Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00514 and BPUM_0261

See Amino acid alignment / Visit BSNT_00514 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:20
# Commandline: needle
#    -asequence dna-align/BSNT_00514___yceD.1.24716.seq
#    -bsequence dna-align/BPUM_0261___yceD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00514___yceD-BPUM_0261___yceD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00514___yceD-BPUM_0261___yceD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00514___yceD
# 2: BPUM_0261___yceD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 594
# Identity:     441/594 (74.2%)
# Similarity:   441/594 (74.2%)
# Gaps:          24/594 ( 4.0%)
# Score: 1601.0
# 
#
#=======================================

BSNT_00514___      1 ATGACAATTTCATTGGCAAAAGGACAAAAAGTAGATTTAACAAAAACAAA     50
                     .||..||||||.||.||.|||||.||||||.|.||||||||||||||.||
BPUM_0261___y      1 GTGGGAATTTCTTTAGCGAAAGGTCAAAAAATTGATTTAACAAAAACGAA     50

BSNT_00514___     51 TCCGGGTCTTTCAAAGGTTGTTGTCGGTTTAGGCTGGGATACGAACAAGT    100
                     |||.|||.|..||||.||.||.||.|||.|.|||||||||...|||||||
BPUM_0261___y     51 TCCAGGTTTAACAAAAGTAGTCGTAGGTCTTGGCTGGGATGTAAACAAGT    100

BSNT_00514___    101 ATGACGGCGGACACGACTTTGATCTTGACTCAAGTGTGTTTTTGTTAGAC    150
                     ||||.||||||||.|||||||||||.|||.||||.||.||..|.|||||.
BPUM_0261___y    101 ATGATGGCGGACATGACTTTGATCTAGACGCAAGCGTATTCCTTTTAGAT    150

BSNT_00514___    151 GCCGCAGGCAAATGCGC---GTCACCAAACGACTTTATTTTCTACAACCA    197
                     ||.|||||.|||   ||   .||.|||...||||||.||||||||||.||
BPUM_0261___y    151 GCAGCAGGGAAA---GCAAACTCTCCATCTGACTTTGTTTTCTACAATCA    197

BSNT_00514___    198 GCTTGAA-----GGCGGCAACGGTTCAG--TCGTTCATTCAGGCGACAAC    240
                          ||     |||||...|||  .||  ||||.|||.|||||||.|||
BPUM_0261___y    198 -----AACAACTGGCGGTGGCGG--AAGTATCGTACATACAGGCGATAAC    240

BSNT_00514___    241 CTGACTGGTGCTGGCGAAGGCGACGATGAGAATGTAAAAGTAAATC--TC    288
                     |..||.||||..||.||.||.||.||.|||.|.||.||.||..|||  ||
BPUM_0261___y    241 CGTACAGGTGAAGGAGACGGAGATGACGAGCAGGTCAATGTTGATCTTTC    290

BSNT_00514___    289 AGCGCTGTACCGGCAAACATTGATAAAATCTCATTTGTTATTACCATTCA    338
                     |  .|||||||.||.|..|||||.||||||||.||.||.|||||.||.||
BPUM_0261___y    291 A--ACTGTACCAGCGAGTATTGAGAAAATCTCCTTCGTCATTACAATCCA    338

BSNT_00514___    339 CGATGCAGAAGCGCGCAGCCAAAACTTTGGACAAGTATCAAACGCGTTTG    388
                     .||.||||||||.||||||||||||||||||||.||.||.|||||.|..|
BPUM_0261___y    339 TGACGCAGAAGCACGCAGCCAAAACTTTGGACAGGTTTCTAACGCTTACG    388

BSNT_00514___    389 TCCGCATTGTAAATGAAGAAACAAATGAAGAGCTCATCCGTTACGATCTT    438
                     ||||.|||.||||||.||.|.||||||||||.||.||.||.||||||.|.
BPUM_0261___y    389 TCCGTATTTTAAATGCAGCATCAAATGAAGAACTGATTCGCTACGATTTG    438

BSNT_00514___    439 GCAGAAGATTTCTCTATTGAAACGGCAATCATTGCAGGGGAGCTTTACAG    488
                     |||||.||.|||||||||||.||.||.||.||||.|||.||..|.|||.|
BPUM_0261___y    439 GCAGAGGACTTCTCTATTGAGACAGCGATTATTGTAGGTGAATTATACCG    488

BSNT_00514___    489 ACATAACGGCGAGTGGAAATTCTCCGCAATCGGCTCAGGCTACCAAGGCG    538
                     .||...|||.||.|||||||||||.||..||||.||.|||||.|||||||
BPUM_0261___y    489 TCACGGCGGAGAATGGAAATTCTCAGCTGTCGGATCGGGCTATCAAGGCG    538

BSNT_00514___    539 GCCTTGCCCGCATTGCAACAGACTACGGTTTGCAAGTCGGTTAA    582
                     |.|||||||||||||||||.||||.|||.||..|..||||.|||
BPUM_0261___y    539 GACTTGCCCGCATTGCAACGGACTTCGGATTAGATATCGGGTAA    582


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