Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00608 and BPUM_0210

See Amino acid alignment / Visit BSNT_00608 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:24
# Commandline: needle
#    -asequence dna-align/BSNT_00608___yckE.1.24716.seq
#    -bsequence dna-align/BPUM_0210.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00608___yckE-BPUM_0210.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00608___yckE-BPUM_0210.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00608___yckE
# 2: BPUM_0210
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1663
# Identity:     898/1663 (54.0%)
# Similarity:   898/1663 (54.0%)
# Gaps:         470/1663 (28.3%)
# Score: 2153.5
# 
#
#=======================================

BSNT_00608___      1 ATGA-----TC--CACCAGCATCCAAAATCTTTTCCGAAACATTTTTTGT     43
                     ||||     ||  |||.|||| |||      |||||.||..|.|||||.|
BPUM_0210          1 ATGAGATATTCAACACTAGCA-CCA------TTTCCAAAGGACTTTTTCT     43

BSNT_00608___     44 GGGGC---TCTGCTTCTGCAGCGTACCAGATTGAAGGCGCTTGGAATGAA     90
                     |||||   |||.|||   |.||.||.||..|.|||||.||.|||||.||.
BPUM_0210         44 GGGGCGGATCTACTT---CCGCCTATCAAGTAGAAGGTGCATGGAACGAG     90

BSNT_00608___     91 GATGGCAAAGGCCCTTCTGT--TTGGGATGTGTTTACGAAAATACCGGGC    138
                     |||||||||||.||.|||||  |||..|||               .|.||
BPUM_0210         91 GATGGCAAAGGGCCATCTGTCATTGATATG---------------AGAGC    125

BSNT_00608___    139 AAAACGTT----TAAAGGAACCAATGGCGAGATTGCGGTT----------    174
                     ||   |||    |.|||||||.|     .|||||    ||          
BPUM_0210        126 AA---GTTATCCTGAAGGAACAA-----CAGATT----TTAAAGTCGCAA    163

BSNT_00608___    175 --GACCATTATCACCGATTTAAAGAAGATGTCGCTCTGATGGCTGAGATG    222
                       ||.||.||||||||.|.||||||.|||||.....||.|.||.||.|||
BPUM_0210        164 GCGATCACTATCACCGCTATAAAGAGGATGTGAAGATGTTTGCAGAAATG    213

BSNT_00608___    223 GGGTTAAAAGCATATCGATTTTCCGT--CAGCTGGCCACGGGTTTTTCCA    270
                     ||.||.||.||.|||||.||.||..|  ||  |||.|||||.|..|||||
BPUM_0210        214 GGTTTGAAGGCTTATCGTTTCTCTATTGCA--TGGACACGGATCATTCCA    261

BSNT_00608___    271 AAAGGAAAAGGAGAGATCAATGAAGCAGGTCTAGCGTTTTACGATAGTCT    320
                     ||.|||.|.||.|||||||||.||...||..|.|..||.|||.||..|||
BPUM_0210        262 AATGGAGATGGGGAGATCAATCAAAAGGGGATTGAATTCTACCATTCTCT    311

BSNT_00608___    321 GATTGATGAATTGC----TTTCTCATCACATCGAGCCGGTTCTGACTTTA    366
                     .||.|||||.||||    ||    ||.|.||.||.||..|..||||..|.
BPUM_0210        312 CATCGATGAGTTGCGCCGTT----ATGATATTGAACCAATCGTGACAATG    357

BSNT_00608___    367 TATCACTGGGATTTGCCTCAAGCGCTTATGGACGAATACGGCGGGTTTG-    415
                     |||||.|..|||.|||||||.||.|||   .|.|.|.|.|||||  ||| 
BPUM_0210        358 TATCATTTTGATCTGCCTCATGCACTT---CAAGTAAAAGGCGG--TTGG    402

BSNT_00608___    416 ---AATCCAGAAACA-TCATAGAGGATTTTAATCACTACTGTATTACTCT    461
                        ||||..|..||| ||   ||.|..|||.|     ||.|||       
BPUM_0210        403 TCAAATCGTGCGACAGTC---GATGCGTTTGA-----ACGGTA-------    437

BSNT_00608___    462 TTATAAACGTTTT------GGAG-------ACAGGGTGAAATATTGGGTT    498
                      |..|||.|||.|      ||||       |.|.|||||||||||||.|.
BPUM_0210        438 -TGCAAAGGTTCTATTTCAGGAGTATGGTCAGAAGGTGAAATATTGGCTG    486

BSNT_00608___    499 ACGTTAAATGAACAGAACTACAATTTTAATCACGGATTTATTACAGCCAT    548
                     ||..|.||||||||.|||    ||..|.|||         |||    |||
BPUM_0210        487 ACCATTAATGAACAAAAC----ATGATGATC---------TTA----CAT    519

BSNT_00608___    549 GCATCCGC----------CTGGAGTGAAAGACAGAAAACGATTTTACGA-    587
                     |.|||.||          ||.||...|||...||||||      |.||| 
BPUM_0210        520 GGATCAGCGCTCGGTACACTTGATCCAAATTTAGAAAA------TCCGAA    563

BSNT_00608___    588 --------------AGCA-AACCAT-AT-TGCGTTTC-TGGCTAATGCAA    619
                                   |||| |||||| || |||   || |.|||.|.||.|
BPUM_0210        564 AAAAGAACTGTATCAGCAGAACCATCATATGC---TCGTCGCTCAAGCGA    610

BSNT_00608___    620 AAGCCATCGAATCATTTAGAGAATATG-TGCCTGAAGGCAAAATAGGTCC    668
                     ||||||| ||..|.||...|..|.||| |||||||||..|||||.||.||
BPUM_0210        611 AAGCCAT-GACGCTTTGTCATCAAATGCTGCCTGAAGCGAAAATTGGACC    659

BSNT_00608___    669 TAG-------CTTTG----CATATTCTCCGGCTTACCCTTTATTAAGCCA    707
                      ||       |.|||    ||| ||.||||||||..||      ||   |
BPUM_0210        660 -AGCGCCAAACATTGCGCTCAT-TTATCCGGCTTCTCC------AA---A    698

BSNT_00608___    708 TCCAGAGGATATACTGGCATTTGAAAACGCCGAAGAATTTATGAACAAT-    756
                     .||.||||||.||||.||   ||       ||..|||||     ||||| 
BPUM_0210        699 GCCTGAGGATGTACTTGC---TG-------CGGCGAATT-----ACAATG    733

BSNT_00608___    757 -----------TG---GTGGCTTGACATGTATTGCTGGGGAACCTAC--C    790
                                ||   ||..|||||    |||.||||     .||||  |
BPUM_0210        734 CGATCCGCAACTGGCTGTATCTTGA----TATGGCTG-----TCTACGGC    774

BSNT_00608___    791 CGCAAATTCCA-------TTCCGC-TACTTG---GAAAAACAGGGATGGG    829
                     ||| .||..||       ||..|| |||.||   ||||||          
BPUM_0210        775 CGC-TATAACAACCTTGCTTGGGCATACATGAAAGAAAAA----------    813

BSNT_00608___    830 CGCCGACA-----------ATCGAAGCAGGAGATATCGAGCTGCTTGCCA    868
                         ||||           ||.||||..||||||||.||..| .|||  |
BPUM_0210        814 ----GACATTCTTCCTGTCATTGAAGAGGGAGATATGGATAT-TTTG--A    856

BSNT_00608___    869 AA---GGGAAGCCTGATTTTGTAGGTGTCAATTATTA------TCAGACG    909
                     ||   |.||||||.||.||..|.|...|.||.||.||      |||.|||
BPUM_0210        857 AAAGTGCGAAGCCAGACTTCATTGCCTTTAACTACTACACATCTCAAACG    906

BSNT_00608___    910 AT---------------------CACCTATGAA------------CGAAA    926
                     .|                     ||.|.|||||            .||.|
BPUM_0210        907 GTTGAAGCGAGTAAAGGAGATGGCAACGATGAATTTGCTCGCGGCGGAGA    956

BSNT_00608___    927 TCCGC--TTGA----TGGTGTGTCAGAAGG-GAAAATGAATACGACAGGC    969
                     ||.||  ||||    |||||   .|||.|| |.|.||       |.||||
BPUM_0210        957 TCAGCATTTGAAATCTGGTG---AAGATGGCGTATAT-------AAAGGC    996

BSNT_00608___    970 CAAAAGGGAACCAATCAGGAGACGGGGATACCCGGAGTGTTCAAAACGAA   1019
                           ||.|.|||.|.|.|           ||..|||            
BPUM_0210        997 ------GGCAACAACCCGTA-----------CCTAAGT------------   1017

BSNT_00608___   1020 AAAAAATCCGCATCTGACAACAAGCAACTGGGATTGGACAATTGACGCAA   1069
                      ||||||  ||.|.||          .||||||      .||||||.|  
BPUM_0210       1018 -AAAAAT--GCGTTTG----------GCTGGGA------GATTGACCC--   1046

BSNT_00608___   1070 TTG--GGCTGCGTATCGGTCTTCG------CCGAATTACAAGCCGCTATC   1111
                      ||  ||||.|    ||.||..||      ..||.|||..| |||.||||
BPUM_0210       1047 -TGTCGGCTTC----CGATCAACGATGCGAGAGATTTATGA-CCGTTATC   1090

BSNT_00608___   1112 AGCTTCCAGTGTTTATAACAGAGAACGGTTTGGGTGAATTTGATAAAGTT   1161
                     ||.|.||..|..||||.||.||.|||||.|||||||..||.||.||| ||
BPUM_0210       1091 AGTTACCTCTTATTATCACGGAAAACGGATTGGGTGCTTTCGACAAA-TT   1139

BSNT_00608___   1162 ----GAGGACGGCACTGTACAGGATGATTATCGAATTGATTATTTACGTT   1207
                         ||.||.||..|..|.||.|||||.||||||||||||||||||    
BPUM_0210       1140 AGAAGAAGATGGATCGATTCAAGATGACTATCGAATTGATTATTTA----   1185

BSNT_00608___   1208 CG-----CATCTTGAGCAATGCAGACAAGCCATCAGTGACGGTGTTGATT   1252
                      |     |||.|.||.|||..||.|...||.||||..|||||.|||||..
BPUM_0210       1186 -GAAAAACATATCGAACAAATCAAATGGGCGATCACAGACGGCGTTGAGG   1234

BSNT_00608___   1253 TAATCGGCTATTGCAGCTGGTCGTTTACT-GATCTGTTAAGCTGGCTGA-   1300
                     |..||||.||.|||...||||| |..|.| |||||..|.|||      | 
BPUM_0210       1235 TCTTCGGATACTGCCCGTGGTC-TGCAATCGATCTAATCAGC------AC   1277

BSNT_00608___   1301 ACGGCTACCAA---------AAAAGATACGGATTTGTATATGTCAATCGT   1341
                     ||    |||||         ||..|.||||||||..|.||.|||||.|||
BPUM_0210       1278 AC----ACCAAGGATGCTCCAAGCGCTACGGATTCATCTACGTCAACCGT   1323

BSNT_00608___   1342 GATGAAGAAAGCACATACGATTTAAAACGCTTGAAG---------AAAAA   1382
                     |||||         ||..||..|||||..|.|||||         |||||
BPUM_0210       1324 GATGA---------ATTTGACCTAAAAGACCTGAAGAGAATTCGTAAAAA   1364

BSNT_00608___   1383 AAGCTTTTATTGGTATCAA-----GATGTCATCAAGACGAACGGAGAAA-   1426
                     .||||.|||.||||||.||     .|| |||.|||    ||.|||||.| 
BPUM_0210       1365 GAGCTCTTACTGGTATGAAACATTAAT-TCAGCAA----AATGGAGAGAA   1409

BSNT_00608___   1427 -----GTTTATAA   1434
                          |...||||
BPUM_0210       1410 CATCGGGGAATAA   1422


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