Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00999 and BPUM_0198
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_00999___ydhL.1.24716.seq
# -bsequence dna-align/BPUM_0198___ydhL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00999___ydhL-BPUM_0198___ydhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00999___ydhL-BPUM_0198___ydhL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00999___ydhL
# 2: BPUM_0198___ydhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1293
# Identity: 767/1293 (59.3%)
# Similarity: 767/1293 (59.3%)
# Gaps: 246/1293 (19.0%)
# Score: 1938.0
#
#
#=======================================
BSNT_00999___ 1 ATGAATTTCAAAGT---TTTCCTGCTT-GCAGCTTCTACGATTGCAGTCG 46
|||||.|..|.||| ||| .|| ||.|.||||||..|||||||.|
BPUM_0198___y 1 ATGAACTGGAGAGTATATTT----ATTAGCCGTTTCTACATTTGCAGTAG 46
BSNT_00999___ 47 GATTGGTTGAGTTAATTGTGGGGGGAATTCTTCC---TCAGATCGCAAAT 93
||||.||||||.|..||||.||.||.||..|.|| || |.|||.|.
BPUM_0198___y 47 GATTAGTTGAGCTTGTTGTCGGAGGCATATTGCCAAGTC---TTGCAGAG 93
BSNT_00999___ 94 GATTTAGACATTTCCATTGTTTCAGCCGGACAGCTGATCAGTGTGTTTGC 143
|||||..|..|.||..|||...||||.||.|||||.||||..||.|||||
BPUM_0198___y 94 GATTTGAATGTATCACTTGCGACAGCTGGGCAGCTAATCACCGTATTTGC 143
BSNT_00999___ 144 GCTGGGATATG------CAGTATCTGGGCCGCTGCTTTTGGCATTG--AC 185
..|.|..|||| |||.|.|||.||.|||| |.|| ||
BPUM_0198___y 144 CATTGTGTATGCCATTTCAGCACCTGTGCTGCTG--------ACTGCCAC 185
BSNT_00999___ 186 TGCAAGGATTGAGCGGAAGCG-CTTATATCTAATTGCTTTATT--TGTTT 232
.||.|..|||||.||.||||| ||| |||.||||.|||||||| |||||
BPUM_0198___y 186 AGCTAAAATTGAACGAAAGCGTCTT-TATTTAATCGCTTTATTGGTGTTT 234
BSNT_00999___ 233 -------------TCTTCCTTAGCA-ATCTTA--TCG-CCTACTTCAGCC 265
||||| .|| ||.||| ||| ||| || |||
BPUM_0198___y 235 ACAATAGGGAATGTCTTC----ACATATTTTAGTTCGACCT--TT--GCC 276
BSNT_00999___ 266 CTAATTTCGCAACACTGATGGTATCTAGGGTATTGGCGGCGATGAGTACA 315
|| |.|| |||.|.||||||||||||...||||||||||||
BPUM_0198___y 277 CT--TGTC---------ATGATCTCTAGGGTATTGATCGCGATGAGTACA 315
BSNT_00999___ 316 GGGCTGATTGTTGTGCTTTCTTTAACGAT---TGCCCCGAAAATTGTTGC 362
|.|||..|.||.|||.|.||..|.||||| ||| .|||||..||
BPUM_0198___y 316 GCGCTAGTGGTGGTGTTGTCACTGACGATCACTGC----TAAATTAGTG- 360
BSNT_00999___ 363 GCCTGAATACAGAGC-CCGCGCAA------TCGGAATTATTTTTA-TGGG 404
||| .|||.|| .||.|||| |.||..|.||||||| ||||
BPUM_0198___y 361 ----GAA-CCAGCGCATCGTGCAAAGTCACTAGGGCTGATTTTTATTGGG 405
BSNT_00999___ 405 TTTCAGCTCTGCTATCGCATTAGGTGTGCCGCTCGGAATCTTAAT--CAG 452
.|| ||.|||.|..|.|...|.|||||.|||.||||.||.||.|| |||
BPUM_0198___y 406 ATT-AGTTCTTCACTGGTTCTCGGTGTACCGATCGGTATTTTTATTACAG 454
BSNT_00999___ 453 CGATTCCTTCGGGTGGCGGATTTTGTTCCTTGGCATCGGCCTGTTGGC-G 501
.|| .|||.||.|||.|..|..||||..|.||.|||.|..|.||..| |
BPUM_0198___y 455 AGA--GCTTTGGCTGGAGAGTGATGTTTTTAGGAATCAGTATTTTATCAG 502
BSNT_00999___ 502 CTGATCTCCA---TGCTGAT-TATTTCAATCTTCTTTGAAAGAATACCGG 547
| |||.||.| ||||||| |||| ||.|.||.||.|.|||.||.|
BPUM_0198___y 503 C-GATATCGATGGTGCTGATCTATT----TCCTATTGGACAAAATGCCTG 547
BSNT_00999___ 548 CGGAAAAAATGATTCCTTTCCGGGAACAGCTCAAGACGATC----GGTAA 593
..||||||.|||..|||.||.|.||.|| ||..||.|| ||..|
BPUM_0198___y 548 TTGAAAAAGTGACACCTCTCAGAGAGCA----AATTCGCTCTTTAGGGCA 593
BSNT_00999___ 594 TCTGAAAATCGCGAGTTCACACCTCGTCACGATGTTTACATTAGCTGGCC 643
||.||||||....|||.|||||.|..|||...||||||...|.||.||.|
BPUM_0198___y 594 TCCGAAAATTTTTAGTGCACACTTGATCAGTTTGTTTATGCTTGCAGGTC 643
BSNT_00999___ 644 ACTACACGCTTTACGCTTACTTTGCGCCGTTTTTA---GAAGAGACTCTT 690
|.||.|.||||||..||||.||..|.||.|||||| |||| .|||.
BPUM_0198___y 644 ATTATATGCTTTATTCTTATTTCACTCCATTTTTAATGGAAG---TTCTG 690
BSNT_00999___ 691 CACCTGAGCTCTTTCTGGGTCAGCATTTGTTATTTCCTTTTCGGGATATC 740
||..|||.|.|.||||||.|.||.|||||||||||..|.||||||.|
BPUM_0198___y 691 CATATGACCCCGTTCTGGATTAGTATTTGTTATTTGGTCTTCGGGCT--- 737
BSNT_00999___ 741 TGCC-GTAT--GCGG---AGGCCCTTTCGGAGGAGCGCTATCTGACCGGC 784
|||| .||| |||| .|| .||.||.||...|||...||||..||
BPUM_0198___y 738 TGCCTCTATTGGCGGGAATGG---ATTTGGCGGCTGGCTCAGTGACAAGC 784
BSNT_00999___ 785 TTGGTTCCTTTAAGAG-----CATTTTGCTGGTGAC---CGGTTCCTTTG 826
|.||||| ||.| |||.||||||||||| || |.||||
BPUM_0198___y 785 TAGGTTC-----AGGGAAAGCCATCTTGCTGGTGACAATCG---CGTTTG 826
BSNT_00999___ 827 CCATCATTATGTT--------CTTACTGCCGCTGTCTACATCGTCTATGA 868
||.|..|.||||| |||| ||||.||..|.||.
BPUM_0198___y 827 CCGTTGTGATGTTTATCATTCCTTA-----------TACAGCGGGTGTGT 865
BSNT_00999___ 869 TT-TTCTTTTTGCCTG-TCATG---GTGATTTGGGGTCTTCTGAGCTGGA 913
|| ||||.||| .|| ||||| ||..|.|||||....||.||||||
BPUM_0198___y 866 TTGTTCTCTTT--ATGATCATGGTTGTCCTATGGGGAGCGCTTAGCTGG- 912
BSNT_00999___ 914 GCCT---CGCCCCGGCTCAGCAAAGCTATTTAATTGAAATTGCACCTGAT 960
||.| || ||.||...|||.||.|||||.|||.|||..|..||||..
BPUM_0198___y 913 GCATTAACG--CCTGCCTTGCAGAGTTATTTGATTCAAACCGATCCTGTC 960
BSNT_00999___ 961 TCGTCTGACATTCAGCAAAGCTTTAACACATCGGCCCTCCAAGTCGGAAT 1010
.|||||||.||||||||||||||.||.||||||||..|.|||.|.||.||
BPUM_0198___y 961 ACGTCTGATATTCAGCAAAGCTTAAATACATCGGCGTTGCAAATTGGTAT 1010
BSNT_00999___ 1011 TGCCCTTGGCTCAGCCATTGGCGGTGT--TGTTTTGGATCAAACGGGTAC 1058
..|..||||.|||||..||||.||||| |.|||..||| .||.|||
BPUM_0198___y 1011 CTCGATTGGATCAGCGGTTGGTGGTGTCCTATTTACGAT--GACCGGT-- 1056
BSNT_00999___ 1059 TGTGGTGTCAACAGCATGGTGCGGCGGGTCAATT-------GTGATCATC 1101
|||.|.| .||.|..|||| .|||| |||.|
BPUM_0198___y 1057 -------TCATCTG-TTGATCTGGCG---AAATTCGGTGTAGTGTT---- 1091
BSNT_00999___ 1102 GCTGTCCTGTTTGCTT------------TCATTTCTTTAACAAGACC--- 1136
|||.|||.||||.| |.|||||.||.|.||||||
BPUM_0198___y 1092 --TGTGCTGATTGCCTTTAGCTGTGCGGTAATTTCGTTGAAAAGACCACC 1139
BSNT_00999___ 1137 ---------TGTTCAGACAGCAAAAAAATCCTCCTTGTAA--- 1167
.|.|| |.|||| |||.|.|| .||
BPUM_0198___y 1140 ACTTTATATGGATC-GTCAGC------ATCGTGCT--GAATAG 1173
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