Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00319 and BPUM_0155
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:14
# Commandline: needle
# -asequence dna-align/BSNT_00319___ybbE.1.24716.seq
# -bsequence dna-align/BPUM_0155___ybbE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00319___ybbE-BPUM_0155___ybbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00319___ybbE-BPUM_0155___ybbE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00319___ybbE
# 2: BPUM_0155___ybbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1464
# Identity: 898/1464 (61.3%)
# Similarity: 898/1464 (61.3%)
# Gaps: 246/1464 (16.8%)
# Score: 2526.5
#
#
#=======================================
BSNT_00319___ 1 GTGAAAACAAAGAC--ACTGTTCATATTCAG--TGC-CA---TTTTAACC 42
.|| ||.|||.|| .||.||.|||...|| ||| || ||||
BPUM_0155___y 1 TTG--AAGAAATACTTTCTCTTAATAACAAGTCTGCTCATGCTTTT---- 44
BSNT_00319___ 43 CTATCGATATTCGCGC-CAAA----TGAAAC------------------- 68
|.||| |.|..|| |||| ||.|||
BPUM_0155___y 45 ---TGGAT-TACCAGCACAAACATTTGCAACTAGCTCCCATCTTGTATCG 90
BSNT_00319___ 69 -CTTCG-CACAAACAGCAGACAACTTGGTTGAGCC----GAAAACC---- 108
|||.| |..|||||||| || |||.|||
BPUM_0155___y 91 TCTTTGTCTAAAACAGCA---------------CCTGAAGAATACCCCGT 125
BSNT_00319___ 109 ----ATAAATGCAGAAA----CTGCACAA------TTCTCGACGAAGAAG 144
|.|||.||| ||| |.|.|||| ||.||..|.|.|.||
BPUM_0155___y 126 CTTAAAAAAGGCA-AAACGACCGGAACAAGTTGGTTTTTCTTCCAGGCAG 174
BSNT_00319___ 145 CTAAAGAAGGTAGATCAGATGATAGAACGGGATATTGCAGCAGGATTTCC 194
||.|.||||||.|||||.|||||..||..|||.||...||||||||||||
BPUM_0155___y 175 CTTAGGAAGGTTGATCACATGATTCAAAAGGACATCAAAGCAGGATTTCC 224
BSNT_00319___ 195 AGGCGCCGTTCTTGTGGTGGTGAAGGATGGACGCAT----CATAAAAAAA 240
.||.||||..||..|..|..|.||.||.|||...|| |||.|||
BPUM_0155___y 225 TGGAGCCGCACTCATCATTATCAAAGACGGAAAAATCGTCCATCAAA--- 271
BSNT_00319___ 241 GAAGCATACGGCTACAGTAAAAAGTACGAAGGGT----CAGAACTGCTGC 286
||||.||.||||||||..||||.||| ||.||| |||||||
BPUM_0155___y 272 -AAGCCTATGGCTACAGGCAAAAATAC-AACGGTACAACAGAACT----- 314
BSNT_00319___ 287 GCC--GTCC-----GGCCAAAATGAAAACCCGCACGATGTTTGACTTAGC 329
| .||| | ||||||||||.....||.|||||.||||||||
BPUM_0155___y 315 --CAAATCCTATAAG---AAAATGAAAAAAAATACAATGTTCGACTTAGC 359
BSNT_00319___ 330 CTCAAATACAAAAATGTACGCAACAAATTTTGTATTGCAGCGCTTAGTCA 379
.||.||.||.||||||||.||.|||||.|.| ||.|||
BPUM_0155___y 360 ATCCAACACCAAAATGTATGCGACAAACTAT--------GCCCTT----- 396
BSNT_00319___ 380 GCCAAGGAAAACTTGACGTCTATG---AAAAAGTTTCTG----------- 415
|| ||||||| ||||||| |||||.|...||
BPUM_0155___y 397 --CA---AAAACTT---GTCTATGAGAAAAAACTAGATGTGAACGAAAAA 438
BSNT_00319___ 416 --------CATATTTGCCGGGTTTCAAGGATCAGCCGGGTGACCTCA--- 454
||| ..||||.|.|||.||.|||.|.||.|.|| ||
BPUM_0155___y 439 ATACAAGCCAT-CCTGCCAGATTTTAAAGATGAACCAGATG----CAAAG 483
BSNT_00319___ 455 -TAAAAGGAAAAGACAAGATACGTGTCATTGATGTCCTCCAGCACCAAT- 502
|||..||.|||||..||.|.|.|||.|..||| ||.|.|..|||.|
BPUM_0155___y 484 GTAACCGGCAAAGATCAGCTCCTTGTAAAAGAT---CTTCTGACCCACTC 530
BSNT_00319___ 503 --CAGGGCTCCCATCAAG-CTTTTACTTTTACACGCCGGAAAA-----AG 544
|.||.|||||.||.|| .|.||| |||||.| |.||| ||
BPUM_0155___y 531 TGCCGGACTCCCTTCCAGTGTCTTA-TTTTATA-----GCAAAGAAGCAG 574
BSNT_00319___ 545 CCGGCAAGTACTATTCCCAAGAACGGGACAAAACGATTGAATATTTGACG 594
||||||..|..||.||.|||||..|..|.|.||||||..|||...||.||
BPUM_0155___y 575 CCGGCACCTTTTACTCTCAAGATAGAAAGACAACGATGAAATGGCTGCCG 624
BSNT_00319___ 595 AAAATTCCGCTCGATTATCAAACC-GGGACAAAACACGTATACAGTGACA 643
||..||||..|..|.|| |||||| ||.||..|.|||.|.||.|||||||
BPUM_0155___y 625 AAGGTTCCTTTGCAATA-CAAACCAGGCACCCAGCACATTTATAGTGACA 673
BSNT_00319___ 644 TTGGATATATGCTACTTGGGTGT----ATTGTCGAAAAACTCACTGGCAA 689
|||..||.||||| .||.||..| ||||...||||| ||.||.|.
BPUM_0155___y 674 TTGATTACATGCT-GTTAGGCATGATCATTGAGAAAAAA---ACAGGGAT 719
BSNT_00319___ 690 ACCGCTTGATGTCTACACGGAG------CAAGAGCTCTACAAACCGCTCA 733
.||.||||| ||.|.|.|.|| ||| |||||.||||||| |
BPUM_0155___y 720 GCCTCTTGA--TCAATATGTAGAGTCGACAA----TCTACCAACCGCT-A 762
BSNT_00319___ 734 GG-CTGAAGCATACCTTGTACAATCCGCTGCAAAAGGGCTTTAAACCGAA 782
|| ||.||.||.|||.|||.|||||||||||||||.||.|||||||||||
BPUM_0155___y 763 GGTCTCAAACACACCATGTTCAATCCGCTGCAAAAAGGTTTTAAACCGAA 812
BSNT_00319___ 783 ACAGTTCGCAGCTACTGAACGAATGGGCAATACACGTGACGGCGTTATTC 832
.||.||.|||||.||.|||||..|.||.|||.|.||.||.||.||.|||.
BPUM_0155___y 813 GCATTTTGCAGCAACCGAACGTGTAGGTAATTCGCGAGATGGTGTCATTG 862
BSNT_00319___ 833 AATTCCCTAACATCCGCACAAACACGCTGCAAGGAGAGGTGCATGACGAA 882
|.||....|||||.||||.|.||||.||||.|||.||.||.||.||.|||
BPUM_0155___y 863 ATTTTGAAAACATTCGCAGATACACCCTGCTAGGCGAAGTACACGATGAA 912
BSNT_00319___ 883 AAAGCGTTTTACTCAATGGATGGCGTGTCTGGGCATGCCGGATTGTTCTC 932
|||||.|||||||||||||..||.||.|||||.|||||.|||.|.|||||
BPUM_0155___y 913 AAAGCATTTTACTCAATGGCAGGAGTCTCTGGTCATGCTGGACTTTTCTC 962
BSNT_00319___ 933 AAATGCAGAT--GATATGGCCATACTGCTGCAAGTCATGTTAAACAAAGG 980
.|| ||.|| |||||||||.||||.||.||..|||||.|.||||||||
BPUM_0155___y 963 TAA--CATATCCGATATGGCCGTACTACTCCAGCTCATGCTGAACAAAGG 1010
BSNT_00319___ 981 TTCATACCGAAACATTTCTTTATTTGATCAGAAAACAGC------CGACC 1024
....||..||||.|...|..|.|||||||| ||| .||.|
BPUM_0155___y 1011 AGGCTATGGAAAAACCACCATCTTTGATCA------AGCTTCTATTGATC 1054
BSNT_00319___ 1025 TGTTTACAGCACCTTCAGCAACAGACCCGACATTCGCTCTTGGCTGGAGG 1074
|.||||||||..||||.|..|||.||||.||||.||..||.||||||
BPUM_0155___y 1055 TCTTTACAGCCTCTTCTGATACAAACCCAACATACGGGCTAGGCTGG--- 1101
BSNT_00319___ 1075 CGGAACGGAAGTAAAAG----------CATGGAATGGATGTTTGGCCCTC 1114
||.|| |||.| ||||||||||||||||||.....
BPUM_0155___y 1102 -----CGTAA--AAACGGTCATACTGACATGGAATGGATGTTTGGAAAAT 1144
BSNT_00319___ 1115 ATGCCAGTGAAAATGCTTACGGGCATACCGGCTGGACAGGGACAGTTACA 1164
|.||.|||.|..|.||.||.||.||||||||||||||.||.||..|.|||
BPUM_0155___y 1145 ACGCAAGTAACGAAGCCTATGGACATACCGGCTGGACCGGAACCATGACA 1194
BSNT_00319___ 1165 ATTATTGATCCAGCATACAATTTAGGCATCGCATTGTTAACAAATAAAAA 1214
.|.|||||||||..|.|.|||.|||||||||..|||.|.||||||||.||
BPUM_0155___y 1195 TTGATTGATCCAAAACATAATCTAGGCATCGTCTTGCTGACAAATAAGAA 1244
BSNT_00319___ 1215 GCATACACCAGTTATTGATCCGGAAGAAAATCCAAACGTC--TTTGAGGG 1262
.|||.|.||.||..||...||.||||..||.||||| || |||||.||
BPUM_0155___y 1245 ACATTCGCCTGTCGTTTCACCTGAAGCCAACCCAAA--TCAATTTGAAGG 1292
BSNT_00319___ 1263 TGATCAATTTGCAACAGGCAGTTATGGAAGTGTCATAACCGCGATTTATG 1312
|||.|..||..||||.||||.|||||||||..|.||.||.||.||.||||
BPUM_0155___y 1293 TGACCTTTTCCCAACTGGCACTTATGGAAGCATTATGACAGCCATCTATG 1342
BSNT_00319___ 1313 AAGCGATGGAGTGA 1326
||.|..|..|||.|
BPUM_0155___y 1343 AATCTTTTAAGTAA 1356
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