Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06131 and BPUM_0236
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_06131___yxaG.1.24716.seq
# -bsequence dna-align/BPUM_0236___yxaG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06131___yxaG-BPUM_0236___yxaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06131___yxaG-BPUM_0236___yxaG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06131___yxaG
# 2: BPUM_0236___yxaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1233
# Identity: 606/1233 (49.1%)
# Similarity: 606/1233 (49.1%)
# Gaps: 408/1233 (33.1%)
# Score: 1157.5
#
#
#=======================================
BSNT_06131___ 1 ATGAAAACATTATGT--------ACACATTC-ATTGCCTAAAGAAA---- 37
|||| .|.||.|| | |.|||.||
BPUM_0236___y 1 -----------ATGTCGGAGCAACCGCAATCGA-----TCAAGCAATCCG 34
BSNT_06131___ 38 AA-------------ATGCCTTATTTGCTCCGGAGCGGAGAAGGCGAGCG 74
|| ||.||.|.|.||.|.|.| |||
BPUM_0236___y 35 AAGGTACCTCTTTTTATACCGTGTCTGGTTCAG---GGA----------- 70
BSNT_06131___ 75 CTATCTGT-TCGGC-----AGACAGGTTGCCACGGTGATG-GCGAATGGG 117
|.|||| |.||| |..|||.|| |.|.||| || |||.
BPUM_0236___y 71 --AACTGTATGGGCTGGAAAATCAGCTT-----GTTCATGTGC---TGGC 110
BSNT_06131___ 118 AGGAGCA---CAGGTGATT----TGTTTGAGATCGTGCTT-CTTTCCGGG 159
||.|||| ||...||.| ||||||||.|.|| ||| .|..|.||.
BPUM_0236___y 111 AGAAGCAAATCAAACGAATCAGCTGTTTGAGCTTGT-CTTAATCACAGGT 159
BSNT_06131___ 160 GGAAAAGGAGATGCCTTTCCGCTTCAC-GTCCACAAGGACACACATGAAG 208
||.|||||||.|...|||||.|||||| || ||..||.||..|..||||.
BPUM_0236___y 160 GGGAAAGGAGCTTATTTTCCACTTCACTGT-CATGAGCACTTATTTGAAA 208
BSNT_06131___ 209 GAATTCTCGTTTTGGACGGGAAACTGGAACTGACACTT-GACGGTGAACG 257
..||..|.||..||||.||.||.||.||..||| .||| ||||||.||
BPUM_0236___y 209 CCATATTTGTGCTGGAAGGAAAGCTTGAGGTGA-TCTTGGACGGTAAA-- 255
BSNT_06131___ 258 CTATTTATTAATATCAGGT----------GATTATGCCAACATTCCGGCG 297
.|||||..||| ||||||....|.||.|||.|.
BPUM_0236___y 256 --------AAATATATGGTCACAGCCTTCGATTATATTCATATCCCGCCC 297
BSNT_06131___ 298 GGAACACCGCACAGCTACCGGATGCAGAGCCACAGAACAAGACTGGTGTC 347
..||||...||..|||||.|.|||||.||.||||.||||.||.|..|.||
BPUM_0236___y 298 AAAACAATCCATGGCTACAGAATGCATAGTCACAAAACACGATTTATTTC 347
BSNT_06131___ 348 CTACACGATGAAAGGAAACGTAGCG-CACTTGTAT-TCCG-TTATTGGGA 394
.||.|||.||...||||| |..| ||..|||.| ||.| ..|||||||
BPUM_0236___y 348 ATATACGTTGGGCGGAAA---AATGACAGATGTCTATCAGCAAATTGGGA 394
BSNT_06131___ 395 ATCCGTATGATCACGCTGAACATCCGCCGTACGCAAG--CGAAGAAGTCT 442
| .|.|||.|| ||.|.|||.|.| ||
BPUM_0236___y 395 A----------AAAGCTTAA-----GCGGAACGAATGGCCG--------- 420
BSNT_06131___ 443 CAAACGAGCGAT-TTGC---AGAAGCAGCCGCTGTAGCGGACATTGTATT 488
|.||.|||| |||| .||.||||| |||| ||
BPUM_0236___y 421 ---ATGACCGATCTTGCTTTCGATGCAGC-----TAGC----------TT 452
BSNT_06131___ 489 T---CTAGATG--AAGGAAAGC------------CTGCATG---TTCGGC 518
| |.||.|| ||.|||||| .|||||| |.||||
BPUM_0236___y 453 TGAACAAGCTGAAAAAGAAAGCGATCTCATATTGATGCATGGTATCCGGC 502
BSNT_06131___ 519 ---------------CAAA----------TTAGCGGAACTTACAGAG-CT 542
|||| ||| ||.||.|| ||
BPUM_0236___y 503 AGCTGTCCAATACAACAAAGCCCTCCGTTTTA-------TTTCATAGTCT 545
BSNT_06131___ 543 GC-----CAGATGGAGCGGTTCCATACGTTCTTGAATCTGGAGAAGG--- 584
|| |||..||.||.| ||.|||||..|.||..||||.|||||
BPUM_0236___y 546 GCTCCCTCAGGCGGTGCAG--CCTTACGTATTAGAGGCTGGTGAAGGGAA 593
BSNT_06131___ 585 -----AGATCGCCTGTTGACTGGAGATCAGC--------TTCACCGCATT 621
|.|| |||.|| ||| ||||| ||.|.||||
BPUM_0236___y 594 GCAATATAT----TGTGGA-TGG---TCAGCTACATGAGTTGATCGCA-- 633
BSNT_06131___ 622 GTGGCTGCACAAAAAAATACA----GATGGCCAGTTTA-TCGTCGTATCC 666
||||.|.|| ||| || |||..|||.| ||.|..|.|..
BPUM_0236___y 634 --------ACAACAGAA-ACAACTGGA-GGCGGGTTCACTCATTTTGTAA 673
BSNT_06131___ 667 TCTGAAGGCCCTAAAGGTGA----------CCGAATCGTTGATCACTACC 706
|| ||||||.|.|||||..| ||| ||.||.|
BPUM_0236___y 674 TC-GAAGGCGCGAAAGGAAAATATTTTCCCCCG----------CATTATC 712
BSNT_06131___ 707 ATGAACATCATACAGAAACATTTTATTGCCTTGAAGGTCAGATGACGATG 756
||.||...|||||||||.||.|.||||||.||||.||..|.|||| ||.
BPUM_0236___y 713 ATCAAGTACATACAGAAGCACTCTATTGCGTTGAGGGAAAAATGA--ATC 760
BSNT_06131___ 757 TGGGCAG----ATGGCCAGGAAATTCAGCTGAATCCGGGAGATTTCCTGC 802
| .||| |.||..||||.||....||||..||.||.||.|| |||
BPUM_0236___y 761 T--TCAGTTGAACGGAGAGGATATATGCCTGATGCCAGGTGACTT--TGC 806
BSNT_06131___ 803 --ATGTCCCTGCAAATACCGTTCACTCCTATCGCCTTGATTCTCA--CTA 848
||.|.||..|..||||.||||||||.|||....|||..||||| |||
BPUM_0236___y 807 CTATATACCGCCGTATACGGTTCACTCTTATGAATTTGTGTCTCATTCTA 856
BSNT_06131___ 849 ---------TAC----------------AAAGATGGTGGGC-GTATTGGT 872
||| |||||| ||.|| |
BPUM_0236___y 857 ATAAATTTTTACTTTTGCTGCTCCCGGGAAAGAT--TGAGCAG------- 897
BSNT_06131___ 873 TCCTGGTTTATTTGAACCGTTTTTCCGGACGTTAGGCG----ACCC--GT 916
||.|.|||.|.|||| ||.| |.||| .||| ||
BPUM_0236___y 898 -------TTGTATGAGCAGTTT-----GAAG--AAGCGCAAAGCCCGAGT 933
BSNT_06131___ 917 ATGAAGGCCACATCTTCCCATGTGAGCCTC----AGGCTTTGCACTT--T 960
|| |.|.||..||.|| || || ||| |.|||| |
BPUM_0236___y 934 AT-ATGTCCTTATTTT---AT-------TCAAGAAGG----GAACTTGAT 968
BSNT_06131___ 961 GATCG--CG------TTTTGCAGAATATCGAAGCATTAGATTTAAAGGTA 1002
||||| || ||.|.|..||||| |||||
BPUM_0236___y 969 GATCGATCGAGAGACTTCTTCTCAATAT----------GATTT------- 1001
BSNT_06131___ 1003 GATTATCGGGCTGATATTGTATCGGCTCGATGA 1035
||.|| .|||||.|...| |||.|
BPUM_0236___y 1002 -------GGTCT-TTATTGAAAAAG---GATAA 1023
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