Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00342 and BPUM_0160

See Amino acid alignment / Visit BSNT_00342 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:15
# Commandline: needle
#    -asequence dna-align/BSNT_00342___sigW.1.24716.seq
#    -bsequence dna-align/BPUM_0160___sigW.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00342___sigW-BPUM_0160___sigW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00342___sigW-BPUM_0160___sigW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00342___sigW
# 2: BPUM_0160___sigW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 589
# Identity:     443/589 (75.2%)
# Similarity:   443/589 (75.2%)
# Gaps:          26/589 ( 4.4%)
# Score: 1715.0
# 
#
#=======================================

BSNT_00342___      1 ------------------------ATGGAAATGATGATTAAAAAAAGAAT     26
                                             |||||.|..|||||||||||.|||||
BPUM_0160___s      1 GTGAAGGCAGAGGTTGAATATACTATGGACACAATGATTAAAAAGAGAAT     50

BSNT_00342___     27 TAAACAAGTCAAAAAAGGCGACCAGAATGCATTTGCGGACATCGTAGATA     76
                     |||.|||.|.|||||||||||||||||.||||||||.|||||||||||..
BPUM_0160___s     51 TAAGCAATTGAAAAAAGGCGACCAGAACGCATTTGCAGACATCGTAGACC    100

BSNT_00342___     77 TTTACAAAGATAAAATTTATCAGCTTTGCTACCGTATGCTTGGCAATGTG    126
                     |.||.|||||.||||||||||||||.|||||||||||||||||.||||..
BPUM_0160___s    101 TGTATAAAGACAAAATTTATCAGCTGTGCTACCGTATGCTTGGGAATGCA    150

BSNT_00342___    127 CATGAGGCGGAGGATATTGCACAGGAAGCTTTCATCAGAGCGTACGTTAA    176
                     ||.||.||.||||||||.||||||||.||.||.||..|.||.||.||.||
BPUM_0160___s    151 CACGAAGCAGAGGATATCGCACAGGAGGCGTTTATTCGTGCCTATGTGAA    200

BSNT_00342___    177 TATCGACAGTTTTGATATTAACCGGAAATTTTCAACTTGGCTTTATCGAA    226
                     |||.||.||.||||||.|.||.||.||.|||||.||.|||||.||.||.|
BPUM_0160___s    201 TATTGAGAGCTTTGATGTGAATCGTAAGTTTTCTACGTGGCTGTACCGCA    250

BSNT_00342___    227 TCGCGACCAATTTGACCATTGACCGCATTCGCAAAAAGAAGCCGGATTAT    276
                     |.||.|||||..|||||||.||.||.|||||||||||.||||||||||||
BPUM_0160___s    251 TTGCAACCAACCTGACCATCGATCGTATTCGCAAAAAAAAGCCGGATTAT    300

BSNT_00342___    277 TACCTCGATGCAGAGGTGGCTGGTACGGAAGGCTTGACCATGTATTCTCA    326
                     ||..|.||||||||||||||.||.||.|||||.||.|..|||||||||||
BPUM_0160___s    301 TATTTAGATGCAGAGGTGGCAGGAACAGAAGGATTAAATATGTATTCTCA    350

BSNT_00342___    327 AATCGCCGCAGATGGTGTTTTGCCTGAAGATGCAGTTGTGTCGCTGGAGC    376
                     |||.||.||.|||||..|||||||.||.||.|..||.|||||.||.||..
BPUM_0160___s    351 AATTGCTGCTGATGGCATTTTGCCAGAGGAAGAGGTGGTGTCTCTTGAAT    400

BSNT_00342___    377 TCTCAAACACGATACAGCAGAAAATTTTAAAGCTT-CCTGACAAATACAG    425
                     |.||.|..||.||.|||||.||||||.| |||.|| ||.||.|||||..|
BPUM_0160___s    401 TATCGAGTACCATTCAGCAAAAAATTCT-AAGATTACCCGATAAATATCG    449

BSNT_00342___    426 AACAGTCATCGTATTAAAGTATATTGACGAACTCTCATTAATTGAAATCG    475
                     ..|.|||||||||||||||||||||||.||||||||.||||..|||||..
BPUM_0160___s    450 TTCGGTCATCGTATTAAAGTATATTGATGAACTCTCGTTAAAAGAAATTA    499

BSNT_00342___    476 GGGAGATTCTAAACATTCCTGTGGGGACTGTGAAAACGCGGATTCACAGA    525
                     |.|||||.|||||.||.||.||.||.||.|||||||||.|.||.|||||.
BPUM_0160___s    500 GTGAGATCCTAAATATACCAGTTGGTACGGTGAAAACGAGAATACACAGG    549

BSNT_00342___    526 GGCAGAGAGGCTCTTAGAAAACAATTAAGGGATCTTTAA    564
                     ||.|||||||||||..|.|||||.||.||.||.||||.|
BPUM_0160___s    550 GGTAGAGAGGCTCTCCGGAAACAGTTGAGAGACCTTTGA    588


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