Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00482 and BPUM_0247
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:18
# Commandline: needle
# -asequence dna-align/BSNT_00482___yccF.1.24716.seq
# -bsequence dna-align/BPUM_0247___yccF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00482___yccF-BPUM_0247___yccF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00482___yccF-BPUM_0247___yccF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00482___yccF
# 2: BPUM_0247___yccF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 704/1232 (57.1%)
# Similarity: 704/1232 (57.1%)
# Gaps: 301/1232 (24.4%)
# Score: 1759.0
#
#
#=======================================
BSNT_00482___ 1 GTGGGAAAAGTGAAACGAAATGCCCCTTGCCCATGCGGCAGCGGCAAGAA 50
.||||||||.|.|||||||||||.|..|||||||||||.|||||.||.||
BPUM_0247___y 1 TTGGGAAAAATTAAACGAAATGCGCTCTGCCCATGCGGAAGCGGAAAAAA 50
BSNT_00482___ 51 ATATAAAAAATGCTGCGGAAGT--AAAGTTGTCGACTTCCCGGCG--GAA 96
|||||||.|.|||||.| || ||||| |.|||| |||
BPUM_0247___y 51 ATATAAACATTGCTGTG---GTCAAAAGT----------CAGGCGGAGAA 87
BSNT_00482___ 97 CTAGCGGC------------AAAAGAAGCGAAACAAATTCAGGAAGACTT 134
|.|.||.| .||.|||||...||||.||||..|.||.||
BPUM_0247___y 88 CAAACGTCTGAGCTTGTGTTTAAGGAAGCTGTACAAGTTCAAAAGGATTT 137
BSNT_00482___ 135 AGTGGAGTATGCCTTCACAGTACAT-AGAGA------AAGCATTTCAGGC 177
|.||.|.|||||.|||.|...|||| ||||| ||.||.||||
BPUM_0247___y 138 AATGAATTATGCATTCTCTAAACATCAGAGAGCCATCAATCAATTCA--- 184
BSNT_00482___ 178 TTTATCAACCAGCATGA------TTTTCTTTCTGCTATGGACAGACAGAC 221
||| |||| |||||||.|.|.||||||.|.|.|.||
BPUM_0247___y 185 -TTA---------ATGAGTTTTCTTTTCTTGCAGATATGGATAAAGAAAC 224
BSNT_00482___ 222 GAAAGACATCAGCGTATTTAACTTAGGAATCTGGGGAATCTTCTTCCACC 271
|.||.|.|||...||.|||.|.||..|..|.|||||.|||||.||||..|
BPUM_0247___y 225 GCAACAAATCTCGGTCTTTCATTTGAGTGTATGGGGCATCTTTTTCCGTC 274
BSNT_00482___ 272 CGCTTGCTG----GTGAGAAGACAATCTTCGAAGAGTACCTTCAGAAAAA 317
|..|..|.| |..|||| ||.||||||.||||.|.|| |.|.|||.|
BPUM_0247___y 275 CATTAACAGACCAGAAAGAA-ACCATCTTCCAAGAATTCC-TGACAAAGA 322
BSNT_00482___ 318 AGGC----GATTCGATCACTCGTCCGAAAACGCGTGAGA-----TCGTAG 358
|.|| ||| ||.||.||||||||||| |.| |.||..
BPUM_0247___y 323 AAGCGGAAGAT---ATTACCCGTCCGAAAAC-----AAAACAAGTGGTTC 364
BSNT_00482___ 359 AATCATGG-CAGAGCATGACGCC-----TGC-TTTATTGCTGCTGAAGGA 401
|||||||| |||| ||||...|| ||| |||||| |
BPUM_0247___y 365 AATCATGGACAGA-CATGGAACCATCTTTGCTTTTATT-----------A 402
BSNT_00482___ 402 CCTGAA-----GGA--AGGCATCATTCACTTTGAAGATGTGATTACGGCA 444
..|||| ||| ||.| || ||.|||||||..||.||.|.||.||.
BPUM_0247___y 403 AATGAAAAAACGGACGAGTC-TC-TTTACTTTGAGAATATGGTGACAGCT 450
BSNT_00482___ 445 AAACAATTCGAAGTGG-----AAATGGACGCCAGCAATCAAGAC----CT 485
.||.|..|.|||||.| ||| ||.| ||||| || ||
BPUM_0247___y 451 GAAAAGGTTGAAGTAGATGTAAAA------CCGG--ATCAA-ACAGTGCT 491
BSNT_00482___ 486 TCCTCCAGTGGGAAGCCTGATTCTTGGATACCCAATCCA---CGAAGCGG 532
.|||..|..||||||.||..|.|||||||.|||..|.|| .||| |
BPUM_0247___y 492 ACCTGAAAAGGGAAGTCTCGTGCTTGGATTCCCTGTTCAATTTGAA---G 538
BSNT_00482___ 533 AAAAAGCAGAATTCTTCATGCAGTTCACGATCTTCCCGGTGAAGAG--AA 580
||||||||||.||.|||||.||.|..||.||.||..|| .||||| .|
BPUM_0247___y 539 AAAAAGCAGAGTTTTTCATTCAATATACAATGTTTGCG--AAAGAGTTTA 586
BSNT_00482___ 581 CAGAAGCGCT--------------GATCAGCAAGGTGAAGAAATATGCGG 616
||||..|||| | |||||..|.||||| .|||||.||
BPUM_0247___y 587 CAGATACGCTTCTTCTTCAAGTTCG-TCAGCTTGTTGAAG-CATATGAGG 634
BSNT_00482___ 617 ---ATGCCGCTGTGAAGGACGGCAAAACGCCGGAGGAC-TTCATGAAGCA 662
||| ||.|.||| ||.||.|| ||.|||| .|
BPUM_0247___y 635 CAAATG-------GAGGAACG---------CGCAGCACATTTATGA--GA 666
BSNT_00482___ 663 GGA--ATTCAACAACGTTCTGTTCGCGT---TGTTAGCTGAGAAAGATGA 707
|.| ||||....||| ||||.|.|| ||||.||..||.||||.|.
BPUM_0247___y 667 GAATCATTCCCTGACG---TGTTGGAGTGCATGTTTGCAAAGCAAGAAGT 713
BSNT_00482___ 708 AGAGCCAAAAGCAGAGA---------AAGCGGAAG------------TAA 736
||| |.||.|.||.| ||.|.|||| |||
BPUM_0247___y 714 AGA---AGAATCGGAAACATTTGCTCAAACAGAAGGCGATACAGGTTTAA 760
BSNT_00482___ 737 ---------GCACTGTTGAGTGGGCAA---ACG----ACTTGGAGAAAGA 770
||| |.||.||||||| ||| ||| .||
BPUM_0247___y 761 CAGCAGATCGCA---TGGACTGGGCAAGTGACGTTCAACT-------GGA 800
BSNT_00482___ 771 AACCGCT--GCGGCTATTGAAGAAGGCATGA------GCGGGGA--AGAG 810
|||.||| ||.| ||||||||.||.|||| .|||||| |.||
BPUM_0247___y 801 AACTGCTAAGCTG--ATTGAAGATGGAATGAAAGAACACGGGGACCAAAG 848
BSNT_00482___ 811 TATCC-GACTGAATTGATCCCAGC-TGTT-ATTGCCATCTGGAAAACATT 857
|| |||||| || || .||| |.|| |.||||||.|.|.
BPUM_0247___y 849 ---CCTGACTGA--TG------GCGCGTTAACTG---TGTGGAAAGCCTA 884
BSNT_00482___ 858 CTGCGAGAAAAAATCACCTGTCATCAG-AAAGCCGGAAGCTTTTGCGGCG 906
.||.||..|.|||||||||||.|||.| |||| |.|.|.|.|||||.|||
BPUM_0247___y 885 TTGTGATCAGAAATCACCTGTGATCCGTAAAG-CAGCATCATTTGCTGCG 933
BSNT_00482___ 907 GCAGTTGAATATTATGTAAACGCGATTTCTCTT---AACGGCGCGTCCG- 952
|.|.|.||||||||..|..| |||.||| |.||..|| .|||
BPUM_0247___y 934 GGAATCGAATATTACATTCA------TTCACTTGCAAGCGATGC-CCCGC 976
BSNT_00482___ 953 TTTCCCAGGCTAAACTGGCGAAAAAATACGGCGTCAGTGCATCAACGATT 1002
||||.||.||..||.|.||||||||.||.|||.|.|||||.||.||..|.
BPUM_0247___y 977 TTTCTCAAGCGCAAATAGCGAAAAAGTATGGCATTAGTGCGTCTACTGTA 1026
BSNT_00482___ 1003 TCCAGCCGTTACAAAGAAATTGAAAGCACGCTGCAAGATGAAGCAGATCG 1052
||.|||||||..|||||.||.||||...||.||.||||.||
BPUM_0247___y 1027 TCGAGCCGTTTTAAAGATATCGAAAAAGCGGTGAAAGAAGA--------- 1067
BSNT_00482___ 1053 TTTTGCACAAG------CGTTATCCTCATAA- 1077
||||| ||.||| |
BPUM_0247___y 1068 ------ACAAGAGGCGACGGTAT-------AG 1086
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