Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00541 and BPUM_0277

See Amino acid alignment / Visit BSNT_00541 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:21
# Commandline: needle
#    -asequence dna-align/BSNT_00541___ldh.1.24716.seq
#    -bsequence dna-align/BPUM_0277___ldh.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00541___ldh-BPUM_0277___ldh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00541___ldh-BPUM_0277___ldh.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00541___ldh
# 2: BPUM_0277___ldh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 988
# Identity:     713/988 (72.2%)
# Similarity:   713/988 (72.2%)
# Gaps:          62/988 ( 6.3%)
# Score: 2558.0
# 
#
#=======================================

BSNT_00541___      1 ATGATGAACAAACATGTAAATAAAGTAGCTTTAATCGGAGCGGGTTTTGT     50
                     ||||..|||.||.|.|||||.||||||||..|.||.|||||.||||||||
BPUM_0277___l      1 ATGACAAACGAAAAAGTAAACAAAGTAGCACTTATTGGAGCAGGTTTTGT     50

BSNT_00541___     51 TGGAAGCAGTTATGCATTTGCGTTAATTAACCAAGGGATCACAGATGAGC    100
                     .||.|||||||||||.|||.|.|||||.||.||||.||||||||||||..
BPUM_0277___l     51 AGGTAGCAGTTATGCCTTTACATTAATAAATCAAGTGATCACAGATGAAT    100

BSNT_00541___    101 TTGTGGTCATTGATGTAAATAAAGAAAAAGCAATGGGCGATGTGATGGAT    150
                     |.||.|||||.|||.|.|||.||||.|||||||||||.||.|||||||||
BPUM_0277___l    101 TGGTTGTCATCGATTTGAATCAAGATAAAGCAATGGGTGACGTGATGGAT    150

BSNT_00541___    151 TTAAACCACGGAAAGGCGTTTGCGCCACAACCGGTCAAAACATCTTACGG    200
                     |||||||||||.||.||.|||||.||.||.||.||.||.||||..||.||
BPUM_0277___l    151 TTAAACCACGGGAAAGCATTTGCTCCGCACCCAGTGAATACATGGTATGG    200

BSNT_00541___    201 AACATATGAAGACTGCAAGGATGCTGATATTGTCTGCATTTGCGCCGGAG    250
                     |...|||||.||.||.||||||||.||.|||||.||.||.||.||.||||
BPUM_0277___l    201 AGATTATGAGGATTGTAAGGATGCAGACATTGTGTGTATCTGTGCTGGAG    250

BSNT_00541___    251 CAAACCAAAAACCTGGTGAGACACGCCTTGAATTAGTAGAAAAGAACTTG    300
                     ||||||||||.||.|||||.||..|.|||||..|.||.||.||.|||||.
BPUM_0277___l    251 CAAACCAAAAGCCAGGTGAAACGAGACTTGACCTTGTGGAGAAAAACTTA    300

BSNT_00541___    301 AAGATTTTCAAAGGCATCGT---CAGTGAGGTCATGGCGAGCGGATTTGA    347
                     ||.||.||.||||||||.||   ||   |.||.|||...||.|||||.||
BPUM_0277___l    301 AATATATTTAAAGGCATTGTAGACA---ATGTGATGAAAAGTGGATTCGA    347

BSNT_00541___    348 CGGCATTTTCTTAATCGCGACAAATCCGGTTGATATCCTGACTTACGCAA    397
                     .||.|||||||||.||||.|||||.||.||||||||..|.||.||.||.|
BPUM_0277___l    348 TGGTATTTTCTTAGTCGCCACAAACCCTGTTGATATTTTAACATATGCGA    397

BSNT_00541___    398 CATGGAAATTTAGCGGCCTGCCAAAAGAGCGGGTGATCGGAAGCGGCACA    447
                     |.||||||||.||.||.||.||||||||.||.||||||||.||.||.||.
BPUM_0277___l    398 CTTGGAAATTCAGTGGACTTCCAAAAGAACGAGTGATCGGCAGTGGAACT    447

BSNT_00541___    448 ACACTAGATTCTGCGAGATTCCGTTTCATGCTGAGCGAATACTTTGGCGC    497
                     |||||.|||.|.||.|||||..|.|.||||||.||.||.|||||||.|||
BPUM_0277___l    448 ACACTTGATACCGCAAGATTTAGATACATGCTCAGTGAGTACTTTGACGC    497

BSNT_00541___    498 AGCGCCTCAAAACGTACACGCGCATATTATCGGAGAGCACGGCGACACAG    547
                     ||||.|.||.||.||.||.|||.||||.||.||||||||.|||||.||||
BPUM_0277___l    498 AGCGGCACACAATGTGCATGCGTATATCATTGGAGAGCATGGCGATACAG    547

BSNT_00541___    548 AGCTTCCTGTTTGGAGCCACGCGAATGTCGGCGGTGTGCCGGTCAGTGAA    597
                     |||||.||||||||||.||.||||||.||||..||||.|||.|.|..|||
BPUM_0277___l    548 AGCTTGCTGTTTGGAGTCATGCGAATATCGGAAGTGTACCGATTACAGAA    597

BSNT_00541___    598 CTCGTTGAGAAAAACGATGCGTACAAACAAGAGGAGCTGGACCAAATTGT    647
                     .|..|..|||||||.|||...|||||||||||.||..|.||      || 
BPUM_0277___l    598 TTAATGAAGAAAAATGATCAATACAAACAAGAAGATTTAGA------TG-    640

BSNT_00541___    648 AGATGATGTGAAAA--------ACGCAGCTTACCATATCATTGAGAAAAA    689
                     |||||||| |||||        |.||.|||||.||.||.|||||||||||
BPUM_0277___l    641 AGATGATG-GAAAATGTTCGTCATGCCGCTTATCAAATTATTGAGAAAAA    689

BSNT_00541___    690 AGGCGCGACTTATTATGGGGTTGCGATGAGTCTTGCTCGCATTACAAAAG    739
                     ||||||.|||||.||.||.||.|||||||||.|.||.|||||.||||.||
BPUM_0277___l    690 AGGCGCTACTTACTACGGTGTAGCGATGAGTTTGGCCCGCATAACAAGAG    739

BSNT_00541___    740 CCATTCTTCATAATGAAAACAGCATATTAACTGTCAGCACATATTTGGAC    789
                     |.|||||.||.|||||||||||.||.||.|||||||||||.||.||.||.
BPUM_0277___l    740 CGATTCTGCACAATGAAAACAGTATTTTGACTGTCAGCACTTACTTAGAT    789

BSNT_00541___    790 GGGCAATACGGTGCAGATGACGTGTACATCGGTGTGCCGGCTGTCGTGAA    839
                     ||..|.|||||.||||||||.||.|||||.|||||.||.||..|.|||||
BPUM_0277___l    790 GGAGAGTACGGAGCAGATGATGTCTACATTGGTGTACCTGCCCTTGTGAA    839

BSNT_00541___    840 CCGCGGAGGGATCGCA--------GGTATCACTGAGC-TGAACT-TAAAT    879
                     .||....||   ||||        |.||     |||| ||  || |.|||
BPUM_0277___l    840 TCGAAATGG---CGCAACAGAAGTGATA-----GAGCTTG--CTCTGAAT    879

BSNT_00541___    880 GAGAAAGAAAAAGAACAGTTCCTTCACAGCGCCGGCGTCCTTAAAA-ACA    928
                     ||.|.||||||||||||.|||...|||||.|.....|| .|||||| |.|
BPUM_0277___l    880 GATACAGAAAAAGAACAATTCGCACACAGTGTGAATGT-GTTAAAAGAGA    928

BSNT_00541___    929 TTTTAAAACCTCATTTTGCAGAACAAAAAGTCAACTAA    966
                     ||||....|||||||||..|                  
BPUM_0277___l    929 TTTTGGCTCCTCATTTTTAA------------------    948


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