Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00345 and BPUM_0163
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:15
# Commandline: needle
# -asequence dna-align/BSNT_00345___ybbR.1.24716.seq
# -bsequence dna-align/BPUM_0163___ybbR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00345___ybbR-BPUM_0163___ybbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00345___ybbR-BPUM_0163___ybbR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00345___ybbR
# 2: BPUM_0163___ybbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1552
# Identity: 993/1552 (64.0%)
# Similarity: 993/1552 (64.0%)
# Gaps: 239/1552 (15.4%)
# Score: 2978.5
#
#
#=======================================
BSNT_00345___ 1 ATGGATAA-ATTCTTAAACTACCGCTGGGCTGTGAAAATCATTGCTCTGC 49
|||||||| ||| ||.||..|.||||||||.||.||..|..||||..||.
BPUM_0163___y 1 ATGGATAAGATT-TTGAATAATCGCTGGGCCGTAAAGCTTCTTGCATTGG 49
BSNT_00345___ 50 TTTTCGCGCTCTTGCTTTATGTGGCGGTTAA--CAGCAACCAAGCACCGA 97
|.|||||..|.|||||.||||..||.||.|| |||| .|||||.||.|
BPUM_0163___y 50 TCTTCGCTTTATTGCTGTATGGTGCAGTCAATTCAGC--GCAAGCGCCCA 97
BSNT_00345___ 98 CTCCGAAAAAACCGGGTGAATCTTTCTTTCCGACATCAACAACTGATGAA 147
|.|||||||||...||||||||.||.||.||.|||||.||.||.||||||
BPUM_0163___y 98 CGCCGAAAAAAATCGGTGAATCCTTTTTCCCAACATCGACGACAGATGAA 147
BSNT_00345___ 148 GCAACTCTGACTGATATTCCGGTTAAAGCGTATTATGATGATGAAAATTA 197
|||||.||.||.||.|||||.||||||||||||||||||||.||.||.||
BPUM_0163___y 148 GCAACCCTAACAGACATTCCTGTTAAAGCGTATTATGATGACGAGAAGTA 197
BSNT_00345___ 198 CGTCGTAACGGGTGTTCCGCAAACGGTTAATGTCACGATAAAAGGCTCGA 247
||||||.||.|||||.||.|||||.||.|||||.|||||.|||||.||.|
BPUM_0163___y 198 CGTCGTTACTGGTGTGCCACAAACAGTCAATGTGACGATTAAAGGGTCAA 247
BSNT_00345___ 248 CAAGCGCCGTGAAAAAGGCTCGGCAGACCAAAAACTTTGAAATATATGCT 297
|.||.||.|||||||..||..|.||.||.||||||||||||||||||||.
BPUM_0163___y 248 CGAGTGCAGTGAAAACAGCAAGACAAACAAAAAACTTTGAAATATATGCA 297
BSNT_00345___ 298 GATATGGAACATTTGAAAACCGGCACACATAAGGTTGAGCTTAAGGCCAA 347
||||||.|..||||....||.||.||.|||||.||.|||||.||.||.|.
BPUM_0163___y 298 GATATGCAGAATTTATCCACAGGTACTCATAAAGTGGAGCTGAAAGCAAG 347
BSNT_00345___ 348 AAACGTGTCGGATGGGATGACAATCTCAATTAATCCGTCTGTTACGACAG 397
|.|.||.||..|.||..|.|||.|.||.||.|||||.|||||.|||||.|
BPUM_0163___y 348 AGATGTATCAAAAGGACTCACACTATCGATCAATCCATCTGTGACGACGG 397
BSNT_00345___ 398 TGACCATTCAGGAACGGACGAC--CAAAAGTTTTCCCGTAGAAGTGGAGT 445
||||.||.||.|||...||.|| ||.|| |||||.||.|||...||.|
BPUM_0163___y 398 TGACGATACAAGAAAAAACAACAGCAGAA--TTTCCTGTTGAAACTGAAT 445
BSNT_00345___ 446 ACTACAA-CAAAAGCAAGATGAAAAAAGGCTATTCTCCGGAGCAGCCGAT 494
..||.|| ||||| .||.||.|||.|.||||||||.||.||.||.||.||
BPUM_0163___y 446 TTTATAATCAAAA-TAAAATCAAAGATGGCTATTCGCCTGAACAACCTAT 494
BSNT_00345___ 495 TGTCAGTCCGAAAAATGTGCAGA-TTACCGGATCGAAAAATGTCATCGAT 543
|||.|.|||.|||||.|| ||.| ||||.||.||.||..|.||.|||||.
BPUM_0163___y 495 TGTGAATCCAAAAAAAGT-CACAGTTACAGGTTCTAAGGACGTGATCGAC 543
BSNT_00345___ 544 AATATTTCTCTTGTAAAAGCTTCAGTGAATTTGGAAAACGCAGAT--GAA 591
||.||||||.|..|.|||||.|..|||||..|.||..|.|..||| |.|
BPUM_0163___y 544 AAAATTTCTGTCATTAAAGCATTTGTGAACCTAGAGGATGTCGATCAGCA 593
BSNT_00345___ 592 ACGATTGAAAAGGAAGCGAAAGTGACTGTCTATGATA-AAGACGGAAACG 640
| ||||||||||||||||||.|.|||||.||||||| .|| |||.||.|
BPUM_0163___y 594 A--ATTGAAAAGGAAGCGAAACTCACTGTGTATGATAGCAG-CGGGAATG 640
BSNT_00345___ 641 CGCTTCCTGTCGACGTGGAG-CCCTCGGTCATCAAGATTACCGTTCCGGT 689
.|||.||.||||| .|..|| ||.||.||..|.||.|||||.|||||..|
BPUM_0163___y 641 AGCTGCCAGTCGA-ATTAAGTCCGTCTGTGGTAAATATTACAGTTCCTAT 689
BSNT_00345___ 690 GACAAGTCCGAGTAAAAAAGTGCCCTTTAAAATTGAACGGACAGGAAGCC 739
..|||||||.||.|||||.||.||.||||||||.||..||||.||.||..
BPUM_0163___y 690 CTCAAGTCCAAGCAAAAAGGTTCCGTTTAAAATAGAGAGGACTGGCAGTT 739
BSNT_00345___ 740 TTCCTGACGGTGTCAGCATAGCGAATATTGAATCCAGCCCCAGTGAAGTA 789
|.||.||.||..||||.||..|.|.||||||..|.|||||.|||||.||.
BPUM_0163___y 740 TGCCGGATGGGATCAGTATCTCAAGTATTGAGACAAGCCCGAGTGAGGTC 789
BSNT_00345___ 790 ACGGTTTACGGCTCACAGGATGTGTTGGATTCTCTTGAATTTATTGACGG 839
||.||.||||||||.||..|.|||.|.|||||||||||.||||||||.||
BPUM_0163___y 790 ACAGTGTACGGCTCTCAAAAAGTGCTTGATTCTCTTGATTTTATTGATGG 839
BSNT_00345___ 840 CGTCAGCCTAGATTTAAGTAAAATTAACAAGGATTCCGATATCGAGGCAG 889
|||||..||.||.||||||||.||.||..|.|||.|.||.||.||.||.|
BPUM_0163___y 840 CGTCAAGCTGGACTTAAGTAAGATCAAAGATGATACGGAGATTGATGCCG 889
BSNT_00345___ 890 ATATTCTGCTTCCTGACGGTGTCAAAAAAATCTCACCGTCAAAGGTGACT 939
||||||...|.||.||.|||||.|||||..|.||.||...||.|||||
BPUM_0163___y 890 ATATTCCCATACCAGATGGTGTGAAAAAGGTATCGCCCGAAACGGTGA-- 937
BSNT_00345___ 940 TTGCATATAGAAGTCGATAGTGA----------AGCG---GATCAGAAGT 976
||| || |.||||| |||| ||..|.|||.
BPUM_0163___y 938 --------AGA--TC-AAAGTGAAGGTTGCAACAGCGCAAGAAAAAAAGA 976
BSNT_00345___ 977 TCGAGAATGTCC------CTATCAAGACTGTAGGGCTGAGC----AGCTC 1016
||||.||||||| ||||| |||||.|||||| |.|||
BPUM_0163___y 977 TCGATAATGTCCCAATTTCTATC------GTAGGTCTGAGCAAGGATCTC 1020
BSNT_00345___ 1017 ACAAAACATTGAAT----------ATCTTGATCCTGAATCACAAGCGATA 1056
|| |..||||| ||||| |||
BPUM_0163___y 1021 AC----CTCTGAATTTGTGAGCCCATCTT----CTG-------------- 1048
BSNT_00345___ 1057 GACG--------TAACGGCTAAAGGCTC------TCCCGCGAAT-ATAAA 1091
|||| ||||.||.|||||.|| | ||||.| ||
BPUM_0163___y 1049 GACGGCTCACGTTAACAGCAAAAGGATCAAAGAGT---GCGATTGAT--- 1092
BSNT_00345___ 1092 AAAACTGAAAAAA----TCAGATATTGAATTGTATGTGAATGTTTCAGAT 1137
||||| ||| ||||||.|||||...|||.|.|||||
BPUM_0163___y 1093 -AAACT----AAAGGCTTCAGATGTTGAAGCCTATATCAATGT------- 1130
BSNT_00345___ 1138 TTAGAGGACGGGGA---GCAT--AG-----CGTGAAG-----CTTGAAGT 1172
|||||| |.|| || |.||||| .||.||||
BPUM_0163___y 1131 --------CGGGGACTTGAATGAAGGAACACATGAAGTCACAGTTCAAGT 1172
BSNT_00345___ 1173 GAACGGGCCACAGAATGTAACCTGGTCCTTGGGGCGGAAAAACGCCAAAA 1222
|||.||.||.||.|||||.||.|||.|.||...|.|...|||.|.||||.
BPUM_0163___y 1173 GAATGGTCCTCAAAATGTGACGTGGACATTATCGAGATCAAAGGTCAAAG 1222
BSNT_00345___ 1223 TCAAGCTGACGTCT----------AAGAAAAGCAATACATCAACGAATGA 1262
|.||.|||||.||| ||||..|||.| .|.||.||.|||||
BPUM_0163___y 1223 TGAAACTGACCTCTACTGAGACAGAAGATCAGCCA-GCGTCTACAAATGA 1271
BSNT_00345___ 1263 T-AACAGCAGCAATACATCAGGGAACCAGGATGACACAGATAA--ACAAA 1309
| |..||.|||.|| |.|| .|||||| |||.| |.|||
BPUM_0163___y 1272 TCAGAAGAAGCCAT-CTTC---------TGATGAC---GATGATCAGAAA 1308
BSNT_00345___ 1310 CAAATGA-TCAAAAGAACAATCAGCAAG-AAGATA---CAAAGAACACTG 1354
.|.|.|| | ||||||.|||| ||.| |||||| |||||||
BPUM_0163___y 1309 GAGAAGAGT--AAAGAAGAATC--CACGCAAGATAAAGCAAAGAA----- 1349
BSNT_00345___ 1355 ATAAAAACAACAACGATCAAA-ACCAAGACGAAAATAAAGATCAAAACCA 1403
|.||.||| .||||| || || || ||||||| .|
BPUM_0163___y 1350 --AGAATCAA-----GTCAAAGAC--AG-CG--------GATCAAA--GA 1379
BSNT_00345___ 1404 AGATCAGGATGAGGATGAATCCACTGCGAATTCACAATCCTCATCGGAAT 1453
||||.|..|.|||||.||| ||| |||||.| ||
BPUM_0163___y 1380 AGATAAAAAAGAGGACGAA------GCG---------TCCTCTT--GA-- 1410
BSNT_00345___ 1454 AA 1455
BPUM_0163___y 1410 -- 1410
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