Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00345 and BPUM_0163

See Amino acid alignment / Visit BSNT_00345 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:15
# Commandline: needle
#    -asequence dna-align/BSNT_00345___ybbR.1.24716.seq
#    -bsequence dna-align/BPUM_0163___ybbR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00345___ybbR-BPUM_0163___ybbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00345___ybbR-BPUM_0163___ybbR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00345___ybbR
# 2: BPUM_0163___ybbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1552
# Identity:     993/1552 (64.0%)
# Similarity:   993/1552 (64.0%)
# Gaps:         239/1552 (15.4%)
# Score: 2978.5
# 
#
#=======================================

BSNT_00345___      1 ATGGATAA-ATTCTTAAACTACCGCTGGGCTGTGAAAATCATTGCTCTGC     49
                     |||||||| ||| ||.||..|.||||||||.||.||..|..||||..||.
BPUM_0163___y      1 ATGGATAAGATT-TTGAATAATCGCTGGGCCGTAAAGCTTCTTGCATTGG     49

BSNT_00345___     50 TTTTCGCGCTCTTGCTTTATGTGGCGGTTAA--CAGCAACCAAGCACCGA     97
                     |.|||||..|.|||||.||||..||.||.||  ||||  .|||||.||.|
BPUM_0163___y     50 TCTTCGCTTTATTGCTGTATGGTGCAGTCAATTCAGC--GCAAGCGCCCA     97

BSNT_00345___     98 CTCCGAAAAAACCGGGTGAATCTTTCTTTCCGACATCAACAACTGATGAA    147
                     |.|||||||||...||||||||.||.||.||.|||||.||.||.||||||
BPUM_0163___y     98 CGCCGAAAAAAATCGGTGAATCCTTTTTCCCAACATCGACGACAGATGAA    147

BSNT_00345___    148 GCAACTCTGACTGATATTCCGGTTAAAGCGTATTATGATGATGAAAATTA    197
                     |||||.||.||.||.|||||.||||||||||||||||||||.||.||.||
BPUM_0163___y    148 GCAACCCTAACAGACATTCCTGTTAAAGCGTATTATGATGACGAGAAGTA    197

BSNT_00345___    198 CGTCGTAACGGGTGTTCCGCAAACGGTTAATGTCACGATAAAAGGCTCGA    247
                     ||||||.||.|||||.||.|||||.||.|||||.|||||.|||||.||.|
BPUM_0163___y    198 CGTCGTTACTGGTGTGCCACAAACAGTCAATGTGACGATTAAAGGGTCAA    247

BSNT_00345___    248 CAAGCGCCGTGAAAAAGGCTCGGCAGACCAAAAACTTTGAAATATATGCT    297
                     |.||.||.|||||||..||..|.||.||.||||||||||||||||||||.
BPUM_0163___y    248 CGAGTGCAGTGAAAACAGCAAGACAAACAAAAAACTTTGAAATATATGCA    297

BSNT_00345___    298 GATATGGAACATTTGAAAACCGGCACACATAAGGTTGAGCTTAAGGCCAA    347
                     ||||||.|..||||....||.||.||.|||||.||.|||||.||.||.|.
BPUM_0163___y    298 GATATGCAGAATTTATCCACAGGTACTCATAAAGTGGAGCTGAAAGCAAG    347

BSNT_00345___    348 AAACGTGTCGGATGGGATGACAATCTCAATTAATCCGTCTGTTACGACAG    397
                     |.|.||.||..|.||..|.|||.|.||.||.|||||.|||||.|||||.|
BPUM_0163___y    348 AGATGTATCAAAAGGACTCACACTATCGATCAATCCATCTGTGACGACGG    397

BSNT_00345___    398 TGACCATTCAGGAACGGACGAC--CAAAAGTTTTCCCGTAGAAGTGGAGT    445
                     ||||.||.||.|||...||.||  ||.||  |||||.||.|||...||.|
BPUM_0163___y    398 TGACGATACAAGAAAAAACAACAGCAGAA--TTTCCTGTTGAAACTGAAT    445

BSNT_00345___    446 ACTACAA-CAAAAGCAAGATGAAAAAAGGCTATTCTCCGGAGCAGCCGAT    494
                     ..||.|| ||||| .||.||.|||.|.||||||||.||.||.||.||.||
BPUM_0163___y    446 TTTATAATCAAAA-TAAAATCAAAGATGGCTATTCGCCTGAACAACCTAT    494

BSNT_00345___    495 TGTCAGTCCGAAAAATGTGCAGA-TTACCGGATCGAAAAATGTCATCGAT    543
                     |||.|.|||.|||||.|| ||.| ||||.||.||.||..|.||.|||||.
BPUM_0163___y    495 TGTGAATCCAAAAAAAGT-CACAGTTACAGGTTCTAAGGACGTGATCGAC    543

BSNT_00345___    544 AATATTTCTCTTGTAAAAGCTTCAGTGAATTTGGAAAACGCAGAT--GAA    591
                     ||.||||||.|..|.|||||.|..|||||..|.||..|.|..|||  |.|
BPUM_0163___y    544 AAAATTTCTGTCATTAAAGCATTTGTGAACCTAGAGGATGTCGATCAGCA    593

BSNT_00345___    592 ACGATTGAAAAGGAAGCGAAAGTGACTGTCTATGATA-AAGACGGAAACG    640
                     |  ||||||||||||||||||.|.|||||.||||||| .|| |||.||.|
BPUM_0163___y    594 A--ATTGAAAAGGAAGCGAAACTCACTGTGTATGATAGCAG-CGGGAATG    640

BSNT_00345___    641 CGCTTCCTGTCGACGTGGAG-CCCTCGGTCATCAAGATTACCGTTCCGGT    689
                     .|||.||.||||| .|..|| ||.||.||..|.||.|||||.|||||..|
BPUM_0163___y    641 AGCTGCCAGTCGA-ATTAAGTCCGTCTGTGGTAAATATTACAGTTCCTAT    689

BSNT_00345___    690 GACAAGTCCGAGTAAAAAAGTGCCCTTTAAAATTGAACGGACAGGAAGCC    739
                     ..|||||||.||.|||||.||.||.||||||||.||..||||.||.||..
BPUM_0163___y    690 CTCAAGTCCAAGCAAAAAGGTTCCGTTTAAAATAGAGAGGACTGGCAGTT    739

BSNT_00345___    740 TTCCTGACGGTGTCAGCATAGCGAATATTGAATCCAGCCCCAGTGAAGTA    789
                     |.||.||.||..||||.||..|.|.||||||..|.|||||.|||||.||.
BPUM_0163___y    740 TGCCGGATGGGATCAGTATCTCAAGTATTGAGACAAGCCCGAGTGAGGTC    789

BSNT_00345___    790 ACGGTTTACGGCTCACAGGATGTGTTGGATTCTCTTGAATTTATTGACGG    839
                     ||.||.||||||||.||..|.|||.|.|||||||||||.||||||||.||
BPUM_0163___y    790 ACAGTGTACGGCTCTCAAAAAGTGCTTGATTCTCTTGATTTTATTGATGG    839

BSNT_00345___    840 CGTCAGCCTAGATTTAAGTAAAATTAACAAGGATTCCGATATCGAGGCAG    889
                     |||||..||.||.||||||||.||.||..|.|||.|.||.||.||.||.|
BPUM_0163___y    840 CGTCAAGCTGGACTTAAGTAAGATCAAAGATGATACGGAGATTGATGCCG    889

BSNT_00345___    890 ATATTCTGCTTCCTGACGGTGTCAAAAAAATCTCACCGTCAAAGGTGACT    939
                     ||||||...|.||.||.|||||.|||||..|.||.||...||.|||||  
BPUM_0163___y    890 ATATTCCCATACCAGATGGTGTGAAAAAGGTATCGCCCGAAACGGTGA--    937

BSNT_00345___    940 TTGCATATAGAAGTCGATAGTGA----------AGCG---GATCAGAAGT    976
                             |||  || |.|||||          ||||   ||..|.|||.
BPUM_0163___y    938 --------AGA--TC-AAAGTGAAGGTTGCAACAGCGCAAGAAAAAAAGA    976

BSNT_00345___    977 TCGAGAATGTCC------CTATCAAGACTGTAGGGCTGAGC----AGCTC   1016
                     ||||.|||||||      |||||      |||||.||||||    |.|||
BPUM_0163___y    977 TCGATAATGTCCCAATTTCTATC------GTAGGTCTGAGCAAGGATCTC   1020

BSNT_00345___   1017 ACAAAACATTGAAT----------ATCTTGATCCTGAATCACAAGCGATA   1056
                     ||    |..|||||          |||||    |||              
BPUM_0163___y   1021 AC----CTCTGAATTTGTGAGCCCATCTT----CTG--------------   1048

BSNT_00345___   1057 GACG--------TAACGGCTAAAGGCTC------TCCCGCGAAT-ATAAA   1091
                     ||||        ||||.||.|||||.||      |   ||||.| ||   
BPUM_0163___y   1049 GACGGCTCACGTTAACAGCAAAAGGATCAAAGAGT---GCGATTGAT---   1092

BSNT_00345___   1092 AAAACTGAAAAAA----TCAGATATTGAATTGTATGTGAATGTTTCAGAT   1137
                      |||||    |||    ||||||.|||||...|||.|.|||||       
BPUM_0163___y   1093 -AAACT----AAAGGCTTCAGATGTTGAAGCCTATATCAATGT-------   1130

BSNT_00345___   1138 TTAGAGGACGGGGA---GCAT--AG-----CGTGAAG-----CTTGAAGT   1172
                             ||||||   |.||  ||     |.|||||     .||.||||
BPUM_0163___y   1131 --------CGGGGACTTGAATGAAGGAACACATGAAGTCACAGTTCAAGT   1172

BSNT_00345___   1173 GAACGGGCCACAGAATGTAACCTGGTCCTTGGGGCGGAAAAACGCCAAAA   1222
                     |||.||.||.||.|||||.||.|||.|.||...|.|...|||.|.||||.
BPUM_0163___y   1173 GAATGGTCCTCAAAATGTGACGTGGACATTATCGAGATCAAAGGTCAAAG   1222

BSNT_00345___   1223 TCAAGCTGACGTCT----------AAGAAAAGCAATACATCAACGAATGA   1262
                     |.||.|||||.|||          ||||..|||.| .|.||.||.|||||
BPUM_0163___y   1223 TGAAACTGACCTCTACTGAGACAGAAGATCAGCCA-GCGTCTACAAATGA   1271

BSNT_00345___   1263 T-AACAGCAGCAATACATCAGGGAACCAGGATGACACAGATAA--ACAAA   1309
                     | |..||.|||.|| |.||         .||||||   |||.|  |.|||
BPUM_0163___y   1272 TCAGAAGAAGCCAT-CTTC---------TGATGAC---GATGATCAGAAA   1308

BSNT_00345___   1310 CAAATGA-TCAAAAGAACAATCAGCAAG-AAGATA---CAAAGAACACTG   1354
                     .|.|.|| |  ||||||.||||  ||.| ||||||   |||||||     
BPUM_0163___y   1309 GAGAAGAGT--AAAGAAGAATC--CACGCAAGATAAAGCAAAGAA-----   1349

BSNT_00345___   1355 ATAAAAACAACAACGATCAAA-ACCAAGACGAAAATAAAGATCAAAACCA   1403
                       |.||.|||     .||||| ||  || ||        |||||||  .|
BPUM_0163___y   1350 --AGAATCAA-----GTCAAAGAC--AG-CG--------GATCAAA--GA   1379

BSNT_00345___   1404 AGATCAGGATGAGGATGAATCCACTGCGAATTCACAATCCTCATCGGAAT   1453
                     ||||.|..|.|||||.|||      |||         |||||.|  ||  
BPUM_0163___y   1380 AGATAAAAAAGAGGACGAA------GCG---------TCCTCTT--GA--   1410

BSNT_00345___   1454 AA   1455
                       
BPUM_0163___y   1410 --   1410


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