Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00520 and BPUM_0269
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:20
# Commandline: needle
# -asequence dna-align/BSNT_00520___yceH.1.24716.seq
# -bsequence dna-align/BPUM_0269___yceH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00520___yceH-BPUM_0269___yceH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00520___yceH-BPUM_0269___yceH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00520___yceH
# 2: BPUM_0269___yceH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1123
# Identity: 835/1123 (74.4%)
# Similarity: 835/1123 (74.4%)
# Gaps: 59/1123 ( 5.3%)
# Score: 3020.5
#
#
#=======================================
BSNT_00520___ 1 ATGAC-------AACAGAAA----ATCAAAATCCGCTTGTTC--TCGATA 37
||||| |||.|||| |||| .||| |.||||
BPUM_0269___y 1 ATGACAAATACAAACGGAAATGACATCA----------TTTCAATTGATA 40
BSNT_00520___ 38 AAAATGAAGAGATTTCCCAGCAAAAAGCTGACGATATCCGTCTTCAGCTC 87
|| ||.||.||.|||....|.||.||.||||||||.||..|||||||.
BPUM_0269___y 41 AA---GAGGAAATCTCCATTGAGAAGGCAGACGATATTCGCGTTCAGCTT 87
BSNT_00520___ 88 CGTCAGGAACCAGAAGTGAAGCGGCTTGCTCAACAAATTGACGTTAAAAA 137
||..|.||||||||||||.|.....|||||..|||.||.||.|..|||||
BPUM_0269___y 88 CGAAATGAACCAGAAGTGCAAAATATTGCTAGACAGATCGATGCGAAAAA 137
BSNT_00520___ 138 CCAAATGGAGCTGCTTGAGTACGGCAAGGAGCCGGCCGTTGAAATATCCA 187
.||..|||||||.|||||.|||||.||..|||||||.||.|||||.||.|
BPUM_0269___y 138 TCAGCTGGAGCTACTTGAATACGGAAAACAGCCGGCTGTAGAAATTTCTA 187
BSNT_00520___ 188 AGTTCTCTGACCGCA-TCTTGGGGATGATGAAAACAACAAGTGTGACAGA 236
|||||||.||.||.| |||| ...||||||....|||||||.|||||.||
BPUM_0269___y 188 AGTTCTCAGATCGTATTCTT-TCAATGATGCGTTCAACAAGCGTGACTGA 236
BSNT_00520___ 237 CTCCGGCACAATGCTGACTCAGCTTGGGAAAATCATGGACCGCTTTGACA 286
.||.||.||.||||||||.||||||||.|||||.|||||.||.|||||.|
BPUM_0269___y 237 TTCAGGGACGATGCTGACGCAGCTTGGAAAAATTATGGATCGTTTTGATA 286
BSNT_00520___ 287 AAAATGATTTTGATGAGCCAAAG---GGATTAATGGCGAAAATTTTCAAA 333
|||||||||||||.||||||||| ||.|||.||.|.|||||.||.||.
BPUM_0269___y 287 AAAATGATTTTGACGAGCCAAAGGGTGGCTTACTGTCAAAAATCTTTAAG 336
BSNT_00520___ 334 CGCGGCGGCAGCATGATTGAAAAAATCTTTAAAAAGTATCAGACGCTTGG 383
|||||||||||||||||||||||.||.||.|..||.|||||.|||||.||
BPUM_0269___y 337 CGCGGCGGCAGCATGATTGAAAAGATTTTCAGTAAATATCAAACGCTCGG 386
BSNT_00520___ 384 CGGAGAGATTGAAAAAATCCACGTTGAGATTTCA--AAATACAAAGATGA 431
.|.|||.|||||||||||..|.||.||.| ||| |||||.|||||.||
BPUM_0269___y 387 TGCAGAAATTGAAAAAATTAATGTGGAAA--TCAGTAAATATAAAGACGA 434
BSNT_00520___ 432 GATGACGAAGACGAACT-ACACGCTCGATGAAATGTATGAAAACAATATC 480
.|||||.||..|| ||| ..|||||.||.|||||||||||..|.||.||.
BPUM_0269___y 435 AATGACCAAATCG-ACTGTGACGCTTGAAGAAATGTATGAGCATAACATT 483
BSNT_00520___ 481 AAATACTATATGGAGCTTGAAAAATACGTCGTTGCCGGGCAGATGAAACT 530
.||||||||||||||||||||||.||.|||||||||||.||.||||||.|
BPUM_0269___y 484 CAATACTATATGGAGCTTGAAAAGTATGTCGTTGCCGGTCAAATGAAAAT 533
BSNT_00520___ 531 GGAAGAGAT----GCAGTCGATCCTTCCTTCATATGAGGAAAAAGCGGCA 576
.||.|| || |||.| |..|||||||.|||||.|||||||||||.
BPUM_0269___y 534 CGAGGA-ATTAAAGCAAT---TGGTTCCTTCTTATGAAGAAAAAGCGGCT 579
BSNT_00520___ 577 AGCGGAAACCAGCTGGCGCAAATGCAGCTCGATACATTGCGCAACGGCAT 626
||.||||||||.||.||.||||||.||||.||||||.|.||.|||||.||
BPUM_0269___y 580 AGTGGAAACCAACTAGCACAAATGGAGCTTGATACACTTCGTAACGGTAT 629
BSNT_00520___ 627 TCAGGCGCTTGAGGAACGGGTGTATGATCTGGACATGGCACGGATGGTGG 676
|||.||..|.||.||.||.||.|||||.||.||.||||||||||||||.|
BPUM_0269___y 630 TCAAGCATTGGAAGAGCGTGTATATGACCTTGATATGGCACGGATGGTAG 679
BSNT_00520___ 677 CGCTTCAAACCGCACCTCAAATCCGTCTCCTGCAGCGAGGAAATGCAAAG 726
|.||||||||.|||||.|||||.|||.|..|||||||.||.|||.|.||.
BPUM_0269___y 680 CTCTTCAAACGGCACCGCAAATTCGTTTATTGCAGCGTGGGAATACGAAA 729
BSNT_00520___ 727 CTGATCGGGAAAATCAACTCCGCGTTTATCATTACCATTCCGATTTTCAA 776
||.|||||.|||||||||||.|||||.|||||.||.||.||.||.||.||
BPUM_0269___y 730 CTCATCGGTAAAATCAACTCAGCGTTCATCATCACGATACCTATCTTTAA 779
BSNT_00520___ 777 AAACGGCATTATTCAGGCTGTTACGGTGAAACGGCAAAAGCTTGTGGCTG 826
|||.|||||.|||||.|||||.||.|.||||.|.||||||||||||||||
BPUM_0269___y 780 AAATGGCATCATTCAAGCTGTGACAGCGAAAAGACAAAAGCTTGTGGCTG 829
BSNT_00520___ 827 ATTCCATGAGCGAGCTTGACCGCCGGACAAACGAGATGCTGAAACGAAAT 876
||||.|||||.|||||.||..|..|.|||||.||.|||||||||||||||
BPUM_0269___y 830 ATTCAATGAGTGAGCTGGATAGAAGAACAAATGAAATGCTGAAACGAAAT 879
BSNT_00520___ 877 GCTGAAAACATCTCGAGCCAAAGTGTTGAAATTGCCAGAATGGCCGGCAG 926
|||||||||||.||.||||||||.||.||.|||||||.|.||.|.||..|
BPUM_0269___y 880 GCTGAAAACATTTCAAGCCAAAGCGTGGAGATTGCCAAATTGTCTGGACG 929
BSNT_00520___ 927 ACCGAGCATAGATATTGAAACGATCGAATCGTCTTGGAACACGATTGT-C 975
.||.||.||.||.||||||||.||.|||||.||.|..||.|||||||| |
BPUM_0269___y 930 TCCAAGTATCGACATTGAAACAATTGAATCTTCCTTTAATACGATTGTAC 979
BSNT_00520___ 976 AGCGGCATGCAGGAAACAAAACAAATCGAGGAAGAAAACAAACGCCTCCG 1025
| .||.|||.|.||.||||||||.|||||.||||||||||||||..|.||
BPUM_0269___y 980 A-AGGGATGAAAGAGACAAAACAGATCGAAGAAGAAAACAAACGATTACG 1028
BSNT_00520___ 1026 CGAAGACGGCGCGAGACGAA---TTGCACAGCTTCAGGATAATATTAAAA 1072
||||||.||..|.|.|||.| ||| ||.|.||.|||||||||||..
BPUM_0269___y 1029 CGAAGATGGAACAAAACGTATGCTTG---AGTTGCAAGATAATATTAAGC 1075
BSNT_00520___ 1073 AAGCAGCATTGCAGCAA---TAA 1092
.|||.|||.| || || |||
BPUM_0269___y 1076 GAGCTGCACT--AG-AATCCTAA 1095
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