Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06256 and BPUM_0186
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:42
# Commandline: needle
# -asequence dna-align/BSNT_06256___yyaL.1.24716.seq
# -bsequence dna-align/BPUM_0186___yyaL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06256___yyaL-BPUM_0186___yyaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06256___yyaL-BPUM_0186___yyaL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06256___yyaL
# 2: BPUM_0186___yyaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2272
# Identity: 1273/2272 (56.0%)
# Similarity: 1273/2272 (56.0%)
# Gaps: 590/2272 (26.0%)
# Score: 3513.0
#
#
#=======================================
BSNT_06256___ 0 -------------------------------------------------- 0
BPUM_0186___y 1 ATGTCAAATAACCAAACACCCAACCCACTCATCACGGAAAAATCACCATA 50
BSNT_06256___ 0 -------------------------------------------------- 0
BPUM_0186___y 51 CCTCCTTCAACACGCCCACAACCCAGTACACTGGTATCCGTGGGGGCAAG 100
BSNT_06256___ 0 -------------------------------------------------- 0
BPUM_0186___y 101 AAGCATTTGACAAAGCCAAACGTGAAAATAAGCCAGTGCTTGTCAGCATC 150
BSNT_06256___ 1 ------------------------------ATGGCCCACGAAAGCTTTGA 20
|||||.||.||||||||.||
BPUM_0186___y 151 GGTTATGCCACTTGCCACTGGTGTCATGTCATGGCACATGAAAGCTTCGA 200
BSNT_06256___ 21 AGATGAAGAAATCGC--GCGTCTTCTCAATGAACGGTTTGTGGCGATTAA 68
||||.|..||.|.|| .|.||| |.|||||.|..||..|..|.||.||
BPUM_0186___y 201 AGATCAGCAAGTTGCTGACATCT--TAAATGAGCATTTCATTTCAATCAA 248
BSNT_06256___ 69 AGTCGACCGGGAAGAGCGGCCGGATGTGGATTCTGTTTATATGAGAATC- 117
||||||.||.||.|||||.||.|||.|.|||||..|.|||||| ||
BPUM_0186___y 249 AGTCGATCGTGAGGAGCGTCCAGATATCGATTCGATGTATATG----TCT 294
BSNT_06256___ 118 ---TGCCAGCTGATGACCGGGCAGGGCGGCTGGCCGCTGAATGTGTTTAT 164
||.|||.|||||||.|||||.||||||||||||||.||.||||||.|
BPUM_0186___y 295 GTTTGTCAGATGATGACGGGGCAAGGCGGCTGGCCGCTCAACGTGTTTGT 344
BSNT_06256___ 165 CACGCCTGATCAGAAGCCGTTTTACGCGGGTACATATTTTCC--AAAGAC 212
||||||||||||.|||||.|||||.|||||.||.|||||||| |||||.
BPUM_0186___y 345 CACGCCTGATCAAAAGCCTTTTTATGCGGGGACGTATTTTCCAAAAAGAA 394
BSNT_06256___ 213 GAGCAAATT-CAATCGTCCCGGTTTTGTTGATGTGCT-TGA-GCATCTGT 259
|.|| || |...||.||.||.|||.|.|| .||| ||| .||.|||
BPUM_0186___y 395 GTGC---TTACGGACGCCCTGGCTTTATCGA--AGCTCTGACACAACTG- 438
BSNT_06256___ 260 CTGAGACG--TTTGCGAACGACCGCGAGCATGTCGAGGAT-ATT-GCGGA 305
|| ||||| |.|...|||||.|||||.|||.|||| || ||| ||.||
BPUM_0186___y 439 CT-AGACGCATATCACAACGATCGCGATCATATCGA--ATCATTGGCAGA 485
BSNT_06256___ 306 GAACGCCGCTAAACATTTGCAGACCAAAACAGCCGCCAAATCAGGCGAAG 355
|||.||..|.||..||.|||.||.||||.||| |||| |.||
BPUM_0186___y 486 GAAGGCGACAAATAATCTGCGGATCAAAGCAG---------CAGG-GCAG 525
BSNT_06256___ 356 GCCTTAGCGAGTCAGCGATTCACC----GGACATTCC------------A 389
.| ||.||.|..|| ||||| .|||..||| |
BPUM_0186___y 526 AC---AGAGAATACGC---TCACCCAAGAGACGATCCACAAAGCCTATTA 569
BSNT_06256___ 390 GCAGCT--TGCCAGCGGGTTTGATACGATCTACGGCGGTTTCGGGCA-GG 436
.||||| || |||.|.|||||||||.|..|||||||.||| |||| .|
BPUM_0186___y 570 TCAGCTCATG--AGCAGTTTTGATACGCTGCACGGCGGGTTC-GGCACTG 616
BSNT_06256___ 437 CACCGAAATTTCCGATGCCCCATATGCTGATGTAT--TTGCTTCGTTATC 484
|.||.|||||.|||...||.|||||||| |..|| |||.|.||.|
BPUM_0186___y 617 CGCCAAAATTCCCGGCACCTCATATGCT--TTCATTCTTGATGCGCT--- 661
BSNT_06256___ 485 ATCAC-AAT--ACGGGGCAGGAGAA--CGCTTTATACAACGTGACGAAAA 529
||.|| ||| ||.||||||||.|| ||||.|||.|| ||.|||||||
BPUM_0186___y 662 ATTACGAATGGACTGGGCAGGAAAATGCGCTATATGCA--GTCACGAAAA 709
BSNT_06256___ 530 CGCTGGACAGCATGGCGAATGGCGGCATTTACGATCATATCGGCTATGGG 579
||.|.||..|.||.||.||||||||.||.|||||.|||.||||.|..||.
BPUM_0186___y 710 CGTTAGATGGAATCGCAAATGGCGGTATATACGACCATGTCGGTTCAGGT 759
BSNT_06256___ 580 TTCGCCCGCTATTCGACCGATGACGAGTGGCTCGTTCCCCATTTTGAAAA 629
||..|.||.|||||.||.||.||..|.|||||.||.||.|||||||||||
BPUM_0186___y 760 TTTTCTCGTTATTCAACAGACGAAAAATGGCTTGTGCCGCATTTTGAAAA 809
BSNT_06256___ 630 AATGCTGTACGACAATGCGCTGCTGCTGACCGCTTATACAGAAGCCTATC 679
.||||||||.||.||.||..||||..||...|||||.||||||||.||||
BPUM_0186___y 810 GATGCTGTATGATAACGCCTTGCTCATGGAGGCTTACACAGAAGCGTATC 859
BSNT_06256___ 680 AGGTCACGCAAAACAGCC--GCTATAAAGAGATTTGT-GAGCAGATCATT 726
||.||||.| ||||.|| ..|||.||.|| .|||| .|.|...|.|||
BPUM_0186___y 860 AGCTCACTC--AACAACCTACATATGAAAAG-CTTGTCCACCGCCTAATT 906
BSNT_06256___ 727 -ACGTTCATTCAGAGGGAAATGACTCATGAAGACGGAAG---CTTTTT-C 771
|| ||.||..|.||.||.||| |||||..||||.| |||||| .
BPUM_0186___y 907 CAC-TTTATCAAAAGAGATATG----ATGAATCCGGATGGCTCTTTTTAT 951
BSNT_06256___ 772 TCTGCTTTAGACGCGGATACAGAAGGAGAAGAAGGAAAGTACTACGTGTG 821
||.||..||||.||.|||.|.||.||..||||||||.|.|..||.||.||
BPUM_0186___y 952 TCAGCGATAGATGCAGATTCTGAGGGGAAAGAAGGACAATTTTATGTCTG 1001
BSNT_06256___ 822 GTCAAAGGAAGAAATTCTGAAAACGCTC-----GGGGACGATCTCGGAAC 866
||||||.||.|||||..||| ||| ||.||.||.||||| |
BPUM_0186___y 1002 GTCAAAAGATGAAATCATGA-----CTCATTTAGGCGAGGACCTCGG--C 1044
BSNT_06256___ 867 GCTGTAT--TGCCAAGTGTATGACATCACTGAAGAAGGAAACTTTGAAGG 914
||..||| |||...||.||..|||||||.||.||.||.|||||||||||
BPUM_0186___y 1045 GCATTATTCTGCGCTGTCTACCACATCACAGATGAGGGGAACTTTGAAGG 1094
BSNT_06256___ 915 CAAAAATATTCCTAACCTCATTCACACAAAGTGGGAACAAATCAAAGCC- 963
..|.||.||.|||.|...||||..|||....|..||..|.|||||.|||
BPUM_0186___y 1095 GGAGAACATCCCTCATACCATTTCCACCTCTTTTGATGACATCAAGGCCT 1144
BSNT_06256___ 964 -----------GATGCCGGGTTAACCGAAAAAGAGCT-CAGTCTCAAACT 1001
|||| ||| ||..||| |||||| ||.||
BPUM_0186___y 1145 CTTTTTCAATTGATG--------ACC----AAACGCTCCAGTCT-AAGCT 1181
BSNT_06256___ 1002 CGAAGAAGC---------------------AAGACAGCAGCTCTTGAAGA 1030
..||||||| .|||||||||| ||
BPUM_0186___y 1182 GCAAGAAGCCCGATACATTTTACAATCTGTCAGACAGCAGC-------GA 1224
BSNT_06256___ 1031 CACGCGAGGAAAGAACCTATCCGCATGTCGATGATAAAGTGCTTACCTCA 1080
|.|||| ||.|.|||||||||.||||||||.||.|||
BPUM_0186___y 1225 CCCGCG--------------CCACTTGTCGATGACAAAGTGCTCACATCA 1260
BSNT_06256___ 1081 TGGAACGCGCTGATGATCGCGGGTCTTGCGAAAGCGGCAAAGGT-----A 1125
|||||.|||||.||||||.|.|..||.||.|||.|.|.||.||| |
BPUM_0186___y 1261 TGGAATGCGCTCATGATCTCTGCGCTCGCCAAAACAGGAAGGGTCTTTGA 1310
BSNT_06256___ 1126 TAC-CAGGAACCGAAATATCTCAGCCTAGCGAAAGACGCCATCACATTTA 1174
|.| .|||||.|.| ||.|..|.||.|||.|.||.|||.|.|||.
BPUM_0186___y 1311 TGCAGAGGAAGCCA------TCCGTATGGCAAAACAGGCGATCTCTTTTC 1354
BSNT_06256___ 1175 TTGAAA-ACAAATTAATCATCG------ACGGCCGTGTAATGGTCCGATA 1217
|.|||| ||| |.||| |.|..|||.|.|||||||||||
BPUM_0186___y 1355 TAGAAACACA-------CCTCGTCCAACATGATCGTCTCATGGTCCGATA 1397
BSNT_06256___ 1218 TCGAGACGGCGAAGTGAAAAACAAAGGCTTTATCGACGATTACGCTTTTC 1267
|.||||.||.||.||.||..|....|||||||||||.|||||.||...|.
BPUM_0186___y 1398 TAGAGAAGGTGACGTCAAGCATCTCGGCTTTATCGAGGATTATGCGCATA 1447
BSNT_06256___ 1268 TCCTATGGGCTTATCTGGATCTCTAT--GAAGCTTCGTTTGATCTTTCTT 1315
|.|||...||.|||.|| |||.||| |||||..|.|||||
BPUM_0186___y 1448 TGCTAAAAGCGTATATG--TCTTTATACGAAGCGACCTTTGA-------- 1487
BSNT_06256___ 1316 ATTTACA-------AAAAGCGAAGAAACTGACA--GACGATATCATCAGC 1356
|||..|| ||||| |.|||.|.|| |.|||.|.||| |.
BPUM_0186___y 1488 ATTAGCATGGCTGGAAAAG----GCAACAGCCATTGCCGAGAACAT--GT 1531
BSNT_06256___ 1357 T-----TATTTTGGGATGAGGAGCATGGCGGATTCTACTTCACCGGA-CA 1400
| |.||||||||..||||..|.||.||.||.|.||||.|.||| ||
BPUM_0186___y 1532 TTGAACTGTTTTGGGACAAGGAAAAAGGGGGCTTTTTCTTCTCAGGATCA 1581
BSNT_06256___ 1401 CGATGCAGAAGCCTTAATCGTACGGGAAAAAGAAGTGTACGACGGCGCCG 1450
|||||.|||||..|..||||.||.||||||||||||||||||||.|||.
BPUM_0186___y 1582 -GATGCGGAAGCGCTCCTCGTTCGAGAAAAAGAAGTGTACGACGGTGCCA 1630
BSNT_06256___ 1451 TGCCTTCCGGAAACAG--------TGTGGCGGCTGTTCAGCTGCT--GC- 1489
|||||||.||.||||| |...||..||..||| |.|| ||
BPUM_0186___y 1631 TGCCTTCTGGCAACAGCACCGCACTCAAGCACCTTCTCA--TACTAAGCA 1678
BSNT_06256___ 1490 GTCT---CGGGCAAGTCACA---GGC--GACTCATCACTAATTGAAAAAG 1531
|.|| ||| |.||||.| ||| |||.||| .|.||
BPUM_0186___y 1679 GACTGACCGG--ACGTCAGAATTGGCTGGACACAT----------TAGAG 1716
BSNT_06256___ 1532 CAGAAACGATGTTTTCCGTGTT-CAAGCCAGACA-------TCGACG--- 1570
|||| |||| |||| || ||||.|
BPUM_0186___y 1717 CAGA--------------TGTTCCAAG-----CATTTTATGTCGATGTTT 1747
BSNT_06256___ 1571 ---CGTATCCGAGCGGCCATGC----TTTCTTTATGCAAAGTGTATTAAG 1613
|.|||||.|||||.|||.| |||| |||| |.|
BPUM_0186___y 1748 CTTCCTATCCAAGCGGTCATACAGCATTTC----TGCA---------AGG 1784
BSNT_06256___ 1614 ACATCT-------GATGC--CTAAGAAAGAAATCGTGATTTTTGGAAGTG 1654
.|.||| .|||| |.||.|.|||||||.|.|||.|.||||
BPUM_0186___y 1785 GCTTCTCGCTCAATATGCAACGAAAAGAGAAATCATCATTCTCGGAA--- 1831
BSNT_06256___ 1655 CA----GACGATCCAGCCAGAAAACAAATCA----TAACA-GAGCTCCAA 1695
| |.|||.|| .|| ||||.|| || |.||| |.|||.|||
BPUM_0186___y 1832 -AAAATGGCGACCC--TCA-AAAAGAA--CAGCTTTTACAGGCGCTTCAA 1875
BSNT_06256___ 1696 AAAGCCTTTAAGCC-----------TAACGACT-CCATTCTGGTAGCAGA 1733
|||..|||.|.||| ||..|||| || |.|.|||.
BPUM_0186___y 1876 AAACGCTTCATGCCATTTGATATCATATTGACTGCC------GAAACAGG 1919
BSNT_06256___ 1734 GCATCCTGATCAAT--GCAAAGACATTGCGCCATTCGCGGCAGACTACCG 1781
|| |..||| ||||| || |.|||||.||..|...|||.|||..
BPUM_0186___y 1920 GC------AGGAATTAGCAAA-AC-TCGCGCCCTTTACAAAAGATTACAA 1961
BSNT_06256___ 1782 CATCATAGACGGCAAAACAACCGTGTATATTTGTGAAAACTTCGCCTGCC 1831
.|..||.||.||||||||.||||||||||||||||||||||.|..|||||
BPUM_0186___y 1962 AACAATTGATGGCAAAACCACCGTGTATATTTGTGAAAACTACAGCTGCC 2011
BSNT_06256___ 1832 AGCAGCCGA-CAACGAATATCGAAGAAGCCAT-CCACACGTTAATAAGCA 1879
..|||||.| ||.|| |||||||.|||||.|| .||||
BPUM_0186___y 2012 GCCAGCCAATCACCG-ATATCGACGAAGCAATGGCACA------------ 2048
BSNT_06256___ 1880 GCAGGGATTAA----------- 1890
|||.|
BPUM_0186___y 2049 ------ATTGAGTTTGTCATGA 2064
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