Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00999 and BPUM_0198

See Amino acid alignment / Visit BSNT_00999 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:39
# Commandline: needle
#    -asequence dna-align/BSNT_00999___ydhL.1.24716.seq
#    -bsequence dna-align/BPUM_0198___ydhL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00999___ydhL-BPUM_0198___ydhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00999___ydhL-BPUM_0198___ydhL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00999___ydhL
# 2: BPUM_0198___ydhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1293
# Identity:     767/1293 (59.3%)
# Similarity:   767/1293 (59.3%)
# Gaps:         246/1293 (19.0%)
# Score: 1938.0
# 
#
#=======================================

BSNT_00999___      1 ATGAATTTCAAAGT---TTTCCTGCTT-GCAGCTTCTACGATTGCAGTCG     46
                     |||||.|..|.|||   |||    .|| ||.|.||||||..|||||||.|
BPUM_0198___y      1 ATGAACTGGAGAGTATATTT----ATTAGCCGTTTCTACATTTGCAGTAG     46

BSNT_00999___     47 GATTGGTTGAGTTAATTGTGGGGGGAATTCTTCC---TCAGATCGCAAAT     93
                     ||||.||||||.|..||||.||.||.||..|.||   ||   |.|||.|.
BPUM_0198___y     47 GATTAGTTGAGCTTGTTGTCGGAGGCATATTGCCAAGTC---TTGCAGAG     93

BSNT_00999___     94 GATTTAGACATTTCCATTGTTTCAGCCGGACAGCTGATCAGTGTGTTTGC    143
                     |||||..|..|.||..|||...||||.||.|||||.||||..||.|||||
BPUM_0198___y     94 GATTTGAATGTATCACTTGCGACAGCTGGGCAGCTAATCACCGTATTTGC    143

BSNT_00999___    144 GCTGGGATATG------CAGTATCTGGGCCGCTGCTTTTGGCATTG--AC    185
                     ..|.|..||||      |||.|.|||.||.||||        |.||  ||
BPUM_0198___y    144 CATTGTGTATGCCATTTCAGCACCTGTGCTGCTG--------ACTGCCAC    185

BSNT_00999___    186 TGCAAGGATTGAGCGGAAGCG-CTTATATCTAATTGCTTTATT--TGTTT    232
                     .||.|..|||||.||.||||| ||| |||.||||.||||||||  |||||
BPUM_0198___y    186 AGCTAAAATTGAACGAAAGCGTCTT-TATTTAATCGCTTTATTGGTGTTT    234

BSNT_00999___    233 -------------TCTTCCTTAGCA-ATCTTA--TCG-CCTACTTCAGCC    265
                                  |||||    .|| ||.|||  ||| |||  ||  |||
BPUM_0198___y    235 ACAATAGGGAATGTCTTC----ACATATTTTAGTTCGACCT--TT--GCC    276

BSNT_00999___    266 CTAATTTCGCAACACTGATGGTATCTAGGGTATTGGCGGCGATGAGTACA    315
                     ||  |.||         |||.|.||||||||||||...||||||||||||
BPUM_0198___y    277 CT--TGTC---------ATGATCTCTAGGGTATTGATCGCGATGAGTACA    315

BSNT_00999___    316 GGGCTGATTGTTGTGCTTTCTTTAACGAT---TGCCCCGAAAATTGTTGC    362
                     |.|||..|.||.|||.|.||..|.|||||   |||    .|||||..|| 
BPUM_0198___y    316 GCGCTAGTGGTGGTGTTGTCACTGACGATCACTGC----TAAATTAGTG-    360

BSNT_00999___    363 GCCTGAATACAGAGC-CCGCGCAA------TCGGAATTATTTTTA-TGGG    404
                         ||| .|||.|| .||.||||      |.||..|.||||||| ||||
BPUM_0198___y    361 ----GAA-CCAGCGCATCGTGCAAAGTCACTAGGGCTGATTTTTATTGGG    405

BSNT_00999___    405 TTTCAGCTCTGCTATCGCATTAGGTGTGCCGCTCGGAATCTTAAT--CAG    452
                     .|| ||.|||.|..|.|...|.|||||.|||.||||.||.||.||  |||
BPUM_0198___y    406 ATT-AGTTCTTCACTGGTTCTCGGTGTACCGATCGGTATTTTTATTACAG    454

BSNT_00999___    453 CGATTCCTTCGGGTGGCGGATTTTGTTCCTTGGCATCGGCCTGTTGGC-G    501
                     .||  .|||.||.|||.|..|..||||..|.||.|||.|..|.||..| |
BPUM_0198___y    455 AGA--GCTTTGGCTGGAGAGTGATGTTTTTAGGAATCAGTATTTTATCAG    502

BSNT_00999___    502 CTGATCTCCA---TGCTGAT-TATTTCAATCTTCTTTGAAAGAATACCGG    547
                     | |||.||.|   ||||||| ||||    ||.|.||.||.|.|||.||.|
BPUM_0198___y    503 C-GATATCGATGGTGCTGATCTATT----TCCTATTGGACAAAATGCCTG    547

BSNT_00999___    548 CGGAAAAAATGATTCCTTTCCGGGAACAGCTCAAGACGATC----GGTAA    593
                     ..||||||.|||..|||.||.|.||.||    ||..||.||    ||..|
BPUM_0198___y    548 TTGAAAAAGTGACACCTCTCAGAGAGCA----AATTCGCTCTTTAGGGCA    593

BSNT_00999___    594 TCTGAAAATCGCGAGTTCACACCTCGTCACGATGTTTACATTAGCTGGCC    643
                     ||.||||||....|||.|||||.|..|||...||||||...|.||.||.|
BPUM_0198___y    594 TCCGAAAATTTTTAGTGCACACTTGATCAGTTTGTTTATGCTTGCAGGTC    643

BSNT_00999___    644 ACTACACGCTTTACGCTTACTTTGCGCCGTTTTTA---GAAGAGACTCTT    690
                     |.||.|.||||||..||||.||..|.||.||||||   ||||   .|||.
BPUM_0198___y    644 ATTATATGCTTTATTCTTATTTCACTCCATTTTTAATGGAAG---TTCTG    690

BSNT_00999___    691 CACCTGAGCTCTTTCTGGGTCAGCATTTGTTATTTCCTTTTCGGGATATC    740
                     ||..|||.|.|.||||||.|.||.|||||||||||..|.||||||.|   
BPUM_0198___y    691 CATATGACCCCGTTCTGGATTAGTATTTGTTATTTGGTCTTCGGGCT---    737

BSNT_00999___    741 TGCC-GTAT--GCGG---AGGCCCTTTCGGAGGAGCGCTATCTGACCGGC    784
                     |||| .|||  ||||   .||   .||.||.||...|||...||||..||
BPUM_0198___y    738 TGCCTCTATTGGCGGGAATGG---ATTTGGCGGCTGGCTCAGTGACAAGC    784

BSNT_00999___    785 TTGGTTCCTTTAAGAG-----CATTTTGCTGGTGAC---CGGTTCCTTTG    826
                     |.|||||     ||.|     |||.|||||||||||   ||   |.||||
BPUM_0198___y    785 TAGGTTC-----AGGGAAAGCCATCTTGCTGGTGACAATCG---CGTTTG    826

BSNT_00999___    827 CCATCATTATGTT--------CTTACTGCCGCTGTCTACATCGTCTATGA    868
                     ||.|..|.|||||        ||||           ||||.||..|.||.
BPUM_0198___y    827 CCGTTGTGATGTTTATCATTCCTTA-----------TACAGCGGGTGTGT    865

BSNT_00999___    869 TT-TTCTTTTTGCCTG-TCATG---GTGATTTGGGGTCTTCTGAGCTGGA    913
                     || ||||.|||  .|| |||||   ||..|.|||||....||.|||||| 
BPUM_0198___y    866 TTGTTCTCTTT--ATGATCATGGTTGTCCTATGGGGAGCGCTTAGCTGG-    912

BSNT_00999___    914 GCCT---CGCCCCGGCTCAGCAAAGCTATTTAATTGAAATTGCACCTGAT    960
                     ||.|   ||  ||.||...|||.||.|||||.|||.|||..|..||||..
BPUM_0198___y    913 GCATTAACG--CCTGCCTTGCAGAGTTATTTGATTCAAACCGATCCTGTC    960

BSNT_00999___    961 TCGTCTGACATTCAGCAAAGCTTTAACACATCGGCCCTCCAAGTCGGAAT   1010
                     .|||||||.||||||||||||||.||.||||||||..|.|||.|.||.||
BPUM_0198___y    961 ACGTCTGATATTCAGCAAAGCTTAAATACATCGGCGTTGCAAATTGGTAT   1010

BSNT_00999___   1011 TGCCCTTGGCTCAGCCATTGGCGGTGT--TGTTTTGGATCAAACGGGTAC   1058
                     ..|..||||.|||||..||||.|||||  |.|||..|||  .||.|||  
BPUM_0198___y   1011 CTCGATTGGATCAGCGGTTGGTGGTGTCCTATTTACGAT--GACCGGT--   1056

BSNT_00999___   1059 TGTGGTGTCAACAGCATGGTGCGGCGGGTCAATT-------GTGATCATC   1101
                            |||.|.| .||.|..||||   .||||       |||.|    
BPUM_0198___y   1057 -------TCATCTG-TTGATCTGGCG---AAATTCGGTGTAGTGTT----   1091

BSNT_00999___   1102 GCTGTCCTGTTTGCTT------------TCATTTCTTTAACAAGACC---   1136
                       |||.|||.||||.|            |.|||||.||.|.||||||   
BPUM_0198___y   1092 --TGTGCTGATTGCCTTTAGCTGTGCGGTAATTTCGTTGAAAAGACCACC   1139

BSNT_00999___   1137 ---------TGTTCAGACAGCAAAAAAATCCTCCTTGTAA---   1167
                              .|.|| |.||||      |||.|.||  .||   
BPUM_0198___y   1140 ACTTTATATGGATC-GTCAGC------ATCGTGCT--GAATAG   1173


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.