Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00320 and BPUM_0156
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:14
# Commandline: needle
# -asequence dna-align/BSNT_00320___ybbF.1.24716.seq
# -bsequence dna-align/BPUM_0156___ybbF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00320___ybbF-BPUM_0156___ybbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00320___ybbF-BPUM_0156___ybbF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00320___ybbF
# 2: BPUM_0156___ybbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1446
# Identity: 962/1446 (66.5%)
# Similarity: 962/1446 (66.5%)
# Gaps: 150/1446 (10.4%)
# Score: 3050.5
#
#
#=======================================
BSNT_00320___ 1 ATGAG----CAAA-GAAAATAACTACCATCATCTCGCACAGAAA---ATC 42
||||| |||| |||| ||.||.||..|.|| |||| |||
BPUM_0156___y 1 ATGAGTCATCAAACGAAA-----TATCAGCAGTTGGC---GAAAGACATC 42
BSNT_00320___ 43 CTTGAGCTATGCGGAG-----GAAAATCCAATATTTCTTCATATACGCAT 87
|||...||.||.||.| ||| ||.||.|.|||..||||.|||
BPUM_0156___y 43 CTTTCTCTCTGTGGTGGTTCTGAA-----AACATCTATTCCCATACACAT 87
BSNT_00320___ 88 TGCATGACACGCCTGCGCATTACGCC---TTACGATGAAAGCAA------ 128
||.||||||||.||.||.|||||.|| |.||.||||| |||
BPUM_0156___y 88 TGTATGACACGTCTCCGAATTACACCGATTGACAATGAA--CAAGTTGAC 135
BSNT_00320___ 129 AGCAGATGC--TCAGGGTTTAAGAAAGCTTGACGGCGT-ATTGGGGGTCG 175
|.|| |||| ||| ||||| ||.||.||||| ||| ||.||||
BPUM_0156___y 136 ATCA-ATGCAATCA------AAGAA--CTCGATGGCGTCATT-GGAGTCG 175
BSNT_00320___ 176 TTGAAGCTGAAACCTTACAAATTATCCTCGGCACAGGAGTCGTCAATCAT 225
||||.||.|||||..|||||||.|||.|.||.||.||.||.|||||.||.
BPUM_0156___y 176 TTGAGGCAGAAACGCTACAAATCATCTTAGGTACTGGTGTTGTCAACCAA 225
BSNT_00320___ 226 GT--------------TACAGCTGCTTTCTCAAA--------GCTCGTGT 253
|| .|||.||||| ||| ||||.|.|
BPUM_0156___y 226 GTATCAAGTGCATTTGAACAACTGCT-----AAATGCCTCTGGCTCTTAT 270
BSNT_00320___ 254 CAGCAGAAGAAGGTGCCGATGT---CAAAGAAGCTGCGGCCAAA-----A 295
|||.| |||.||||| .|||| |
BPUM_0156___y 271 -----------------GATTTAAACAACGAAGC-----ACAAAAAAACA 298
BSNT_00320___ 296 AGAAAGCCGATATCAATCGAAAAAACGCCACTCCTTTTAAACTTTTCTTA 345
||.||||| ||.||| |.|||.|||..|||.||.||.||.||.||||||
BPUM_0156___y 299 AGCAAGCC-ATTTCA--CAAAAGAACCGCACACCGTTCAAGCTGTTCTTA 345
BSNT_00320___ 346 CGTAAAATTGCCAGCATTTTTATCCCTCTTATTCCCGCTCTAGTCGCTTC 395
||...|||||||||||||||.||.|||.|||||||.||.||.||.||.||
BPUM_0156___y 346 CGACGAATTGCCAGCATTTTCATTCCTATTATTCCAGCACTCGTTGCATC 395
BSNT_00320___ 396 CGGTTTAATTACTGGGATTACCAAAGCAATTATTCAAGCAGGCTGGCTCT 445
.|||.|.|||||.||||||||.||||||||..|.||||||||||||||..
BPUM_0156___y 396 AGGTCTTATTACAGGGATTACAAAAGCAATCGTGCAAGCAGGCTGGCTTG 445
BSNT_00320___ 446 CTGCAGACTCACAAATTGCGGTTATCCTGACAGTCATCGGATCAGGGCTG 495
.||.|.|.||.|||...|||.|.||..|.||.||.||.||.|||||.|||
BPUM_0156___y 446 ATGAAAAATCTCAAGCAGCGATCATTTTAACCGTTATTGGTTCAGGTCTG 495
BSNT_00320___ 496 TTCACTTATCTCGGCATTCTCGTCGGTATTAACGCTTCGAAAGAATTTGG 545
|||.||||||||||.||..|.|||||.|..|||||..|.||.||.||.||
BPUM_0156___y 496 TTCGCTTATCTCGGTATATTAGTCGGAACAAACGCCGCAAAGGAGTTCGG 545
BSNT_00320___ 546 CGGGACACCCGCACTTGGGGCTTTGGCCGGGATCTTGATTATCAATCCGG 595
.||..|.||.|||.|.||.||.||.||.||||||.|.|||||.|||||.|
BPUM_0156___y 546 GGGCTCTCCTGCATTAGGCGCATTAGCTGGGATCCTCATTATTAATCCAG 595
BSNT_00320___ 596 AGATCGCAAAAATCAGTTTATTTGG-AGAAGAGCTTCTCCCGGGCAGGGG 644
....||||.|.||.|...||||||| |.|| |..||||.||.|||||.||
BPUM_0156___y 596 CCTCCGCAGACATTATGCTATTTGGCACAA-ATATTCTACCAGGCAGAGG 644
BSNT_00320___ 645 AGGTCTGATCGGCGTCCTTTTCGCAGCCATATTCATTG--CTTACACCG- 691
.||.||.|||||.||.||..|.||.|||||.||.||.| ||| |
BPUM_0156___y 645 CGGACTTATCGGTGTTCTCCTAGCCGCCATTTTTATGGCACTT-----GT 689
BSNT_00320___ 692 ---AACAATTTATTC-GCCGTTTTATTCCTCAATCACTCGATATCATTGT 737
||||| .|.|| |.||.|||.|.||.||||||||.||||||||.||
BPUM_0156___y 690 GGAAACAA--GAATCAGACGCTTTGTCCCGCAATCACTTGATATCATCGT 737
BSNT_00320___ 738 CACACCCACCGTTTCACTGTTAATCACCGGAATCGTAACGTATGTCGTAT 787
||||||.|||.|..||||..|.||.||.||.||..|.|||||.||.||.|
BPUM_0156___y 738 CACACCAACCATCACACTACTTATTACAGGCATTTTTACGTACGTTGTCT 787
BSNT_00320___ 788 TTATGCCTTTAGGCGGATTCATCTCTGATGCTATTACATCCGG----CCT 833
|.|||||..|.||||||||.||.||.|||||.|||||.||.|| .||
BPUM_0156___y 788 TCATGCCAGTCGGCGGATTTATATCGGATGCCATTACCTCAGGATTAACT 837
BSNT_00320___ 834 TCTGTCCATCCTGGACATCGGCGGCATCGCTGCAGGCTTTATTCTGGGCG 883
|.||.|| |..|.||.|||||||||...||.||.|||.||||.||.|
BPUM_0156___y 838 --TATCTAT--TAAATATGGGCGGCATCTTCGCTGGATTTGTTCTTGGTG 883
BSNT_00320___ 884 CAACCTTCCTTCCTCTCGTCGTAACCGGACTGCATCAAGGCTTGACGCCT 933
|.|||||||||||.||.||.|||||.|||||.||.|||||..||||.||.
BPUM_0156___y 884 CGACCTTCCTTCCGCTTGTTGTAACAGGACTTCACCAAGGACTGACACCG 933
BSNT_00320___ 934 GTGCACATGGAACTGATCAATTCAATTGGCAATGATCCTCTGCTCCCTAT 983
.|.||.||||||||.||||||||.||.||..||||.||.||..|.||.||
BPUM_0156___y 934 ATTCATATGGAACTCATCAATTCCATAGGAGATGACCCGCTCTTGCCGAT 983
BSNT_00320___ 984 TTTGGCTATGGGAGGTGCAGGACAGGTAGGCGCGGCCTTTGCCGTTTTCG 1033
|.|.||||||||.|||||||||||||||||.|||||.||.|||.|||...
BPUM_0156___y 984 TCTCGCTATGGGCGGTGCAGGACAGGTAGGTGCGGCATTCGCCATTTATA 1033
BSNT_00320___ 1034 TGAAGACGAAAAAAACAACACTGAGGAAAGCAATCGCCGGCGGGCTTCCA 1083
||||.||.|||||.|.||.|||.|..|.|||.|||||.||.||.||||||
BPUM_0156___y 1034 TGAAAACAAAAAAGAAAAAACTCAAAAGAGCCATCGCAGGTGGACTTCCA 1083
BSNT_00320___ 1084 TCGGGACTGCTCGGCATTGGTGAACCGCTTATTTTCGGAGTCACGCTGCC 1133
|||||..||||.||||||||||||||.||.||||||||.|||||.||.||
BPUM_0156___y 1084 TCGGGGATGCTTGGCATTGGTGAACCACTCATTTTCGGTGTCACACTCCC 1133
BSNT_00320___ 1134 GCTTGGCCGTCCGTTTTTAACAGCATGTTTAGGAGCTGGAATCGGTGGTG 1183
|||.||.||.||.|||.|.||.||.|||.|.||.||||||||.||.||||
BPUM_0156___y 1134 GCTGGGACGACCATTTCTCACCGCTTGTCTTGGCGCTGGAATTGGCGGTG 1183
BSNT_00320___ 1184 CCTTTCAAGCGTATTTTCAAGTAGCCACCATTGCGATTGGTGTCTCCGGA 1233
|.||||||||.||.||.|||.|.||.||.|..|||||||||||.||.||.
BPUM_0156___y 1184 CATTTCAAGCCTACTTCCAAATTGCAACGAAGGCGATTGGTGTATCAGGT 1233
BSNT_00320___ 1234 CTGCCGCTTTCCTTTCTAGTCCTGCCTTCGCAAATCA-----TCCTGTAT 1278
||.||..|..|||||.|.||.| .|.||.|||| |.||.||.
BPUM_0156___y 1234 CTCCCATTAACCTTTATTGTTC-----ACACACATCAAATGCTTCTTTAC 1278
BSNT_00320___ 1279 ATCGTTGGGCTCTTTATTTCCTACGCGGCCGGCTTTTTATTGACCTATGC 1328
.|..|.||.|||||||||.|.||.|..||.||.|||.|.||.||.||...
BPUM_0156___y 1279 TTAATCGGACTCTTTATTGCTTATGTCGCTGGATTTATTTTCACATACTT 1328
BSNT_00320___ 1329 ATTCGGATATAAAGATGAAATGGCTTCTCAGTTCGATTAA------ 1368
|||.||.|...|.|||||.||||||..|.|.||.||..||
BPUM_0156___y 1329 ATTTGGTTTCCATGATGATATGGCTGTTGAATTTGAGGAAAAATAA 1374
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