||.||.||||||.|..|.||.
BPUM_0278___l 1346 TTATTACAGGATCTGTCGTGAGTAACAACGCATTATTCGGCAACCTTCAA 1395
BSNT_00543 991 GTTGTCACGGGAGCGCAGATCGG------TGCGGGTTCAGATTTGCTGTT 1034
|..|||||.|...|.||.||||| .||.|||| ||||
BPUM_0278___l 1396 GCGGTCACTGCTTCTCAAATCGGCTCACAGGCTGGTT---------TGTT 1436
BSNT_00543 1035 A---GCCGCAAATACGGCGGGCGGTGTCATGGCGAAACTTGTTTCTCCTC 1081
| |..||||||||..|||||||.||||||||||||.|..|||||||.|
BPUM_0278___l 1437 AATCGGAGCAAATACAACGGGCGGGGTCATGGCGAAATTAATTTCTCCAC 1486
BSNT_00543 1082 AATCTATCGCCATCGCTGCCGCAGCGGTCGGCCAAACAGGCAAGGAATCT 1131
|||||||||||||.|||.|.|||||.||.||..|||||||.||.||||||
BPUM_0278___l 1487 AATCTATCGCCATTGCTACAGCAGCAGTTGGAGAAACAGGTAAAGAATCT 1536
BSNT_00543 1132 AAACTGTTTAAAAGGACAGTGGCGTACAGCCTGATTCTGTT----ATTGA 1177
.||||.||..|||.|||.|||..|||||||.|.||.|||.| ||.|
BPUM_0278___l 1537 GAACTCTTCCAAAAGACTGTGAAGTACAGCTTTATCCTGCTCGGCATAG- 1585
BSNT_00543 1178 TCATTTGTATATGGATGTTTATTCTTGCAAGATTAGGAGTGTAA-- 1221
|.|||.||||||..||.||||||||...||| ||||.
BPUM_0278___l 1586 ---TGTGTGTATGGACATTCATTCTTGCTCAATT-----TGTATAG 1623
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