Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00502 and BPUM_0257

See Amino acid alignment / Visit BSNT_00502 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:19
# Commandline: needle
#    -asequence dna-align/BSNT_00502___ycdF.1.24716.seq
#    -bsequence dna-align/BPUM_0257___ycdF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00502___ycdF-BPUM_0257___ycdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00502___ycdF-BPUM_0257___ycdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00502___ycdF
# 2: BPUM_0257___ycdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 803
# Identity:     570/803 (71.0%)
# Similarity:   570/803 (71.0%)
# Gaps:          49/803 ( 6.1%)
# Score: 1928.0
# 
#
#=======================================

BSNT_00502___      1 ATGTACAAAGATTTAACCGGAAAAACAGCGATTGTGACAGGGTCTTCAAA     50
                     |||||..|||||||||..|||||||||||.|||||.|||||.||||||||
BPUM_0257___y      1 ATGTATCAAGATTTAAAAGGAAAAACAGCCATTGTCACAGGTTCTTCAAA     50

BSNT_00502___     51 AGGAATCGGGAAAGCCATTGCGGAACGGTTCGGACAGGAGAAAATGAATG    100
                     |||||||||..|||||||.||...|||.||.|||||.|||.|.|||||||
BPUM_0257___y     51 AGGAATCGGACAAGCCATCGCATTACGATTTGGACAAGAGCAGATGAATG    100

BSNT_00502___    101 TTGTTGTAAATTACCACAGCGACCCGTCT------GGAGCAGATGAAACT    144
                     |.|||||.||.||..|..|.||      |      ||.||.||.|||||.
BPUM_0257___y    101 TGGTTGTGAACTATAAAGGTGA------TGAAGAGGGTGCTGAAGAAACG    144

BSNT_00502___    145 CTGGAAATCATTAAGCAGAACGGAGGGAAAGCCGTCGCAGTTGAGGCGGA    194
                     .|..||..||||.|||||||.|||||.|..||.||...|||..|.|||||
BPUM_0257___y    145 GTACAAGCCATTCAGCAGAATGGAGGTAGGGCGGTGAAAGTACACGCGGA    194

BSNT_00502___    195 CGTGTCAAAAGAAGAGGGGATTCAGGCGCTCTTGGACACAGCTTTAGAGC    244
                     .||.||.|||||.||.||.|||||.|||.||.||||.|||||..|.||||
BPUM_0257___y    195 TGTCTCCAAAGAGGATGGCATTCAAGCGATCATGGATACAGCCCTGGAGC    244

BSNT_00502___    245 ATTTCGGCACGCTCGATGTGATGGTAAACAACTCCGGTTTTAACGGTGAT    294
                     |||||||.||..||||||||.|.||.||.||.||.||.|||||.|||||.
BPUM_0257___y    245 ATTTCGGTACAGTCGATGTGTTCGTCAATAATTCAGGATTTAATGGTGAA    294

BSNT_00502___    295 GAGGCGATGCCGCATGAGATGAGTCTTGAAGATTGGCAGAGAGTAATTGA    344
                     ||.|||||||||||||||||||..||.||..|.|||||.|.|||.|||||
BPUM_0257___y    295 GAAGCGATGCCGCATGAGATGACGCTCGAGCAATGGCAAAAAGTTATTGA    344

BSNT_00502___    345 TGTCAATGTTACCGGAACCTTTCTGGGAGCGAAAGCAGCACTTAACCACA    394
                     |||.|||.|.||.||..|||||||.||.||.||.||.|||.|...|.|.|
BPUM_0257___y    345 TGTGAATATCACAGGCGCCTTTCTAGGGGCAAAGGCTGCAATCGCCTATA    394

BSNT_00502___    395 TGATGAAAAACA--ATATCAA--GGGCAATGTGCTGAATATCTCAAGTGT    440
                     ||||  |.|.||  |.|||||  ||.|.||.|  |.|||||.||.|||||
BPUM_0257___y    395 TGAT--AGAGCATGACATCAAAGGGTCTATTT--TAAATATATCCAGTGT    440

BSNT_00502___    441 TCATCAGCAGATTCCGCGCCCTGTCAACGTTCAGTATTCCACATCCAAAG    490
                     .||||||.|.||.||||||||..||||.|||||.||||||||.|||||.|
BPUM_0257___y    441 CCATCAGGAAATACCGCGCCCGTTCAATGTTCACTATTCCACTTCCAAGG    490

BSNT_00502___    491 GCGGCATCAAGATGATGACGGAAACGCTGGCGCTCAATTATGCGGATAAG    540
                     ||||.||.||.||||||||..||||||||||.||..|||||||||  |||
BPUM_0257___y    491 GCGGAATGAACATGATGACAAAAACGCTGGCTCTTGATTATGCGG--AAG    538

BSNT_00502___    541 --GAAATCCGCGTCAATGCGATAGCGCCCGGCACCATTGCCACAGAATCA    588
                       |..||.||..||||||||||.||.||.||.||.||.||.||.|||||.
BPUM_0257___y    539 CAGGTATTCGGATCAATGCGATTGCACCAGGTACAATGGCGACCGAATCG    588

BSNT_00502___    589 AATGTTGATACGAAAAAGGAAGAGAGCAGGCAAAAACAA-------TTGA    631
                     ||||.||||..|.|..|.|||.|||      ||||||||       ||| 
BPUM_0257___y    589 AATGATGATTTGCAGGATGAACAGA------AAAAACAAAAGCAGCTTG-    631

BSNT_00502___    632 AAAAAATCCCGATGCAAGCCTTCGGAAAGCCTGAAGAAG--TGGCGGCAG    679
                     ||||.||.||||||..|||.||.||..|.|| ||||.||  ||| |.|.|
BPUM_0257___y    632 AAAAGATTCCGATGAGAGCATTTGGTGAACC-GAAGGAGATTGG-GTCCG    679

BSNT_00502___    680 CAGCGGCTTGGCTCGTATCTGAGGAAGCAAGCTATGTGACCGGCACAACA    729
                     |.||.||.|..|||||||||.|||||||....|||.|.||.|||||  ||
BPUM_0257___y    680 CTGCTGCATTTCTCGTATCTAAGGAAGCTTCGTATATCACAGGCAC--CA    727

BSNT_00502___    730 CTT--TTCGTCGATGGCGGGATGACACTTTATCCGTCTCAGCT---TGAA    774
                     |||  ||.||.|||||.||.|||||.|||||.||.|||||..|   |||.
BPUM_0257___y    728 CTTTATTTGTGGATGGAGGAATGACGCTTTACCCTTCTCAAATCAATGAT    777

BSNT_00502___    775 TAG    777
                     ||.
BPUM_0257___y    778 TAA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00502 and BPUM_0257

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
