Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00528 and BPUM_0270

See Amino acid alignment / Visit BSNT_00528 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:20
# Commandline: needle
#    -asequence dna-align/BSNT_00528___opuAA.1.24716.seq
#    -bsequence dna-align/BPUM_0270___opuAA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00528___opuAA-BPUM_0270___opuAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00528___opuAA-BPUM_0270___opuAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00528___opuAA
# 2: BPUM_0270___opuAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1289
# Identity:     962/1289 (74.6%)
# Similarity:   962/1289 (74.6%)
# Gaps:          55/1289 ( 4.3%)
# Score: 3533.0
# 
#
#=======================================

BSNT_00528___      1 ATGA---GTGTAGATGAGAAA----CCAATTAAGATAAAAGTCGAGAAAG     43
                     ||||   .||.||| ||||||    ..|||.|||||||      |.||.|
BPUM_0270___o      1 ATGAATTCTGAAGA-GAGAAATATCAAAATCAAGATAA------ATAATG     43

BSNT_00528___     44 TCTCTAAGATTTTTGGGAAACAAACAAAGAAGGCAGTTCAAATGCTTGCC     93
                     |.|||||.|||||.||.|||.|..|.||.||.|||..|||||||||||..
BPUM_0270___o     44 TATCTAAAATTTTCGGTAAAAATGCTAAAAAAGCATCTCAAATGCTTGAA     93

BSNT_00528___     94 AACGGAAAGACAAAAAAAGAGATCCTGAAAGCAACCGGATCAACCGTTGG    143
                     ||.||.||.|||||||.|||||||||.||||..|||||..||||.|||||
BPUM_0270___o     94 AAAGGGAAAACAAAAAGAGAGATCCTAAAAGAGACCGGCGCAACAGTTGG    143

BSNT_00528___    144 GGTTAATCAGGCAGATTTTGAAGTATATGATGGTGAGATATTTGTCATCA    193
                     .||.||||..|||.|||||||.||.|||||.||.||||||||||||||||
BPUM_0270___o    144 TGTCAATCGAGCAAATTTTGATGTGTATGACGGCGAGATATTTGTCATCA    193

BSNT_00528___    194 TGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGATGTTAAACCGG    243
                     ||||.||||||||||||||.||.||.||..|.||.|||.||.||||..||
BPUM_0270___o    194 TGGGGCTATCAGGGAGCGGAAAGTCCACACTTGTGCGGCTGCTAAATAGG    243

BSNT_00528___    244 CTTATTGAACCGACTGCCG--GAAATATTTACATTGATGGTGACATGATA    291
                     .|.||.|||||.||..|||  ||||||  ||.||||||||.||.||||||
BPUM_0270___o    244 TTAATCGAACCAACCTCCGGCGAAATA--TATATTGATGGGGATATGATA    291

BSNT_00528___    292 ACAAATATGTCTAAAGACCAGCTCCGGGAAGTCCGCCGGAAGAAAATCAG    341
                     |||||||||||.||.||.||..|.||.|||||..|.||.||.||.|||||
BPUM_0270___o    292 ACAAATATGTCAAAGGATCAATTGCGTGAAGTTAGACGTAAAAAGATCAG    341

BSNT_00528___    342 CATGGTCTTCCAAAAGTTCGCTCTGTTCCCGCACAGAACGATACTTGAAA    391
                     |||||||||||||||.|||||..|||||||||||.|.||.||.|||||||
BPUM_0270___o    342 CATGGTCTTCCAAAACTTCGCATTGTTCCCGCACCGCACCATTCTTGAAA    391

BSNT_00528___    392 ACACAGAATACGGACTGGAACTTCAAGGTGTAGACAAACAAGAGCGGCAG    441
                     |||||||.||.||.||.|||.|.|||||||||||||||.|||||| ||.|
BPUM_0270___o    392 ACACAGAGTATGGTCTTGAATTACAAGGTGTAGACAAAGAAGAGC-GCCG    440

BSNT_00528___    442 C-AAAAAGCGCTTGAGTCTCTTAAGCTCGTCGGGCTCGAAGGATTTGAAC    490
                     | .||||||||||||.|||.|.||.||.||.||.||.|||||.||||||.
BPUM_0270___o    441 CTCAAAAGCGCTTGAATCTTTAAAACTTGTTGGACTAGAAGGCTTTGAAG    490

BSNT_00528___    491 ACCAATATCCAGATCAGCTTTCCGGCGGGATGCAGCAGCGTGTCGGCCTT    540
                     |.|||||||||.|.||..|....||.|||||||||||||||||.||..|.
BPUM_0270___o    491 AGCAATATCCAAACCAATTAAGTGGTGGGATGCAGCAGCGTGTTGGATTG    540

BSNT_00528___    541 GCCCGCGCGTTGACAAATGATCCGGACATCCTTCTGATGGACGAAGCGTT    590
                     ||.||.||.||..|||||||.||.||||||.|..|.|||||.|||||.||
BPUM_0270___o    541 GCACGTGCATTAGCAAATGACCCTGACATCTTATTAATGGATGAAGCATT    590

BSNT_00528___    591 CAGTGCGCTTGATCCACTGATTCGTAAAGATATGCAGGATGAGCTTCTTG    640
                     |||.||.||.||||||.|.|||||||||||.|||||||||||..|.||||
BPUM_0270___o    591 CAGCGCACTCGATCCATTAATTCGTAAAGACATGCAGGATGAATTGCTTG    640

BSNT_00528___    641 ATCTTCACGATA---ATGTCGGAAAAACAATTATCTTTATTACGCATGAC    687
                     |.||||   |||   .|||.||.|||||.||.||.||.|||||.|||||.
BPUM_0270___o    641 AGCTTC---ATACATCTGTAGGGAAAACGATCATTTTCATTACCCATGAT    687

BSNT_00528___    688 TTGGACGAAGCGTTGCGGATCGGCGACAGAATTGTCCTAATGAAGGACGG    737
                     ||.||.||.|||.|.||.||.||||||.|.|||||.||.|||||||||||
BPUM_0270___o    688 TTAGATGAGGCGCTTCGTATTGGCGACCGTATTGTGCTCATGAAGGACGG    737

BSNT_00528___    738 CAACATCGTTCAAATCGGCACGCCTGAAGAAATCCTGATGAATCCATCTA    787
                     .||.||||||||.|||||.||.||.||||||||..|||||||.|||||.|
BPUM_0270___o    738 GAATATCGTTCAGATCGGAACACCAGAAGAAATATTGATGAACCCATCGA    787

BSNT_00528___    788 ACGAATATGTTGAGAAATTCGTCGAAGATGTTGATTTGTCTAAAGTCCTC    837
                     |.|||||||||||....|||||.|||||||||||..|.||||||||..|.
BPUM_0270___o    788 ATGAATATGTTGAACGTTTCGTTGAAGATGTTGACCTTTCTAAAGTATTA    837

BSNT_00528___    838 ACAGCAGGCCACATTATGAAACGCGCTGAAACAGTGCGGATTGATAAAGG    887
                     ||.||.||.||.|||||||||||.||.||||||.|.|.|||.||.|||||
BPUM_0270___o    838 ACCGCTGGTCATATTATGAAACGTGCAGAAACAATTCAGATCGACAAAGG    887

BSNT_00528___    888 GCCTCGCGTAGCATTGACACTGATGAAAAACCTTGGAATTTCTTCAATTT    937
                     |.||||.||.||..|.||.||.||||||||||||||.|||||.|||||.|
BPUM_0270___o    888 GGCTCGTGTTGCGCTTACGCTCATGAAAAACCTTGGGATTTCGTCAATCT    937

BSNT_00528___    938 ATGCAGTGGATAAACAAAAGAAATTGTTAGGTGTTATCTATGCGTCTGAT    987
                     |||||||.|||||..|||||.|.||.|||||||||||.|.|||....|..
BPUM_0270___o    938 ATGCAGTCGATAAGAAAAAGCATTTATTAGGTGTTATTTCTGCACAAGCA    987

BSNT_00528___    988 GCGAAAAAAGCGGCTGAGTCTGATTTGTCACTTCAAGACA----TCTTGA   1033
                     ||||||||.|||||.||..|..||..|||.||   |||.|    ||||| 
BPUM_0270___o    988 GCGAAAAAGGCGGCAGAAACGAATACGTCGCT---AGAAACTGTTCTTG-   1033

BSNT_00528___   1034 ATACAGAATTTACGACTGTACCAGAGAATACGTATCTGACTGAGATTTTT   1083
                     |||.|||||||||.||.|||...||...|||||||.||||.||.||.|||
BPUM_0270___o   1034 ATAAAGAATTTACAACCGTATTGGAATCTACGTATTTGACAGAAATCTTT   1083

BSNT_00528___   1084 GACGTTGTGTCTGATGCGAATATTCCAATTGCGGTTGTGGATGAGAAGCA   1133
                     ||.|..||||||||||||||.|||||.|||||.|||||.||||||||..|
BPUM_0270___o   1084 GATGCAGTGTCTGATGCGAACATTCCGATTGCCGTTGTTGATGAGAAAAA   1133

BSNT_00528___   1134 AAGAATGAAAGGAATTGTCGTAAGAGGCGCGCTGATTGGCGCACTTGCCG   1183
                     .||||||||.||.|||||.||.|||||.||..|.|||||.||..|..|.|
BPUM_0270___o   1134 CAGAATGAAGGGCATTGTGGTCAGAGGTGCATTAATTGGTGCGTTATCAG   1183

BSNT_00528___   1184 GCAATAACGAGTATATCA--------------ATGCTGAAGGCACTAAAG   1219
                     |.|||.|.||||||||||              |.|||..|||.|.|.|  
BPUM_0270___o   1184 GTAATGATGAGTATATCAACATGTCTTCTAACAAGCTTGAGGAAATTA--   1231

BSNT_00528___   1220 AACAAACACAAGATCCTTCTGCACAGGAGGT-GAAGTAA   1257
                        ||||||||||.||||||||||||||||| ||| |||
BPUM_0270___o   1232 ---AAACACAAGAGCCTTCTGCACAGGAGGTAGAA-TAA   1266


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