Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00430 and BPUM_0243
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00430.1.24716.seq
# -bsequence dna-align/BPUM_0243___glnT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00430-BPUM_0243___glnT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00430-BPUM_0243___glnT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00430
# 2: BPUM_0243___glnT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1488
# Identity: 836/1488 (56.2%)
# Similarity: 836/1488 (56.2%)
# Gaps: 345/1488 (23.2%)
# Score: 2515.5
#
#
#=======================================
BSNT_00430 1 ATGCAGCAAATCCTGG------AACATATCGTGGGTATCGCAAATGATCT 44
|||.| ||| |||| |...||||||.|.|
BPUM_0243___g 1 ATGAA--------TGGTTTATTAACA----------ACAACAAATGGTTT 32
BSNT_00430 45 TTTGTGGTCAAA-------GT-----TATTAATTGTTTTGCTCCTTTCTC 82
|.|.||||||.| || ||||||||.||.|...||||
BPUM_0243___g 33 TCTATGGTCATATATTATTGTTGCACTATTAATTATTGTCGGCCTT---- 78
BSNT_00430 83 TGGGAATCTATTTTACGTTCAGG-CTTAAGTTT--TTACAGGTTCGCATG 129
|||||.||.|||||| || .|||| || ||.||.||.|||
BPUM_0243___g 79 --------TATTTCACATTCAGGTCT--CGTTTCCTT-CAAGTGCGTATG 117
BSNT_00430 130 CTGAAAGAAATGGTCAGGGTATTAAGAGAAGGTGCTGCTTCCCGGTCGAA 179
||.||.||||||||.|..||..|.|.||||||..| ||
BPUM_0243___g 118 CTTAAGGAAATGGTGATTGTTCTGAAAGAAGGAAC-------------AA 154
BSNT_00430 180 AAACAC----------CATTTCTCCGTTTCAAGCCTTTTGC-ATCAGCAT 218
|.|.|| |.|.||.|||||.|||||| ||||| ||.||.||
BPUM_0243___g 155 ATAAACAAAAATCTGGCGTATCACCGTTCCAAGCC-TTTGCTATTAGTAT 203
BSNT_00430 219 GGCGGCCCGTGTCGGAACGGGAAATATTACGGGCATTGCCATCGCCATTG 268
||||||.||.||.|||||.||.||.|||||.||.|||||.|||||.||||
BPUM_0243___g 204 GGCGGCTCGGGTTGGAACTGGGAACATTACTGGGATTGCGATCGCAATTG 253
BSNT_00430 269 CACTCGGCGGGCCCGGTGCAATCTTCTGGATGTGGATTATCGCCATTATC 318
|..|.||.||.||.||.||.||.||.|||||||||||..|.||||||||.
BPUM_0243___g 254 CCATGGGTGGTCCTGGCGCTATTTTTTGGATGTGGATCCTAGCCATTATT 303
BSNT_00430 319 GGATCAGCATCCAGCTTTGTGGAAAGCACACTGGCTCAGATTTATAAAGT 368
||.||.||.||.||||||||.|||||.||.||.||.||..|.||||||||
BPUM_0243___g 304 GGTTCTGCGTCAAGCTTTGTTGAAAGTACGCTTGCCCAAGTATATAAAGT 353
BSNT_00430 369 AAAAGATGTAAACGGCTTCCGCGGCGGGCCGGCGTATTACATGGAAAAAG 418
|||.||||.|...|||||.|||||.||.|||||.||.||.||.|||||||
BPUM_0243___g 354 AAAGGATGCATCTGGCTTTCGCGGTGGTCCGGCCTACTATATTGAAAAAG 403
BSNT_00430 419 GGCTGAACAAAAGGTGGATGGGCGCGCTGTTCGCTGTGTTAATCACCTTA 468
|..|.||.|||.|.||||||||.....||||.|||||.|||||||||.|.
BPUM_0243___g 404 GCTTAAAGAAACGCTGGATGGGGATTTTGTTTGCTGTATTAATCACCATT 453
BSNT_00430 469 TCGTTCGGTATCGTCTTCAACTCGGTTCAATCCAATACAGTCAGCCTTGC 518
||.||||||||.|||||.||..|.||.||.||.||.||..|.|.|.||||
BPUM_0243___g 454 TCTTTCGGTATTGTCTTTAATGCTGTACAGTCAAACACCATTACCATTGC 503
BSNT_00430 519 CTTTGAAAACGCGTTTGGCACAAACCGCCTGACATTGGGACTCATTTTAA 568
.||||||||..|.|||||||||||.||..||....|.||..||||| |
BPUM_0243___g 504 TTTTGAAAATTCATTTGGCACAAATCGTTTGCTCGTAGGCGTCATT---A 550
BSNT_00430 569 TTGC---TGTATTCGGCACGATTATTTTTGGCGGAGTC-AAGCGCATTGC 614
|.|| ||.|||..|.|..||.|||||.||.||.||| ||.|| |||||
BPUM_0243___g 551 TGGCAATTGGATTTAGTATCATCATTTTCGGTGGGGTCAAAACG-ATTGC 599
BSNT_00430 615 AAAGCTGGCTGAATCCATTGTCGTCGTATTGGCTGTC-CTGTATATCGGA 663
.|||.||||.||||.||||||.|||.|.||.|||||| || |||||.||.
BPUM_0243___g 600 CAAGATGGCAGAATACATTGTGGTCTTCTTAGCTGTCGCT-TATATTGGT 648
BSNT_00430 664 GTTGCGTTTTTCGTCATTTTCACCAACATTACGCAGCTGCCAGGTGTGCT 713
|||||..||||.||.||..|.||.||||||||..|.|||||.|||||..|
BPUM_0243___g 649 GTTGCTCTTTTTGTTATGATTACAAACATTACTGAACTGCCTGGTGTTAT 698
BSNT_00430 714 TGCGCTAATCG----TGAAAAATGCGTTTGGTTTTGATCAGGCCGCCGGC 759
|.||.|| |...|.|.||.||.|||.||||.|||...||.||.
BPUM_0243___g 699 ----CCAAACGATTATTTCACACGCATTCGGTATTGAGCAGTTTGCAGGT 744
BSNT_00430 760 GGGGCTTTGGGCG-CGGCACTCATGCAAGGCGTCAGACGGGGAATCTTTT 808
||..|..||||.| ||.|| |.|||.||||..|||.||||||..|.||.|
BPUM_0243___g 745 GGTACCATGGGTGCCGTCA-TTATGGAAGGGATCAAACGGGGTCTATTCT 793
BSNT_00430 809 CAAACGAAGCGGGAATGGGAAGCGCACCGAATGCCGCTGCCACCGCCACA 858
||||||||||.||.|||||.||||||||.||.||.|||||..|.|||...
BPUM_0243___g 794 CAAACGAAGCTGGGATGGGTAGCGCACCAAACGCTGCTGCAGCTGCCGTG 843
BSNT_00430 859 ACAAGCCATCCCGTCAAACAGGGGCTGATCCAAGCTTTTGGTGTACTGAC 908
||.|||||.||.||.||.||.||..||||||||||.||||||||..|.|.
BPUM_0243___g 844 ACGAGCCACCCTGTAAAGCAAGGATTGATCCAAGCATTTGGTGTCTTAAT 893
BSNT_00430 909 AGATACACTGGTCATTTGTACAAGCACCGCCTTTATCATCCTGTTTTCGG 958
.|||||||||.|.|||||||||||.||.|||||||||.|.||.||.||..
BPUM_0243___g 894 TGATACACTGATTATTTGTACAAGTACTGCCTTTATCGTTCTTTTCTCAA 943
BSNT_00430 959 ATGCCTATCATAC----------TCCGGGTCTGAGCGGAATCGCCTTGAC 998
.|||.|||.|.|| .|.||...||||| |.||
BPUM_0243___g 944 GTGCATATAAAACGACAAAATTAACAGGTATTGAGC----------TTAC 983
BSNT_00430 999 ACAAGCCTCCCTCAGCTCCCATGTCGGATCATGGGCATCAGGCTTTCTCG 1048
.|||||.||..|.||....||..||||..|.|||||.||.||..||||.|
BPUM_0243___g 984 TCAAGCATCTTTGAGTGAACACATCGGTCCTTGGGCTTCTGGTGTTCTTG 1033
BSNT_00430 1049 CGATTCTGATTTTGTTATTCGGATTCTGTGCTCTAATTGGAAACTATTAT 1098
|.|||.||.||||.|||||.|..||..||.|.||.||.||.||.|||||.
BPUM_0243___g 1034 CCATTATGGTTTTCTTATTTGCGTTTAGTACGCTGATCGGGAATTATTAC 1083
BSNT_00430 1099 TATGGCGAAACCAATATCGGCTTTTTGAACAAAAGCAAAAAACTGATT-T 1147
|||||.|||||.||.||.|..||..|.||...|||| |||..|||.|| .
BPUM_0243___g 1084 TATGGTGAAACGAACATTGAGTTCCTTAAATCAAGC-AAAGCCTGGTTGA 1132
BSNT_00430 1148 TTGTCTACCGTAT--CGG--------------------CGTGCTG--GCA 1173
|||..|||||||| ||| .|||||| |||
BPUM_0243___g 1133 TTGGATACCGTATTGCGGTCATTGCCATGGTTTTATTCGGTGCTGTAGCA 1182
BSNT_00430 1174 A-TGATC---GTGTTTGGCTGTGTTGCC-----------------AAAGT 1202
| ||.|| .||||||| ..|.||||| ||.|.
BPUM_0243___g 1183 AGTGTTCCTTTTGTTTGG-AATCTTGCCGATTTGTTTATGGGCTTAATGG 1231
BSNT_00430 1203 CCAGCTCGTCTAG------------------------------------- 1215
.|| |||| ||.
BPUM_0243___g 1232 TCA--TCGT-TAACCTCATTGCCATTACCATGCTGTCCAAAGTCGCCTTT 1278
BSNT_00430 1215 -------------------------------------------------- 1215
BPUM_0243___g 1279 GCAGCATTAAAGGATTATTCACGGCAGAAAAAAGAGGGGAAAGATCCAGT 1328
BSNT_00430 1215 -------------------------------------------------- 1215
BPUM_0243___g 1329 CTTTTATAAAAATGCCGTTCCAAACAATGAGAACATTGAATGCTGGGACG 1378
BSNT_00430 1215 -------------------------------------- 1215
BPUM_0243___g 1379 ATGAACCTGCTTCGTTGAAAAAGAATCATATTGGGTAA 1416
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