Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00532 and BPUM_0276
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:21
# Commandline: needle
# -asequence dna-align/BSNT_00532.1.24716.seq
# -bsequence dna-align/BPUM_0276___ycgA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00532-BPUM_0276___ycgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00532-BPUM_0276___ycgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00532
# 2: BPUM_0276___ycgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1471
# Identity: 1072/1471 (72.9%)
# Similarity: 1072/1471 (72.9%)
# Gaps: 77/1471 ( 5.2%)
# Score: 3805.5
#
#
#=======================================
BSNT_00532 1 ATGAGTATGCCAGCAGCCGAAACACAGCCTAAGAAAAAACGAATGACATT 50
||||..| |||||||.|.|.|||..||..|||||.||..||..|.|.|
BPUM_0276___y 1 ATGAAAA---CAGCAGCAGTATCACCACCAGAGAAACAAAAAAGAAAACT 47
BSNT_00532 51 TAAAATGCCTGACGCCTATGTCCTCTTATTTATGATTGCTTTCATTTGCG 100
|.|||||||.||.||.|||||.|||.|||||||.|||||..|||||||..
BPUM_0276___y 48 TCAAATGCCGGATGCGTATGTTCTCCTATTTATCATTGCGCTCATTTGTA 97
BSNT_00532 101 CAATCGCTTCATATATTGTGCCGGCAGGTGAATTTGACCGCGTGACAAAG 150
|.||.||..|.|||.|||||||.|||||||||||||||||...||||...
BPUM_0276___y 98 CCATTGCCACGTATTTTGTGCCAGCAGGTGAATTTGACCGAAAGACATCA 147
BSNT_00532 151 GGGGATGTCACGACCGCTGTTCCGGGAAGCTATCATTCAATTGAACAGTC 200
|||||..|.||.||.||||||||.||.||||||||....|||||.||.||
BPUM_0276___y 148 GGGGAGATTACAACAGCTGTTCCTGGCAGCTATCACCGCATTGATCAATC 197
BSNT_00532 201 TCCGGT-----CAGCTTGATCAGCTTTTTTACTTCTCTACAGGATGGAAT 245
.||.|| ||| |..||||||||||..||.|.|||||.||.||
BPUM_0276___y 198 ACCCGTAAGTCCAG-----TAGGCTTTTTTACAGCTATTCAGGAAGGGAT 242
BSNT_00532 246 GGTTGGATCAGCACCCATCATCTTTCTGATTCTATTCACAGGCGGCACCA 295
|||.||.||..|..|.||.||.|||||.|||.||||.||.|||||.||||
BPUM_0276___y 243 GGTAGGGTCTTCTTCTATTATTTTTCTCATTTTATTTACTGGCGGAACCA 292
BSNT_00532 296 TTGCTATTCTAGAAAAAACGGGTGCCATCAATGGCCTGATTTACAATGTC 345
||||.|||.|.||.|||||.||||||||.||.||..|||||.||.|||||
BPUM_0276___y 293 TTGCCATTTTGGAGAAAACAGGTGCCATTAACGGAATGATTCACCATGTC 342
BSNT_00532 346 ATCAGCAAATTCCGCACAAAGCAATTATTATTTATTTGTATTGTCGGCGC 395
|||||||.|||.|..||||||||||||||.||||||||||||||.||.|.
BPUM_0276___y 343 ATCAGCAGATTTCAAACAAAGCAATTATTGTTTATTTGTATTGTTGGAGG 392
BSNT_00532 396 ATTGTTCTCCATTCTCGGAACAACCGGGATTGTCGTGAATTCAGTTATCG 445
|||.||.||..|.||.|||||.|||||||||||||||||.||.|||||||
BPUM_0276___y 393 ATTATTTTCAGTGCTTGGAACGACCGGGATTGTCGTGAACTCTGTTATCG 442
BSNT_00532 446 GTTTTATCCCCATCGGCCTCATTGTGGCACGATCCTTAAAATGGGACGCA 495
|.|||||.||.|||||..|||||||||||.|||||||.||||||||.||.
BPUM_0276___y 443 GATTTATTCCAATCGGGATCATTGTGGCAAGATCCTTGAAATGGGATGCT 492
BSNT_00532 496 GTCGCGGGAGCCGCTGTTATTTACATCGGCTGCTACGCTGGATTTAACTC 545
||.||.|||||.||.||.||||||||||||||.||.||.||.||||||.|
BPUM_0276___y 493 GTAGCAGGAGCGGCGGTCATTTACATCGGCTGTTATGCCGGGTTTAACGC 542
BSNT_00532 546 CACCATATTATCACCGTCACCGCTCGGTTTATCACAATCAATCGCGGAGC 595
.|||||.||.||.||.||.||.|||||.|||||.||..|.||.||.||||
BPUM_0276___y 543 AACCATTTTGTCTCCATCCCCACTCGGGTTATCTCAGACGATTGCAGAGC 592
BSNT_00532 596 TCCCTCTTTTTTCTGGAATCGGCCTGCGAGTTGTGATATACATATGCTTT 645
|.||..||||||||||.||.||||||||.||..|.||||| |.|
BPUM_0276___y 593 TACCGATTTTTTCTGGCATTGGCCTGCGTGTCATTATATA-------TCT 635
BSNT_00532 646 TTGCTGTCT----TCTATTATT---TATATCTATTTGTATACGAG----- 683
|||||.||| ||||.|||| ||.||||||||.|||||.||
BPUM_0276___y 636 TTGCTTTCTTATATCTAGTATTGTGTACATCTATTTATATACAAGACGCC 685
BSNT_00532 684 --AAAATTAAAAAAATCAAAAGATGCC-AGTGTGTTAGGAACAGATTGGT 730
||.|.||||.| .||..||.||| ..||.||.|..|| ||||
BPUM_0276___y 686 TCAAGAATAAAGA---GAAGGGAAGCCTTCTGGGTGATCAA-----TGGT 727
BSNT_00532 731 TCCCTGCGGCAGGAATGGGCGAAGCCGGTAAAGAA---GAAGATCAGCCA 777
|.||||||...||..|.||||.|.|.|.|..|||| |..||..||||.
BPUM_0276___y 728 TTCCTGCGAAGGGGCTTGGCGGATCTGATGCAGAATCTGTGGACAAGCCT 777
BSNT_00532 778 GTGCCGTTTACCGTTCGCCATAAGCTGATTTTGGCTGTGGCGGGACTCTC 827
| |.|||||.|...|.|||||..|||||||.||.|||...|||.|.||
BPUM_0276___y 778 G---CATTTACGGGCAGACATAAATTGATTTTAGCAGTGTGTGGATTGTC 824
BSNT_00532 828 ACTTGTCGGATTTTTATACGGCGCTTTGAAGCTTGGCTGGTCAGATTCCC 877
.||||..||.||.|||||.|||||..|..|||||||||||.|.|||....
BPUM_0276___y 825 TCTTGGGGGCTTCTTATATGGCGCGCTTCAGCTTGGCTGGACTGATAAGG 874
BSNT_00532 878 AAATGGCTGCGA--CATTTATTTTTAT-----TTCTGTCCTTGCCGGTTT 920
|||||||.| || | ||.|||||.|| ||..| ||.||.||
BPUM_0276___y 875 AAATGGCAG-GAGTC-TTCATTTTCATGGCGATTGCG-----GCTGGATT 917
BSNT_00532 921 AATAGGCAGACTTGCGGCGAACGATATTGCCAAAACCTTCATTACG--GG 968
|.|.||..||.|.||.||.||.||||||||.|||||.||.|| || ||
BPUM_0276___y 918 ACTTGGTGGATTAGCAGCCAATGATATTGCGAAAACGTTTAT--CGTCGG 965
BSNT_00532 969 CTGCCAAAGCCTTGTATATGGGGCGCTGATTGTCGGGATGGCACGAAGCA 1018
|||.|||||||||||.||.||.||.||.||||||||.||||||||..|||
BPUM_0276___y 966 CTGTCAAAGCCTTGTTTACGGCGCACTCATTGTCGGAATGGCACGCTGCA 1015
BSNT_00532 1019 TTTCCGTTATCCTTGAAAATGGAAAGCTTCTCGATACTGTCGTCAATGCT 1068
||||.||.||..|.|||||.||.||||||||.||||||||.|||||||..
BPUM_0276___y 1016 TTTCTGTCATTTTGGAAAACGGTAAGCTTCTTGATACTGTGGTCAATGGC 1065
BSNT_00532 1069 TTGGC---TTCACTTTTGGAC-GGATTCAGCCCGATTGCCGGGGCAATCG 1114
||||| |...|| ||| |||||.||.||.|||||.||.||.||.|
BPUM_0276___y 1066 TTGGCGAGTATGCT----GACAGGATTTAGTCCAATTGCTGGTGCGATTG 1111
BSNT_00532 1115 GCATGTATATCGCCAGTGCGCTGCTTCATTTTCTCATCTCTTCAGGGTCT 1164
|.||||||||.||.|||||.||.|||||.|||.|.||.||.|||||.||.
BPUM_0276___y 1112 GGATGTATATTGCGAGTGCACTTCTTCACTTTTTGATTTCATCAGGATCA 1161
BSNT_00532 1165 GGCGAAGCCGTTGTATTTATTCCAATCCTGGCGCCGCTCGCTGATTTGAT 1214
||.|||||.|||||.|||||||||||.||.||||||||.||||||||.||
BPUM_0276___y 1162 GGAGAAGCGGTTGTCTTTATTCCAATTCTTGCGCCGCTGGCTGATTTAAT 1211
BSNT_00532 1215 GGAAATCACGAGACAGGTTGCGGTGGAGGCGGTTATGCTTGGAGAAGGGG 1264
||..|||||.||||||||.||.||.||.||.|||||||||||.|||||||
BPUM_0276___y 1212 GGGCATCACAAGACAGGTCGCTGTAGAAGCAGTTATGCTTGGCGAAGGGG 1261
BSNT_00532 1265 TCGTCAACTGTGTGAACCCGACATCCGGCGTTCTCATGGCAGTGCTTGCC 1314
|.||.||||||.|.||.|||||.||.|||||..|.|||||.||||||||.
BPUM_0276___y 1262 TGGTTAACTGTATCAATCCGACGTCAGGCGTGTTGATGGCTGTGCTTGCT 1311
BSNT_00532 1315 GCCAGCGGTATTCCGTATGTCAAGTGGCTGCGGTTTATGGTGCCGCTTGC 1364
||.||.||||||||.|||||.|||||||||||.|||||||||||||||||
BPUM_0276___y 1312 GCAAGTGGTATTCCTTATGTGAAGTGGCTGCGTTTTATGGTGCCGCTTGC 1361
BSNT_00532 1365 TCTGATTTGGTTCTTGATCGGGCTTGTCTTTATCGTG-ATCGGCGTCATG 1413
.||.||||||||..|.||.||.||||||||||| .|| ||||||||.|||
BPUM_0276___y 1362 ACTCATTTGGTTTGTCATTGGCCTTGTCTTTAT-TTGTATCGGCGTGATG 1410
BSNT_00532 1414 ATCAATTGGGGGCCGTTTTAA 1434
|||||.|||||.||.|.||||
BPUM_0276___y 1411 ATCAACTGGGGACCTTATTAA 1431
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