Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00431 and BPUM_0244
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:18
# Commandline: needle
# -asequence dna-align/BSNT_00431___ybgJ.1.24716.seq
# -bsequence dna-align/BPUM_0244___glsA1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00431___ybgJ-BPUM_0244___glsA1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00431___ybgJ-BPUM_0244___glsA1.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00431___ybgJ
# 2: BPUM_0244___glsA1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1026
# Identity: 696/1026 (67.8%)
# Similarity: 696/1026 (67.8%)
# Gaps: 87/1026 ( 8.5%)
# Score: 2223.5
#
#
#=======================================
BSNT_00431___ 1 ATGAAAGAATTGAT-AAAAGAGCA----CCAGAAAGACATAA-ACCCGGC 44
|| ||||.|||| |.|..||.|||.|| || ||
BPUM_0244___g 1 ------------ATGAAAACAGCAATTTCTAATAATACACAACAC---GC 35
BSNT_00431___ 45 GTTACAG-CTTC-----ATGATTGGGTTGAATACTATCGCCCTTTTGCCG 88
.|..||| |||| ||.|.||||..|||.|...|||.||.|.|..|.
BPUM_0244___g 36 ATGCCAGTCTTCTGTTGATCAATGGGCAGAAGAAATTCGTCCGTATTACA 85
BSNT_00431___ 89 CCAATGGACAAAGCGCAAACTATATCCCCGCTTTAGGAAAAGTCAATGAT 138
..||||||||||.|||...|||.||.||.||..|.||||||||.|||...
BPUM_0244___g 86 AAAATGGACAAAACGCTGGCTACATTCCAGCACTCGGAAAAGTGAATTCC 135
BSNT_00431___ 139 TCACAGCTCGGCATCTGTGT-ATTGGAGCCTGATGGA--------ACGAT 179
||.||.||.||.|||.|.|| ||.|| .||.|||||| |||||
BPUM_0244___g 136 TCTCAACTTGGTATCAGCGTGATAGG-CCCAGATGGATCATCTGTACGAT 184
BSNT_00431___ 180 GATACACGCCGGCGACTGGAACGTCTCTTTTACCCTGCAAAGCATTTCAA 229
|| ||.||.|||.||||..|.||||||||||||||.||.||||
BPUM_0244___g 185 -AT-------GGTGATTGGGACGTTCCCTTTACCCTGCAAAGTATCTCAA 226
BSNT_00431___ 230 AAGTGATTAGCTTTATTGCCGCCTGCATGAGCCGCGGCATTCCCTATGTG 279
||||.||.||||||||.||.|||||..|..|..|.|||.||||.||.||.
BPUM_0244___g 227 AAGTCATCAGCTTTATAGCTGCCTGTTTAGGAAGAGGCGTTCCTTACGTC 276
BSNT_00431___ 280 CTGGACCGCGTAGATGTCGAGCCGACAGGCGACGCCTTTAATTCAATC-A 328
.||||.||.||||||||.|||||.||.||.||.||.||||||||.||| |
BPUM_0244___g 277 TTGGATCGGGTAGATGTAGAGCCAACTGGTGATGCATTTAATTCCATCTA 326
BSNT_00431___ 329 TCCGGCTCGAAATCAACAAGCCGGGGAAGCCCTTCAATCCCATGATCAAC 378
| ||.||.||.||..|.||.||.|||||||||||.|||||.|||||.||.
BPUM_0244___g 327 T-CGTCTTGAGATGCATAAACCAGGGAAGCCCTTTAATCCAATGATTAAT 375
BSNT_00431___ 379 GCGGGCGCCCTCACCATCGCTTCGATTCTTCCCGGAGAA----TCGGCAT 424
||.||.||..|.|||.|..|.||.||.||||||||| || || |
BPUM_0244___g 376 GCTGGAGCTATTACCGTATCCTCCATCCTTCCCGGA-AAGACTTC----T 420
BSNT_00431___ 425 AC-GAAAAGCTCG-----AGTTTC--TTTACTCGGTGATGGAAACTTTGA 466
|| ||||||||.| |.|||| |||| ||.||||..||.|
BPUM_0244___g 421 ACAGAAAAGCTAGCATATATTTTCGATTTA-------ATCGAAAACTTAA 463
BSNT_00431___ 467 TAGGAAAACGGCCGAGAA----TTCATGAGGAAGTATTCCGTTCTGAATG 512
|||||||.||.|| | ||.||||.||.||.|..|..||.|||||
BPUM_0244___g 464 TAGGAAAGCGTCC----ATCTGTTAATGAAGAGGTTTATCAATCAGAATG 509
BSNT_00431___ 513 GGAAACCGCCCACCGCAACAGAGCGCTGGCCTACTATTTAAAAGAAACAA 562
||.|||.||.|||||.|||.|.||.||.||.||.||.|||||||||||.|
BPUM_0244___g 510 GGCAACTGCGCACCGTAACCGTGCTCTTGCTTATTACTTAAAAGAAACCA 559
BSNT_00431___ 563 ACTTTTTAGAAGCTGAAGTAGAAGAAACACTTGAGGTGTACTTGAAGCAA 612
|.|.|||||||.|.||.||.|||||.|||.|.||.||||||.|.||||||
BPUM_0244___g 560 ATTATTTAGAATCAGATGTCGAAGAGACATTAGAAGTGTACCTAAAGCAA 609
BSNT_00431___ 613 TGCGCTATGGAGAGCACCACAGAAGATATTGCGTTGATCGGCCTGATCCT 662
||..|.||.|||..|||.|||||.||.||.||.|||||.||.||.||..|
BPUM_0244___g 610 TGTTCCATCGAGGTCACAACAGAGGACATCGCCTTGATTGGACTCATTAT 659
BSNT_00431___ 663 TGCTCA--TGACGGGTATCATCCGATTCGACGCGAGCAGGTGATTCCAAA 710
| ||| |||.||.||.|||||..||..||..|..||.||.||.|||||
BPUM_0244___g 660 T--TCAAGTGATGGCTACCATCCCTTTAAACAAGTCCAAGTCATCCCAAA 707
BSNT_00431___ 711 AGATGTGGCAAAATTGGCCAAGGCGTTAATGCTGACGTGCGGCATGTACA 760
||||.|.||||.|.|..|.|||||.||.||||||||.|||||||||||.|
BPUM_0244___g 708 AGATATCGCAAGACTAACAAAGGCATTGATGCTGACATGCGGCATGTATA 757
BSNT_00431___ 761 ACGCTTCAGGCAAATATGCGGCGTTTGTCGGCGTGCCGGCCAAAAGCGGC 810
|.||.||.||.||.|.|||.||.||.||.|||||.||.||||||||.|||
BPUM_0244___g 758 ATGCATCTGGTAATTTTGCTGCTTTCGTAGGCGTACCAGCCAAAAGTGGC 807
BSNT_00431___ 811 GTCTCCGGCGGCATCATGGC--GCTGGTGCCTCCAAGCGCCAGAAGAGAA 858
||.||.||.||.||.||||| || ||.||.||||||||.|||||||||
BPUM_0244___g 808 GTGTCTGGAGGAATTATGGCTTGC--GTTCCGCCAAGCGCAAGAAGAGAA 855
BSNT_00431___ 859 CAGCCTTTTCAATCCGGATGCGGCATCGGCATTTACGGGCCTGCCATTGA 908
...||.|||||..|.||.||.||.|||||.|||||.||.||.||||||||
BPUM_0244___g 856 TTCCCATTTCAGACAGGCTGTGGAATCGGTATTTATGGTCCCGCCATTGA 905
BSNT_00431___ 909 TGAATACGGTAACAGCCTCACTGGCGGTATGCTGCTGAAGCATATGGCGC 958
.||.|..|||||.||..|.||.||.|.||||.|||||||..|..|.||..
BPUM_0244___g 906 CGATTGTGGTAATAGTATTACCGGTGTTATGATGCTGAAAAAGCTCGCTA 955
BSNT_00431___ 959 AGGAGTGGGAGCTCAGCATTTTTTAA 984
|.||||||||.|||||.|||||||||
BPUM_0244___g 956 AAGAGTGGGATCTCAGTATTTTTTAA 981
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