Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00416 and BPUM_0205
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00416___ybfQ.1.24716.seq
# -bsequence dna-align/BPUM_0205___ybfQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00416___ybfQ-BPUM_0205___ybfQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00416___ybfQ-BPUM_0205___ybfQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00416___ybfQ
# 2: BPUM_0205___ybfQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1008
# Identity: 737/1008 (73.1%)
# Similarity: 737/1008 (73.1%)
# Gaps: 78/1008 ( 7.7%)
# Score: 2677.5
#
#
#=======================================
BSNT_00416___ 1 ATGGAAAAACAATACAGAGTATTACTTTACTATAAATATGTTCCGATTGA 50
||||||||.|||||..||||.||||||||||||.|||||||.||.||.||
BPUM_0205___y 1 ATGGAAAAGCAATATCGAGTCTTACTTTACTATCAATATGTCCCCATCGA 50
BSNT_00416___ 51 AGATCCAGAGGCGTTTAGAG-AGCAGCATCTGGCTTTTTGTAAGGAGCTT 99
.||.||||||.||||||.|| || |||||.|.||.||.||||||||.|||
BPUM_0205___y 51 GGACCCAGAGACGTTTACAGCAG-AGCATTTAGCATTCTGTAAGGAACTT 99
BSNT_00416___ 100 GGTTTGTTAGGCCGTATCCTTGTTTCTTCTGAAGGAATTAACGGTACGGT 149
||.||.|||||||||||||||.|.||.||.|||||.||.|||||.|||||
BPUM_0205___y 100 GGATTATTAGGCCGTATCCTTATCTCATCAGAAGGCATCAACGGAACGGT 149
BSNT_00416___ 150 ATCAGGTACGGTTGAACAGACTGAAAAATATATGGAAACAATGAAAGCTG 199
.||.|||||..||||.||.||.||.||.||.||||||.||.|.||||..|
BPUM_0205___y 150 TTCTGGTACCATTGAGCAAACGGACAAGTACATGGAAGCATTAAAAGAAG 199
BSNT_00416___ 200 ATCCTCGCTTTGCGGACATGGTATTTAAAATTGATGAAGCAGAAGGCCAT 249
||||.|||||||||...|||....|.|||||||||||||||||.||.|||
BPUM_0205___y 200 ATCCGCGCTTTGCGTCTATGCCGATCAAAATTGATGAAGCAGACGGTCAT 249
BSNT_00416___ 250 GCCTTCAAAAAAATCTTCGTCCGCCATAAAAAAGAGCTTGTAACGCTTCG 299
||.||.||||||||...||||||||||..|||.||.||.||.|..||..|
BPUM_0205___y 250 GCGTTTAAAAAAATGCACGTCCGCCATCGAAATGAACTAGTGAATCTGAG 299
BSNT_00416___ 300 TCTTGAAGATGATGTCGATCCGAACGAAACAACAGGCCAGCATTTGAAGC 349
.||||||||||||||..|.|||...|||..||||||..|.|||.|.|..|
BPUM_0205___y 300 CCTTGAAGATGATGTGAACCCGTTAGAATTAACAGGTAAACATCTTAGCC 349
BSNT_00416___ 350 CTGCAGAATTTTATGAGAAGATGCAGGAT--CCAAACACAATTGTCATCG 397
|.|..||||||||.|||.|.||||| || ||..|.||..||||.||.|
BPUM_0205___y 350 CGGTTGAATTTTACGAGCAAATGCA--ATCACCTGATACCGTTGTGATTG 397
BSNT_00416___ 398 ACGCGCGTAACGATTACGAGTATGACCTTGGCCATTTCAGAGGTGCGGTC 447
|.||.|||||.||||||||||.|||..||||.||.||.|||||.||.||.
BPUM_0205___y 398 ATGCACGTAATGATTACGAGTTTGATGTTGGTCACTTTAGAGGGGCTGTT 447
BSNT_00416___ 448 CGTCCTGACATCGAAGCCTTCCGTGAATTACCTGAATGGATTGAAGAGCA 497
||||||||.||.||..|.||||||||||||||.||.||||||...||..|
BPUM_0205___y 448 CGTCCTGATATTGAGACGTTCCGTGAATTACCGGAGTGGATTCGTGACAA 497
BSNT_00416___ 498 CAAAGATATGCTTGAAGGCAAAAAGATTTTAACGTACTGTACAGGCGGCG 547
.|||||.||.||||||||.|||||.|||.|.|||||.||.|||||.||.|
BPUM_0205___y 498 TAAAGAGATTCTTGAAGGGAAAAAAATTCTGACGTATTGCACAGGTGGTG 547
BSNT_00416___ 548 TGCGCTGTGAAAAGTTCTCAGGATGGCTGG-TGAAGC---AAGGCTTTGA 593
|.||.||||||||.|||||| |||||| |.|||| ||||||||||
BPUM_0205___y 548 TACGTTGTGAAAAATTCTCA----GGCTGGTTAAAGCGTGAAGGCTTTGA 593
BSNT_00416___ 594 AGATGTAGCTCAGCTTGATGGCGGAATCGTGACATACGGAAAAGATCCAG 643
|||||||.||||||||||.||||||||.||.||.|||||||||||.||.|
BPUM_0205___y 594 AGATGTATCTCAGCTTGACGGCGGAATTGTCACGTACGGAAAAGACCCGG 643
BSNT_00416___ 644 AGGTGCAAGGCAAGCTTTGGGACGGCCAGTGCTACGTATTTGATGAAAGA 693
|.||.|||||.|||||||||||.||.||.||||||||.|||||| |
BPUM_0205___y 644 AAGTTCAAGGGAAGCTTTGGGATGGTCAATGCTACGTGTTTGAT-----A 688
BSNT_00416___ 694 ATCAGC------GTGCCTGTCAACCGTGTC-----GAGCATGTGATTGTC 732
.|| || ||||||||.|| || |||||||||.|||||
BPUM_0205___y 689 CTC-GCTTAACAGTGCCTGTGAA-----TCAAACAGAGCATGTGGTTGTC 732
BSNT_00416___ 733 GGCAAGGACTACTTTACAGGAGAACCGTGTGAGCGTTATGTGAACTGCGC 782
||.||.||.|.|||.||.||.||.||.||.|||||||||||||||||.||
BPUM_0205___y 733 GGAAAAGATTTCTTCACTGGTGAGCCTTGCGAGCGTTATGTGAACTGTGC 782
BSNT_00416___ 783 AAATCCATCTTGCAATAAA----AAAATGATATGCACACCG--GAAAATG 826
|||.|| ||||...|| |||||||| |||| ||.| ||||..|
BPUM_0205___y 783 AAACCC----TGCATGTAACCGCAAAATGAT-TGCA-ACAGAAGAAAGCG 826
BSNT_00416___ 827 AGTATAAATATATGCGCAGCTGCAGCCACGAATGCCGCAC----GAACCC 872
||.|||||||||||||.|||||||||||.|||||.||.|| ||||
BPUM_0205___y 827 AGCATAAATATATGCGAAGCTGCAGCCATGAATGTCGTACAAGTGAAC-- 874
BSNT_00416___ 873 AAGAAACCTGTATGTGAAAGAGCATAATATGACAGAAGAAGAAGTAAACG 922
|.|||||.|||||||||.||||||||.||.|.|||||||||||..|.|
BPUM_0205___y 875 --GTAACCTATATGTGAAACAGCATAATCTGTCTGAAGAAGAAGTGCAAG 922
BSNT_00416___ 923 CAAGACTGGCAGCGATTGAAACAGAA-----GATCACGCTGCTGCTGAAT 967
.||||.|.||.|.|||||||..|||| ||||.| |.
BPUM_0205___y 923 AAAGATTAGCTGTGATTGAACAAGAACAAGCGATCTC-----------AC 961
BSNT_00416___ 968 AA------ 969
||
BPUM_0205___y 962 AAGGATAG 969
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