Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00608 and BPUM_0210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:24
# Commandline: needle
# -asequence dna-align/BSNT_00608___yckE.1.24716.seq
# -bsequence dna-align/BPUM_0210.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00608___yckE-BPUM_0210.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00608___yckE-BPUM_0210.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00608___yckE
# 2: BPUM_0210
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1663
# Identity: 898/1663 (54.0%)
# Similarity: 898/1663 (54.0%)
# Gaps: 470/1663 (28.3%)
# Score: 2153.5
#
#
#=======================================
BSNT_00608___ 1 ATGA-----TC--CACCAGCATCCAAAATCTTTTCCGAAACATTTTTTGT 43
|||| || |||.|||| ||| |||||.||..|.|||||.|
BPUM_0210 1 ATGAGATATTCAACACTAGCA-CCA------TTTCCAAAGGACTTTTTCT 43
BSNT_00608___ 44 GGGGC---TCTGCTTCTGCAGCGTACCAGATTGAAGGCGCTTGGAATGAA 90
||||| |||.||| |.||.||.||..|.|||||.||.|||||.||.
BPUM_0210 44 GGGGCGGATCTACTT---CCGCCTATCAAGTAGAAGGTGCATGGAACGAG 90
BSNT_00608___ 91 GATGGCAAAGGCCCTTCTGT--TTGGGATGTGTTTACGAAAATACCGGGC 138
|||||||||||.||.||||| |||..||| .|.||
BPUM_0210 91 GATGGCAAAGGGCCATCTGTCATTGATATG---------------AGAGC 125
BSNT_00608___ 139 AAAACGTT----TAAAGGAACCAATGGCGAGATTGCGGTT---------- 174
|| ||| |.|||||||.| .||||| ||
BPUM_0210 126 AA---GTTATCCTGAAGGAACAA-----CAGATT----TTAAAGTCGCAA 163
BSNT_00608___ 175 --GACCATTATCACCGATTTAAAGAAGATGTCGCTCTGATGGCTGAGATG 222
||.||.||||||||.|.||||||.|||||.....||.|.||.||.|||
BPUM_0210 164 GCGATCACTATCACCGCTATAAAGAGGATGTGAAGATGTTTGCAGAAATG 213
BSNT_00608___ 223 GGGTTAAAAGCATATCGATTTTCCGT--CAGCTGGCCACGGGTTTTTCCA 270
||.||.||.||.|||||.||.||..| || |||.|||||.|..|||||
BPUM_0210 214 GGTTTGAAGGCTTATCGTTTCTCTATTGCA--TGGACACGGATCATTCCA 261
BSNT_00608___ 271 AAAGGAAAAGGAGAGATCAATGAAGCAGGTCTAGCGTTTTACGATAGTCT 320
||.|||.|.||.|||||||||.||...||..|.|..||.|||.||..|||
BPUM_0210 262 AATGGAGATGGGGAGATCAATCAAAAGGGGATTGAATTCTACCATTCTCT 311
BSNT_00608___ 321 GATTGATGAATTGC----TTTCTCATCACATCGAGCCGGTTCTGACTTTA 366
.||.|||||.|||| || ||.|.||.||.||..|..||||..|.
BPUM_0210 312 CATCGATGAGTTGCGCCGTT----ATGATATTGAACCAATCGTGACAATG 357
BSNT_00608___ 367 TATCACTGGGATTTGCCTCAAGCGCTTATGGACGAATACGGCGGGTTTG- 415
|||||.|..|||.|||||||.||.||| .|.|.|.|.||||| |||
BPUM_0210 358 TATCATTTTGATCTGCCTCATGCACTT---CAAGTAAAAGGCGG--TTGG 402
BSNT_00608___ 416 ---AATCCAGAAACA-TCATAGAGGATTTTAATCACTACTGTATTACTCT 461
||||..|..||| || ||.|..|||.| ||.|||
BPUM_0210 403 TCAAATCGTGCGACAGTC---GATGCGTTTGA-----ACGGTA------- 437
BSNT_00608___ 462 TTATAAACGTTTT------GGAG-------ACAGGGTGAAATATTGGGTT 498
|..|||.|||.| |||| |.|.|||||||||||||.|.
BPUM_0210 438 -TGCAAAGGTTCTATTTCAGGAGTATGGTCAGAAGGTGAAATATTGGCTG 486
BSNT_00608___ 499 ACGTTAAATGAACAGAACTACAATTTTAATCACGGATTTATTACAGCCAT 548
||..|.||||||||.||| ||..|.||| ||| |||
BPUM_0210 487 ACCATTAATGAACAAAAC----ATGATGATC---------TTA----CAT 519
BSNT_00608___ 549 GCATCCGC----------CTGGAGTGAAAGACAGAAAACGATTTTACGA- 587
|.|||.|| ||.||...|||...|||||| |.|||
BPUM_0210 520 GGATCAGCGCTCGGTACACTTGATCCAAATTTAGAAAA------TCCGAA 563
BSNT_00608___ 588 --------------AGCA-AACCAT-AT-TGCGTTTC-TGGCTAATGCAA 619
|||| |||||| || ||| || |.|||.|.||.|
BPUM_0210 564 AAAAGAACTGTATCAGCAGAACCATCATATGC---TCGTCGCTCAAGCGA 610
BSNT_00608___ 620 AAGCCATCGAATCATTTAGAGAATATG-TGCCTGAAGGCAAAATAGGTCC 668
||||||| ||..|.||...|..|.||| |||||||||..|||||.||.||
BPUM_0210 611 AAGCCAT-GACGCTTTGTCATCAAATGCTGCCTGAAGCGAAAATTGGACC 659
BSNT_00608___ 669 TAG-------CTTTG----CATATTCTCCGGCTTACCCTTTATTAAGCCA 707
|| |.||| ||| ||.||||||||..|| || |
BPUM_0210 660 -AGCGCCAAACATTGCGCTCAT-TTATCCGGCTTCTCC------AA---A 698
BSNT_00608___ 708 TCCAGAGGATATACTGGCATTTGAAAACGCCGAAGAATTTATGAACAAT- 756
.||.||||||.||||.|| || ||..||||| |||||
BPUM_0210 699 GCCTGAGGATGTACTTGC---TG-------CGGCGAATT-----ACAATG 733
BSNT_00608___ 757 -----------TG---GTGGCTTGACATGTATTGCTGGGGAACCTAC--C 790
|| ||..||||| |||.|||| .|||| |
BPUM_0210 734 CGATCCGCAACTGGCTGTATCTTGA----TATGGCTG-----TCTACGGC 774
BSNT_00608___ 791 CGCAAATTCCA-------TTCCGC-TACTTG---GAAAAACAGGGATGGG 829
||| .||..|| ||..|| |||.|| ||||||
BPUM_0210 775 CGC-TATAACAACCTTGCTTGGGCATACATGAAAGAAAAA---------- 813
BSNT_00608___ 830 CGCCGACA-----------ATCGAAGCAGGAGATATCGAGCTGCTTGCCA 868
|||| ||.||||..||||||||.||..| .||| |
BPUM_0210 814 ----GACATTCTTCCTGTCATTGAAGAGGGAGATATGGATAT-TTTG--A 856
BSNT_00608___ 869 AA---GGGAAGCCTGATTTTGTAGGTGTCAATTATTA------TCAGACG 909
|| |.||||||.||.||..|.|...|.||.||.|| |||.|||
BPUM_0210 857 AAAGTGCGAAGCCAGACTTCATTGCCTTTAACTACTACACATCTCAAACG 906
BSNT_00608___ 910 AT---------------------CACCTATGAA------------CGAAA 926
.| ||.|.||||| .||.|
BPUM_0210 907 GTTGAAGCGAGTAAAGGAGATGGCAACGATGAATTTGCTCGCGGCGGAGA 956
BSNT_00608___ 927 TCCGC--TTGA----TGGTGTGTCAGAAGG-GAAAATGAATACGACAGGC 969
||.|| |||| ||||| .|||.|| |.|.|| |.||||
BPUM_0210 957 TCAGCATTTGAAATCTGGTG---AAGATGGCGTATAT-------AAAGGC 996
BSNT_00608___ 970 CAAAAGGGAACCAATCAGGAGACGGGGATACCCGGAGTGTTCAAAACGAA 1019
||.|.|||.|.|.| ||..|||
BPUM_0210 997 ------GGCAACAACCCGTA-----------CCTAAGT------------ 1017
BSNT_00608___ 1020 AAAAAATCCGCATCTGACAACAAGCAACTGGGATTGGACAATTGACGCAA 1069
|||||| ||.|.|| .|||||| .||||||.|
BPUM_0210 1018 -AAAAAT--GCGTTTG----------GCTGGGA------GATTGACCC-- 1046
BSNT_00608___ 1070 TTG--GGCTGCGTATCGGTCTTCG------CCGAATTACAAGCCGCTATC 1111
|| ||||.| ||.||..|| ..||.|||..| |||.||||
BPUM_0210 1047 -TGTCGGCTTC----CGATCAACGATGCGAGAGATTTATGA-CCGTTATC 1090
BSNT_00608___ 1112 AGCTTCCAGTGTTTATAACAGAGAACGGTTTGGGTGAATTTGATAAAGTT 1161
||.|.||..|..||||.||.||.|||||.|||||||..||.||.||| ||
BPUM_0210 1091 AGTTACCTCTTATTATCACGGAAAACGGATTGGGTGCTTTCGACAAA-TT 1139
BSNT_00608___ 1162 ----GAGGACGGCACTGTACAGGATGATTATCGAATTGATTATTTACGTT 1207
||.||.||..|..|.||.|||||.||||||||||||||||||
BPUM_0210 1140 AGAAGAAGATGGATCGATTCAAGATGACTATCGAATTGATTATTTA---- 1185
BSNT_00608___ 1208 CG-----CATCTTGAGCAATGCAGACAAGCCATCAGTGACGGTGTTGATT 1252
| |||.|.||.|||..||.|...||.||||..|||||.|||||..
BPUM_0210 1186 -GAAAAACATATCGAACAAATCAAATGGGCGATCACAGACGGCGTTGAGG 1234
BSNT_00608___ 1253 TAATCGGCTATTGCAGCTGGTCGTTTACT-GATCTGTTAAGCTGGCTGA- 1300
|..||||.||.|||...||||| |..|.| |||||..|.||| |
BPUM_0210 1235 TCTTCGGATACTGCCCGTGGTC-TGCAATCGATCTAATCAGC------AC 1277
BSNT_00608___ 1301 ACGGCTACCAA---------AAAAGATACGGATTTGTATATGTCAATCGT 1341
|| ||||| ||..|.||||||||..|.||.|||||.|||
BPUM_0210 1278 AC----ACCAAGGATGCTCCAAGCGCTACGGATTCATCTACGTCAACCGT 1323
BSNT_00608___ 1342 GATGAAGAAAGCACATACGATTTAAAACGCTTGAAG---------AAAAA 1382
||||| ||..||..|||||..|.||||| |||||
BPUM_0210 1324 GATGA---------ATTTGACCTAAAAGACCTGAAGAGAATTCGTAAAAA 1364
BSNT_00608___ 1383 AAGCTTTTATTGGTATCAA-----GATGTCATCAAGACGAACGGAGAAA- 1426
.||||.|||.||||||.|| .|| |||.||| ||.|||||.|
BPUM_0210 1365 GAGCTCTTACTGGTATGAAACATTAAT-TCAGCAA----AATGGAGAGAA 1409
BSNT_00608___ 1427 -----GTTTATAA 1434
|...||||
BPUM_0210 1410 CATCGGGGAATAA 1422
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