Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00512 and BPUM_0260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:20
# Commandline: needle
# -asequence dna-align/BSNT_00512___yceC.1.24716.seq
# -bsequence dna-align/BPUM_0260___yceC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00512___yceC-BPUM_0260___yceC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00512___yceC-BPUM_0260___yceC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00512___yceC
# 2: BPUM_0260___yceC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 625
# Identity: 435/625 (69.6%)
# Similarity: 435/625 (69.6%)
# Gaps: 47/625 ( 7.5%)
# Score: 1427.5
#
#
#=======================================
BSNT_00512___ 1 GTGGCAATTTCTTTAGAAAAAGGTCAACGAATTGATTTAACAAAAGGAAA 50
.||||.|||.|.|||||||||||||||||.|||||||||||||||||.||
BPUM_0260___y 1 TTGGCGATTACATTAGAAAAAGGTCAACGTATTGATTTAACAAAAGGCAA 50
BSNT_00512___ 51 AGCCGGTCTGTC-AAAATTGATGGTCGGTCTCGGCTGGGACCCAGTGTCC 99
|||.||.||..| ||.||| .|.||.||.||.||||||||||||||.||.
BPUM_0260___y 51 AGCAGGGCTAACGAATATT-CTTGTTGGACTTGGCTGGGACCCAGTTTCA 99
BSNT_00512___ 100 TCAGGCGGAGGATTCTTCAGCAAACTGCT---TGGCGGAGGCGGTCCGAA 146
..||||||.|||||.||..|.||.|||.| ||||||||||||..|..|
BPUM_0260___y 100 CAAGGCGGCGGATTTTTAGGTAAGCTGTTTGGTGGCGGAGGCGGCGCTGA 149
BSNT_00512___ 147 TATCGACTGTGATGCTTCAGTGCTGATGCTGGAAAACGGAAAATTCACCG 196
|||.||.|||||.|||||||||||.||||||.||||.|..||.||....|
BPUM_0260___y 150 TATTGATTGTGACGCTTCAGTGCTCATGCTGAAAAATGATAAGTTTGTTG 199
BSNT_00512___ 197 AAAAGAAAAATCTGATTTATTTCGGCAACCTGAAAAGCCGCTGCGGCGGT 246
||||.|||.||.|||||||.||.||.|||.||||||||...||||||.||
BPUM_0260___y 200 AAAATAAAGATTTGATTTACTTTGGTAACTTGAAAAGCAAGTGCGGCAGT 249
BSNT_00512___ 247 GTACAGCATACAGGCGACAACCTGACGGGTGACGGTGCGGGCGATGACGA 296
||..||||||||||.|||||||||||.|||||.||.|..||.|||||.||
BPUM_0260___y 250 GTTGAGCATACAGGTGACAACCTGACAGGTGAAGGAGACGGAGATGATGA 299
BSNT_00512___ 297 GCAAATTATGATAGATTTAGATAAAGTGCCTGGAAACATCGATAAGCTTG 346
.|||.|..|..|..|.|||...||.|||||.||.||..|..||||..|.|
BPUM_0260___y 300 ACAAGTCCTCGTCAACTTAAGCAAGGTGCCAGGCAATGTGAATAAATTGG 349
BSNT_00512___ 347 TATTTGTAGTGAACATTTACGATTGTGTCAGAAGAAAACAAGATTTCGGC 396
|.||||||||||||||.||.|||....|.||||||||.|||.||||.||.
BPUM_0260___y 350 TGTTTGTAGTGAACATCTATGATGCACTTAGAAGAAATCAACATTTTGGT 399
BSNT_00512___ 397 ATGATTCAAAATGCGTTTATCCGCGTAGTTGA----TCAATCTAATCACG 442
||||||||||||||||..||.|||.|.||.|| ||||.| ||||
BPUM_0260___y 400 ATGATTCAAAATGCGTACATTCGCATTGTCGATCGTTCAAAC-AATC--- 445
BSNT_00512___ 443 AGGAAATGCTCAAGTACAATTTGAGAGACAATTACGCCGGCAGAACAAGC 492
|.|||.|..|.||.||.|||||.|.|||..|.||.||.||.|.||||
BPUM_0260___y 446 AAGAACTAGTGAAATATAATTTAAAAGATGAATATGCAGGGAAAACA--- 492
BSNT_00512___ 493 CTGATTACA-----GCAGAAATCTACCGCAGCGGCAGTGAGTGGAAGTTT 537
|.|||| | |.|||..|.||.|||..||..|.|||.|||||||||
BPUM_0260___y 493 -TCATTA-ATCGTTGGAGAGCTTTATCGCCACGAAAATGAATGGAAGTTT 540
BSNT_00512___ 538 GCAGCGATTGGTGAAGG-CATG-----AACGATACG-AGATTAGAAGATA 580
| |||.||.||| .||| ||||||.|| ||.|| |..||||
BPUM_0260___y 541 G------TTGCTGTAGGAAATGGTACAAACGATGCGAAGCTT-GCCGATA 583
BSNT_00512___ 581 TTATCAGCCGA-----TACGTATAA 600
||| ||| |||.|.|||
BPUM_0260___y 584 TTA-----CGAGAAACTACATTTAA 603
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