Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00730 and BPUM_0239
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:30
# Commandline: needle
# -asequence dna-align/BSNT_00730___ydaB.1.24716.seq
# -bsequence dna-align/BPUM_0239___ydaB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00730___ydaB-BPUM_0239___ydaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00730___ydaB-BPUM_0239___ydaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00730___ydaB
# 2: BPUM_0239___ydaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1675
# Identity: 998/1675 (59.6%)
# Similarity: 998/1675 (59.6%)
# Gaps: 329/1675 (19.6%)
# Score: 2455.5
#
#
#=======================================
BSNT_00730___ 1 ATGGAA-ACATTACA-GCATCTGATTCTGCATGACATGCCGAAT--AGCG 46
|.||| |||||||| |||| |.||..|.|||| |||| |.||
BPUM_0239___y 1 -TTGAATACATTACAGGCAT----TACTTAACGACA----GAATGGAACG 41
BSNT_00730___ 47 -----AAGAAATAGAGGCTGTAAAAAGCGGAGACCATACACTG------- 84
.|.||||.||.||.||||...||||.| .||
BPUM_0239___y 42 CTCTTCACAAATTGAAGCGGTAACTGGCGGGG--------GTGTGTCTTA 83
BSNT_00730___ 85 -ACATATAAAGGTTACCGTAAA-CGGATTAATCAGCTGGC-GAATGCCAT 131
||||.|.|||..|| .|.||| ||.|||.|.|||||.|| .|.|.|| |
BPUM_0239___y 84 TACATTTGAAGAATA-TGCAAAGCGCATTGACCAGCTTGCTCACTACC-T 131
BSNT_00730___ 132 GCTTCAAAAAGGAATTC-AAAAGGGCGACCGTG-TTGCATTGCTTTGCAA 179
.|.||||||.||.|||| |||||||| |||||| |||| ||..|||||.|
BPUM_0239___y 132 ACATCAAAAGGGGATTCGAAAAGGGC-ACCGTGTTTGC-TTTATTTGCCA 179
BSNT_00730___ 180 AAACGGCCATCCCGCA----TCAACTGTTATGTTCGCCGCGCTTGAAA-T 224
||| |||||.| || |||||..|||||.|.||.|| |.|.||| .
BPUM_0239___y 180 AAA---CCATCAC-CACTTTTCAACGATTATGCTGGCAGC-CATCAAAGC 224
BSNT_00730___ 225 AGGTGCTGTTGTCGTACCTGTCAGCTGGCAGCTGAAACCATATGAAATGA 274
||||||.||.|..||.||..|.|||||||||||.|...|.|.|||..||.
BPUM_0239___y 225 AGGTGCAGTCGCAGTTCCGCTTAGCTGGCAGCTTACTTCCTTTGAGCTGG 274
BSNT_00730___ 275 CAGGCATTTT---AAAAGCAAGTGAACCGAAAGC--GATGTTTTACGGAG 319
.|||.||||| ||||||| |||||.||.|| .||.|||| ||.
BPUM_0239___y 275 AAGGTATTTTGAAAAAAGCA---GAACCAAAGGCTTTATTTTTT---GAC 318
BSNT_00730___ 320 CG-GAGTTTAAAGAGATACTGGATGAAGT---TCTACCT---GA--ATTG 360
|| ||.||....||.||..|.|..|.||| |.||.|| || ||||
BPUM_0239___y 319 CGTGAATTCCGTGACATCATTGCGGCAGTGAATGTATCTTTAGAAGATTG 368
BSNT_00730___ 361 TCCTCACTGT--------GTGTAACAATG-GAAACAGGAACAGCTTACGA 401
|||.|..|| |||| ||||| |||| ||.|
BPUM_0239___y 369 -CCTGATGGTGGAATCCGGTGT--CAATGCGAAA------------ACAA 403
BSNT_00730___ 402 AACATCTGCTGAATTTGAAGCGCTGTTTGCAGGTC--CTGAT-------C 442
.|||.||| |||||.|...|.||.||| || .|||| .
BPUM_0239___y 404 CACAGCTG-----TTTGAGGACATTTTGGCA--TCAAATGATGGCAGTAA 446
BSNT_00730___ 443 ATTTGCCAGAGACGGAAATGGTTTCACCTGATGATACAGCACTTCTGATG 492
|.||||...||| |||.|||...||.|||..||| ||||
BPUM_0239___y 447 ACTTGCTGTAGA-------GGTATCAGAAGAGGATCTAGC------GATG 483
BSNT_00730___ 493 ------TTTACATCTGGAACAACGGGAAACCCGAAAAGATGCATGATTAC 536
||.||.|||||||||||.||.||.||.|||.||||.|||.|...
BPUM_0239___y 484 ATTTTATTCACCTCTGGAACAACAGGCAATCCAAAAGGATGTATGGTCGG 533
BSNT_00730___ 537 ACATGGCGGCATATA-CAGATACGTTAAAAAATCCAACAGCT--CAAT-- 581
||||||..|.||.|| || |..||.|| |||.|..| .|||
BPUM_0239___y 534 ACATGGGCGAATCTATCA---ATTTTTAA-----CAAGACGTGGGAATCG 575
BSNT_00730___ 582 AGCA--CG-TATGAAGGGCCTTCGTTTTCTCGCGTGCCATCCGATTTATC 628
||.| || |.||||.||....||.|.|.|.|||.|.||||||.|.||||
BPUM_0239___y 576 AGGATTCGATCTGAAAGGAAAACGATATTTGGCGAGTCATCCGTTGTATC 625
BSNT_00730___ 629 ATACGAGTGCGCTCATTTGCATCA--TGCTTGGA---ACGTTTGCAG--- 670
|||.|||| |||.|| .|||| ||.|||.| .||.|||.||
BPUM_0239___y 626 ATATGAGT----TCAATT-AATCACCTGATTGCAGCCGCGATTGAAGGGT 670
BSNT_00730___ 671 AAACAACCTT-TGTGTTTACAAAGGATCAAGATCCTGTTCACATGCTGAA 719
|.||| ||| |.|.|||| ||.|||.|| ||| |.|||
BPUM_0239___y 671 ATACA--CTTGTCTTTTTA--------CATGATGCT----ACA--CCGAA 704
BSNT_00730___ 720 GGTCATTGAAGAA------GAGAA------AATTCAGACCGTGATGGCTC 757
...||||..|||| ||||| ||||..|..|.||||||||
BPUM_0239___y 705 ACGCATTTTAGAAACGATTGAGAAAGAAAGAATTACGTTCATGATGGCT- 753
BSNT_00730___ 758 TTCC--TGTGTTTTACACGTATTTGCTTGAGGCGTGG----GAAACGC-- 799
|||| |..| .|||||||||..||||.|| .| |||||||
BPUM_0239___y 754 TTCCCATCAG-CTTACACGTACATGCTAGA-----AGAAATGAAACGCGG 797
BSNT_00730___ 800 -----ACCAAACTGACTTATCTTCACTTGTTATTTTAATGACAGGCGGAA 844
||.| |..||.||||| |||..|||..|||..|.|||||.|
BPUM_0239___y 798 TTCGTACGA---TCTCTCATCTT---TTGAAATTGCAATTTCTGGCGGTA 841
BSNT_00730___ 845 CAAAAGTGCCGAGCA-GCCTAATCCGCCGCTATCTTGATATT-------- 885
|.||.|||||| |.| ||.|||| |..|.|||
BPUM_0239___y 842 CGAAGGTGCCG-GTACGCTTAAT-----------TAAAGATTACAAAGAA 879
BSNT_00730___ 886 ---GGCATTCCGCTCGCGCATGGCTATGGAAGCACTGAGGCTTGGGGCAT 932
|||||||.|.|...|||||||||||||||.||.||.||.||||...|
BPUM_0239___y 880 GTAGGCATTCAGATGATGCATGGCTATGGAAGTACGGAAGCATGGGTTGT 929
BSNT_00730___ 933 CAGCACATGGACGCCTGATATGGGAATGGATAAAGCGGCATCTGCAGGAA 982
.||..|.|||...||.|..|||||...|||||||..||..|||||.||.|
BPUM_0239___y 930 GAGTGCGTGGCATCCAGCGATGGGCGAGGATAAAATGGGCTCTGCGGGTA 979
BSNT_00730___ 983 AACCTGTGG---CAGGTGTTAAAGTCAAAGTGGAAGATCCTCTGACCGGA 1029
|| |||| |||.|||..||||.|||.|.|...|.|||..||| |
BPUM_0239___y 980 AA---GTGGATCCAGATGTAGAAGTGAAAATCGTGCACCCTGAGAC---A 1023
BSNT_00730___ 1030 GA--AGAACTTCCTCA--AGGAGAAATCGGCGAAATCGTTGTTCAT---- 1071
|| |||..||.| || .||||||||.||.|||.||| ||||
BPUM_0239___y 1024 GACGAGACATTGC-CAGCTGGAGAAATTGGTGAAGTCG----TCATGAGA 1068
BSNT_00730___ 1072 ACTCCATTCTTATTT-AAAGGCTATGAAGACAATCCTGAAGCAACAGCGA 1120
|..||||| |||||| ..||||||..|..|..|.|||||.||.||||.||
BPUM_0239___y 1069 AGCCCATT-TTATTTCTTAGGCTACTATCATCAGCCTGACGCTACAGAGA 1117
BSNT_00730___ 1121 AAGTGCTGCAAA-ATGGATGGTTTAGAACC-----GGAGATTCAGGATAT 1164
|.||.|| |||| ||||.||||| || ||||||.||||||||
BPUM_0239___y 1118 AGGTACT-CAAAGATGGCTGGTT-----CCATATGGGAGATGCAGGATAT 1161
BSNT_00730___ 1165 GTAGATGAAGATGGCTTTATTTTCATCACGGGACGCTACAAGGATGTCAT 1214
.||||||||||.||.|||.||||||||||.||..|.|||||.|||||.||
BPUM_0239___y 1162 TTAGATGAAGACGGTTTTCTTTTCATCACAGGTAGATACAAAGATGTGAT 1211
BSNT_00730___ 1215 TATTTACGGAGGCGATAACGTCTATCCTGATCAGGTTGAAGAAGTTATCC 1264
|.|||||||.||.|||||..||||||||||.||.||.||||||||.||..
BPUM_0239___y 1212 TCTTTACGGCGGGGATAATATCTATCCTGACCAAGTAGAAGAAGTCATTG 1261
BSNT_00730___ 1265 AGCAGATCCCGGGAATCCTTGAAACGGCTG----TGGTCGGTATTCCAGA 1310
|.||.||.||.||..|..|||||.|.|||| ||| |||| ||.||
BPUM_0239___y 1262 ATCAAATTCCAGGTGTGATTGAATCAGCTGTTATTGG--GGTA--CCGGA 1307
BSNT_00730___ 1311 CCCGCTTTACGGTGAAAAACCGAAAGCTTTTATCGTGAAAA----ATGGC 1356
|....|.||.||||||...||.|..||.|.|||||| |||| ||..|
BPUM_0239___y 1308 CGAATTATATGGTGAAGTGCCAAGTGCGTATATCGT-AAAAGACGATTCC 1356
BSNT_00730___ 1357 GGCCA-----GCGCATCACGGAAGAGGATGTCATCGCA-TTTTGTAAAGA 1400
|.|.| || |||||.|||||..| |.| |.|||..|.||
BPUM_0239___y 1357 GTCGATTTTTGC--------GAAGAAGATGTGGT-GAACTATTGCCAGGA 1397
BSNT_00730___ 1401 ACGCCTGTCCGCTTACAAAATACCTGAAGTTGAATT--TGTTAAC----G 1444
|||..||.|.|.|||||||.|.|| .|..||| | ||.|| |
BPUM_0239___y 1398 ACGTTTGGCAGATTACAAAGTGCC-----CTCCATTCAT-TTCACACAGG 1441
BSNT_00730___ 1445 AACTGCCGAAAAACAACCTTGGCAA---GGTGAAAAAAG----ACGTCCT 1487
|.|||||.||||||||.|||||.|| ..||||.|||| ||||
BPUM_0239___y 1442 AGCTGCCAAAAAACAAGCTTGGTAAAATCATGAAGAAAGATTTACGT--- 1488
BSNT_00730___ 1488 GCGCAATCAGGCTGTACATTCATAA 1512
.||| .||.|||..||.|.||.
BPUM_0239___y 1489 ---GAAT-TGGTTGTGAATGCGTAG 1509
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