Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00434 and BPUM_0246
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:18
# Commandline: needle
# -asequence dna-align/BSNT_00434___ycbB.1.24716.seq
# -bsequence dna-align/BPUM_0246___ycbB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00434___ycbB-BPUM_0246___ycbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00434___ycbB-BPUM_0246___ycbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00434___ycbB
# 2: BPUM_0246___ycbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1045
# Identity: 618/1045 (59.1%)
# Similarity: 618/1045 (59.1%)
# Gaps: 203/1045 (19.4%)
# Score: 1722.5
#
#
#=======================================
BSNT_00434___ 1 ATGCGTTTTTTTATTGCAGATGATGACCGTGCAGTGCGGTCAATTTTAAG 50
|||||.|||||.||||||||||||||.||||||.|.||.||.||||||.|
BPUM_0246___y 1 ATGCGATTTTTCATTGCAGATGATGATCGTGCAATACGCTCGATTTTAGG 50
BSNT_00434___ 51 GCAGATCATTGAGGACGAAGATCTCGGGGAAGCTGTTGGTGAAGCTGACG 100
.||.|||||||||||.||||||.|.||.||.|..||.|.||||||.||.|
BPUM_0246___y 51 CCAAATCATTGAGGATGAAGATTTGGGAGAGGTCGTGGATGAAGCCGATG 100
BSNT_00434___ 101 ACGGAAGCCAAG-TGGA--AG-GGCATATGCTGCAATTTAAGC------A 140
|||| || |||| || ||||.||.| |||.||.| |
BPUM_0246___y 101 ACGG------AGTTGGATTAGAGGCACATTC----ATTGAACCTAAAAAA 140
BSNT_00434___ 141 GATTGATATTTTATTAATCGATCTGTTAATGCCCGGAAGAGACGGCATTG 190
.||.||.||..|..|.||.||.||.||.|||||.|..|||||.||||||.
BPUM_0246___y 141 AATAGACATCCTTCTGATTGACCTTTTGATGCCTGCTAGAGATGGCATTC 190
BSNT_00434___ 191 AGACGATTCGTCAGAT----CCAGAATACGTACTCCGGCAAAATCATAAT 236
|.||.||.|||||.|| ||.||||.|..| |||||||||||.||
BPUM_0246___y 191 AAACCATACGTCATATTCACCCTGAATTCAAA----GGCAAAATCATGAT 236
BSNT_00434___ 237 GATCTCTCAAGTGGAGGCGAAGGAAATGGTCGGGGAAGCGTACTCGCTCG 286
|||.||.|||||.||||||||.||.|||.|.|..|||||.||.....|.|
BPUM_0246___y 237 GATTTCCCAAGTAGAGGCGAAAGAGATGATGGCAGAAGCCTATGAATTAG 286
BSNT_00434___ 287 GCATCGAATATTTTATCCATAAGCCGATTAACCGCATTGAAATTGTCACG 336
|.||||||||||.|||.|||||.||..|.||.||.|||||.||.||||..
BPUM_0246___y 287 GGATCGAATATTATATTCATAAACCTGTCAATCGAATTGAGATCGTCAGT 336
BSNT_00434___ 337 GTTCTCCAAAAGGTGAAGGAGCGGATCGAGCTTGAACACTCGATTGGAGC 386
||..|||.|||.||.|..|||||||||.||||.||..|.||||||...|.
BPUM_0246___y 337 GTGATCCGAAAAGTCATCGAGCGGATCAAGCTGGAGAAATCGATTTATGA 386
BSNT_00434___ 387 CATTCA-----GCATTCTCTA-----AGCCG-----GCTTGTCA------ 415
.||||| .|.|||.|.| .|||| ||.|||.|
BPUM_0246___y 387 TATTCAAGCGTCCCTTCGCCATGTGCTGCCGCTAGAGCCTGTTATTTCTC 436
BSNT_00434___ 416 ATC--------------GGACTGAACGGAAAGCGCGTCCCCAGCAGAAGA 451
||| ||..|||| |.|||| ||.||
BPUM_0246___y 437 ATCATACGACGGGTACTGGTTTGAA-GAAAAG-------------GACGA 472
BSNT_00434___ 452 GTGACAGCGGTTTAAAAGAGGCAGGAACATTCCTGTTGTCCGAGCTGGGC 501
|.||||||||.||...|||.||.||.||.||.||.||.
BPUM_0246___y 473 ------------TGAAAGAGGCGGGGGAATTTCTTTTATCTGAACTAGGA 510
BSNT_00434___ 502 ATGATGGGAGAAGGCGGCGCACATGATCTCATGGCGGTCCTGCAGTATTT 551
||..|.|||||..|.||..|..|.|||.|..|.|.|.||||....||.||
BPUM_0246___y 511 ATTGTTGGAGAGAGTGGATCTAAGGATTTACTAGAGATCCTAATCTACTT 560
BSNT_00434___ 552 AGCA--GAACACGAG-----CAATCC----GAG--------CCGCACGA- 581
| || .||||| || ||||.| ||| || |||.|
BPUM_0246___y 561 A-CATGAAACAC-AGTCAGCCAATTCTCATGAGGTCAATTTCC-CACCAT 607
BSNT_00434___ 582 -AAAACAAAGCCCTTCGCTAAAACAAATATTCACCCAAGTAGCGGTACGG 630
|||.| |||.|||....||||| .||||...||
BPUM_0246___y 608 TAAAGC--AGCTCTTTATCAAAAC----------------GGCGGAGAGG 639
BSNT_00434___ 631 AAGCTGGGGA-CA-GGGGCCTCACAGACG--GAAGTCAATCGCGAAATGA 676
||||| .|| || ||.|| .||.||.| |||||.|...|.|||.|||
BPUM_0246___y 640 AAGCT--AGATCACGGTGC--AACCGATGTCGAAGTGATGAGAGAAGTGA 685
BSNT_00434___ 677 AAGCCTCGGAGCAGCGTATCCGCAGA-GCGATTAT---TCATTCGCTGCA 722
||||..|.||||||||.|| .||| ||| .||| ||||||..||.|
BPUM_0246___y 686 AAGCGGCAGAGCAGCGGAT---TAGACGCG-CTATACATCATTCCTTGAA 731
BSNT_00434___ 723 CCATTTTGCTTCATTGGGCACAACTGATTTTTCGAATCCAAAATTTGAAA 772
.||||||||||||.|.||...|||.|||||.||||||||.||.||.||..
BPUM_0246___y 732 TCATTTTGCTTCACTAGGGTTAACAGATTTCTCGAATCCTAAGTTCGAGC 781
BSNT_00434___ 773 CCTATGCATCGAAATTCTTTGATTTTCCGGTTGTCAGCCAGAAAATAAAA 822
.||||||.||.||.||.|||||.|||.|.|.||||||.||.|.|||.|||
BPUM_0246___y 782 ACTATGCGTCAAAGTTTTTTGACTTTACAGATGTCAGTCAAAGAATGAAA 831
BSNT_00434___ 823 GAA-------------CTCCAATCC-AAGGATGCAAAACCCCTTGCACCT 858
||| |||| |||| .||||| ||.|.
BPUM_0246___y 832 GAAATGCAGAAGACCTCTCC-ATCCGCAGGAT-------------CAACG 867
BSNT_00434___ 859 GCTAGAATAAATATGAAAAAATTCATCCACGTGTTTTTTTTGGAAGCAAA 908
|..|||.|.||||.|||.||.||..|.||..|.||||.|||.||||||||
BPUM_0246___y 868 GGCAGAGTCAATACGAAGAAGTTTGTTCAAATTTTTTATTTTGAAGCAAA 917
BSNT_00434___ 909 GCTTTT--------GCATGAGACGATGAAACAAAGAAGGATATAA 945
||..|| |.|||||..||
BPUM_0246___y 918 GCAGTTATTTGAGGGAATGAGCTGA-------------------- 942
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