Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00426 and BPUM_0223
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00426___ybgF.1.24716.seq
# -bsequence dna-align/BPUM_0223___ybgF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00426___ybgF-BPUM_0223___ybgF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00426___ybgF-BPUM_0223___ybgF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00426___ybgF
# 2: BPUM_0223___ybgF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1446
# Identity: 993/1446 (68.7%)
# Similarity: 993/1446 (68.7%)
# Gaps: 141/1446 ( 9.8%)
# Score: 3476.0
#
#
#=======================================
BSNT_00426___ 0 -------------------------------------------------- 0
BPUM_0223___y 1 ATGGAACAAGCAAAAGATCAGTCACAACAATATCAACGAAAAATGACGAG 50
BSNT_00426___ 1 -------------ATGCTTTCCTTGGGAGGTGTCATCGGAACCGGGCTGT 37
||||||||..|.||.||.||.||.||.||.|||||.|
BPUM_0223___y 51 CCGCCACCTGTTCATGCTTTCTCTAGGCGGCGTGATTGGCACAGGGCTCT 100
BSNT_00426___ 38 TTTTAAGCTCAGGTTATACCATTCAGCAAGCAGGCCCGGCCGGAACGATA 87
||||||||||.||.||||||||..|.||||||||.||.||.|||||.||.
BPUM_0223___y 101 TTTTAAGCTCTGGGTATACCATCAATCAAGCAGGACCCGCAGGAACAATC 150
BSNT_00426___ 88 CTCGCCTA-CTTAGTCGGTGCCGGC----ATCGTCTATCTGGTCATGCTC 132
||.||||| ||| ||||| ||| ||.||.||.||.||.|||||.
BPUM_0223___y 151 CTTGCCTATCTT-GTCGG----GGCATTAATTGTGTACCTCGTGATGCTT 195
BSNT_00426___ 133 TGCCTCGGTGAGCTGTCAGTCGCCATGCCTGTGACCGGCGCCTTTCACAC 182
||..|.||.||.|||||.||.||||||||.||.||.||.||.|||||.||
BPUM_0223___y 196 TGTTTAGGCGAACTGTCTGTTGCCATGCCGGTTACAGGGGCATTTCATAC 245
BSNT_00426___ 183 CTATGCAGCCAAATACATAGGGCCGGGCACCGGATTTACGGTCGCTTGGC 232
.||||||.|.||.|||||.||.||.|||||.||.|..||.||.|||||||
BPUM_0223___y 246 GTATGCAACAAAGTACATTGGACCCGGCACAGGCTACACAGTTGCTTGGC 295
BSNT_00426___ 233 TGTACTGGCTGACATGGACCGTGGCATTGGGATCAGAATTCACAGCAGCC 282
|||||||||||||||||||.||.|||.|.||.||.|||||.|||||.||.
BPUM_0223___y 296 TGTACTGGCTGACATGGACAGTCGCACTCGGGTCGGAATTTACAGCGGCA 345
BSNT_00426___ 283 GGCCTGTTAATGCAGCGCTGGTTCCCCCATACATCGGTTTGGATGTGGAG 332
||.||.||||||||||||||||||||..|.||||||||||||||||||||
BPUM_0223___y 346 GGGCTTTTAATGCAGCGCTGGTTCCCAGACACATCGGTTTGGATGTGGAG 395
BSNT_00426___ 333 TGCCGTCTTTGCGCTGTTC--ATTTTCTTGCTTAACGCATTTTCGGTCAA 380
.|.|||||| ||||.||| ||.||.||.||.||.||.|||.|.||.||
BPUM_0223___y 396 CGGCGTCTT--CGCTCTTCTTATCTTTTTACTCAATGCGTTTACAGTTAA 443
BSNT_00426___ 381 GTTTTTCGCTGAATCAGAATTTTGGTTTTCCAGCATCAAAGTATTAGCCA 430
||||||.||.||||||||.|||||||||||||||||.||||||.|.||.|
BPUM_0223___y 444 GTTTTTTGCAGAATCAGAGTTTTGGTTTTCCAGCATTAAAGTAATGGCTA 493
BSNT_00426___ 431 TTGTATTATTTATTCTTTTAGGCGGCTCTGCCATGTTTGGCATCATTCCG 480
||.|..|.||||||.||.|.|||||..||||.|||||||||.|.|||||.
BPUM_0223___y 494 TTATTCTCTTTATTATTCTTGGCGGAGCTGCGATGTTTGGCTTGATTCCA 543
BSNT_00426___ 481 ATCAAAGGCGGAGAAGCCGCTCCGATGCTGTCCAACTTCA-TGGCGGAAG 529
.|.||||||||.||||||||||||.|..|.||.||||||| ||| |||||
BPUM_0223___y 544 TTAAAAGGCGGTGAAGCCGCTCCGTTCTTTTCTAACTTCACTGG-GGAAG 592
BSNT_00426___ 530 GCGGGCTTTTTCCAAATGGATTTGTCCCGATTTTGATGACGATGCTGTCC 579
||||.|||||.|||||.||.|||.|.||.|||||.|||||||||||..||
BPUM_0223___y 593 GCGGTCTTTTCCCAAACGGCTTTTTACCAATTTTAATGACGATGCTTGCC 642
BSNT_00426___ 580 GTTAATTTTGCCTTTTCGGGAACGGAACTAATCGGAATCGCAGCCGGTGA 629
||.|||||.||.|||||.||.|||||..||||.||.||.||.||.|||||
BPUM_0223___y 643 GTCAATTTCGCTTTTTCAGGTACGGAGTTAATTGGGATTGCTGCGGGTGA 692
BSNT_00426___ 630 AAGCGTTGATCCTGACAAGACAATACCAAAAGCGATTAAAACAACGGT-C 678
||||||..||||||||.||||.||.||||.||||||....|||||.|| |
BPUM_0223___y 693 AAGCGTCAATCCTGACGAGACCATTCCAAGAGCGATCCGCACAACCGTAC 742
BSNT_00426___ 679 TGGCGTCTCTCACTCTTCTTTGTCGGAACAATTTTTGTGCTGTCAG--GG 726
| ||||||.....|.||.||.||.||||||| |.|||.|.|.|| ||
BPUM_0223___y 743 T-GCGTCTTGTTTTGTTTTTCGTTGGAACAA---TCGTGGTCTTAGCTGG 788
BSNT_00426___ 727 C-TGATTCCGATTCAAGATGCAGGTGTCATCAAAAGCCCGTTTGTCGCTG 775
| ||||.||..|..||||.||.||.||.||||||||.||.|||||.|..|
BPUM_0223___y 789 CTTGATCCCAGTAGAAGAAGCTGGGGTGATCAAAAGTCCATTTGTTGTGG 838
BSNT_00426___ 776 TCTTTGACAGAGTCGGTGTACCATACGCAGCCGATATCATGAACTTTGTT 825
|.|||||..|..|.||..|.|||||.||.||.|||.|||||||.|||||.
BPUM_0223___y 839 TGTTTGATCGCATTGGGATTCCATATGCCGCAGATTTCATGAATTTTGTC 888
BSNT_00426___ 826 ATCCTGACAGCGATCCTGTCAGCGGCTAATTCCGGACTCTACGCTTCTTC 875
||..|||||||||||.|.||.||.||.||.||.|||||.||.||.|||||
BPUM_0223___y 889 ATTTTGACAGCGATCTTATCTGCCGCAAACTCTGGACTATATGCGTCTTC 938
BSNT_00426___ 876 CCGGATGCTGTGGTCTTTATCAAAAGAAAAAACGCTTCATCCGACATTTG 925
|||.|||||.|||||..|.||..|.|||...||.||.|.|...|.|||.|
BPUM_0223___y 939 CCGTATGCTTTGGTCACTTTCTGAGGAACGGACACTGCCTAAAAAATTGG 988
BSNT_00426___ 926 CAAAGCTGACGTCAAAAGGAACCCCTTTTAACGCGCTGGTGTTCAGCATG 975
|.||||||||.||||||||||..|||||.||.||.|||.|.||.||.|||
BPUM_0223___y 989 CGAAGCTGACATCAAAAGGAATTCCTTTGAATGCACTGATTTTAAGTATG 1038
BSNT_00426___ 976 ATCGGCGGCATTCTGTCGTTGCTGTCCAGCGTATTTGCGCCAGACACTGT 1025
||||||||.|||||.||.|||.|.||.||.||..|.||.|||||.||.||
BPUM_0223___y 1039 ATCGGCGGGATTCTTTCTTTGTTATCAAGTGTCATCGCACCAGAAACGGT 1088
BSNT_00426___ 1026 ATACGTTGTGCTCGTGTCGATTTCCGGTTTTGCCGTCGTTGTCGTGTGGA 1075
.|||.||||.||.||.|||||.||.||..|||||||.||..|||||||||
BPUM_0223___y 1089 CTACCTTGTCCTTGTTTCGATCTCAGGACTTGCCGTTGTGATCGTGTGGA 1138
BSNT_00426___ 1076 TGGGAATCGCTGCTTCTCAATTCATGTTCAGAAAACGTTATAT---CGAA 1122
||||.||.|||||.||.|||||.|||||..|.|||||||.|.| .|||
BPUM_0223___y 1139 TGGGGATTGCTGCCTCACAATTTATGTTTCGGAAACGTTTTTTACAGGAA 1188
BSNT_00426___ 1123 GCGGGAAACAAGGTTACTGATTTGAAATAC----AGAACCCCTTTGTATC 1168
|..||| |||.||..||||.| |.| .|||||||..|.||||
BPUM_0223___y 1189 GGCGGA---AAGCTTCATGATCT----TTCCTTTCGAACCCCGCTCTATC 1231
BSNT_00426___ 1169 CGTTCGTGCCGATTGCTGCGTTCCTGTTATGCCTGGCTTCCGTTGTTGGC 1218
|..|.||.||||||||.||.|||.|..|.||.||.||.||.||..|.|||
BPUM_0223___y 1232 CAGTGGTTCCGATTGCAGCCTTCTTCCTGTGTCTTGCCTCTGTGATCGGC 1281
BSNT_00426___ 1219 ATTGCCTTTGATCCGAATCAAAGAATCGCACTCTAT-TGCGGCGTTCCAT 1267
||||||||||||||.|||||..|.||.||.|| ||| ||||||.|.||.|
BPUM_0223___y 1282 ATTGCCTTTGATCCAAATCAGCGGATTGCCCT-TATCTGCGGCATCCCTT 1330
BSNT_00426___ 1268 TTATGGCCATTTGCTATGCAATATATTATGT----------------AAA 1301
|.||.||.||.||||||||....|||||||| |||
BPUM_0223___y 1331 TCATCGCGATCTGCTATGCTGCCTATTATGTGACAGCTTGGATTCAGAAA 1380
BSNT_00426___ 1302 AAACCGCAAAAGCCAGCCGGCTGCTGATATGACTTATTCAAAATAA 1347
||||...||.|.| |||.|| |||.|
BPUM_0223___y 1381 AAACGTGAAGAAC-------CTGGTG-TATAA-------------- 1404
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