Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00304 and BPUM_0151
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:13
# Commandline: needle
# -asequence dna-align/BSNT_00304___ybaR.1.24716.seq
# -bsequence dna-align/BPUM_0151___sulP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00304___ybaR-BPUM_0151___sulP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00304___ybaR-BPUM_0151___sulP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00304___ybaR
# 2: BPUM_0151___sulP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1525
# Identity: 1005/1525 (65.9%)
# Similarity: 1005/1525 (65.9%)
# Gaps: 170/1525 (11.1%)
# Score: 3112.5
#
#
#=======================================
BSNT_00304___ 1 TTGAATGATAGTTTTACAT-TAAAACAGCAATGGTTCGGCAATATCCGAA 49
||||| ||.||||..| ||||.||..|||||||.||..||.|.||..
BPUM_0151___s 1 TTGAA----AGATTTATTTGTAAAGCAAGAATGGTTTGGATATGTGCGTC 46
BSNT_00304___ 50 AAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATTCCTGAAGCG 99
|.||..|.||.||.||.||||||||.||..|.||.|||||||||||.|||
BPUM_0151___s 47 AGGATGTGCTGGCGGGTATTTTAGTGGCTCTGGCTTTAATTCCTGAGGCG 96
BSNT_00304___ 100 ATTGGCTTTTCTATTATAGCCGGTGTGGATCCGATGGTCGGTCTTTATGC 149
||||..|||||.|||||.||.||.||.|||||.|.|||.||..|.|||||
BPUM_0151___s 97 ATTGCGTTTTCGATTATTGCGGGCGTTGATCCAAAGGTTGGGTTGTATGC 146
BSNT_00304___ 150 GTCATTTTGTATAGCCATTATTATTTCTATTTTTGGCGGCAGACCTGGCA 199
.||.||||||||.||||||.|.|||||..||.||||.||..||||.||.|
BPUM_0151___s 147 TTCGTTTTGTATTGCCATTGTCATTTCGTTTGTTGGTGGACGACCAGGTA 196
BSNT_00304___ 200 TGATTTCAGCTGCGACAGGCTCAATGGCAGTCGTTATGGTGTCGCTGGTT 249
|||||||.|||||.|||||..|.|||||..|.||||||||.....||||.
BPUM_0151___s 197 TGATTTCGGCTGCTACAGGGGCTATGGCTCTGGTTATGGTTAATTTGGTA 246
BSNT_00304___ 250 GCTGATCATGGGCTTCAGTATTTATTTGCGGCTACGATTTTGACAGGTAT 299
|||||||||||..|.||.||.||.|||||||||||||||||.|||||..|
BPUM_0151___s 247 GCTGATCATGGATTGCAATACTTGTTTGCGGCTACGATTTTAACAGGACT 296
BSNT_00304___ 300 TATTCAGGT--------GATTTT----AG-GTATCAGTAAAATTGCAAGA 336
.|||||..| ||.||| || ||.|| |.
BPUM_0151___s 297 GATTCAAATAGTGTTTGGACTTTGCCGAGTGTCTC-------------GT 333
BSNT_00304___ 337 TTAATGAAATTCATCCCGCGTTCTGTGATGATCGGGTTTGTGAATGCGCT 386
.|.|||||.||.||.|||.|.||.||.|||.|.||.||||||||||||.|
BPUM_0151___s 334 CTGATGAAGTTTATTCCGAGATCCGTAATGGTTGGTTTTGTGAATGCGTT 383
BSNT_00304___ 387 GGCGATCCTTATCTTCTCAGCGCAGCTTCCCCAGTTTGAAGGTGCTTC-T 435
|||.||..|.|||||....||.||||||||.||.||||..||.|..|| |
BPUM_0151___s 384 GGCTATTATGATCTTTATGGCTCAGCTTCCGCATTTTGTTGGGGAATCAT 433
BSNT_00304___ 436 TGGAGCATGTAT----------GCGATGCTTGCCGGGTCGTTGGTTATTA 475
||| .||||||| |||.|||| |||.|.||.|
BPUM_0151___s 434 TGG-CCATGTATATCATGACAGGCGGTGCT----------TTGCTGATCA 472
BSNT_00304___ 476 TTTATGTGCTGCCGAGATTTACGACTGCTG----------TTCCGTCTCC 515
|||||.|..|||||| ||.|| |.||.||.||
BPUM_0151___s 473 TTTATTTATTGCCGA----------TGGTGGTAAAGGTGATACCTTCCCC 512
BSNT_00304___ 516 GCTTGTGGCGATTATTGTGATGACAATAATTGCGGTCACTTT--CCATGT 563
.||..|.|||||||||||.|||||.||.|||||.|| .||| .|||.|
BPUM_0151___s 513 CCTCATTGCGATTATTGTCATGACGATCATTGCTGT--ATTTGGACATAT 560
BSNT_00304___ 564 GGATGTGCGGACGGTTGGTGATATGGGCAATATTTCTAGTTCATTGCCT- 612
.||||||.|.||.|||||.||||||||..|..||.|||||.|.||||||
BPUM_0151___s 561 TGATGTGAGAACAGTTGGAGATATGGGAGAGCTTCCTAGTACTTTGCCTG 610
BSNT_00304___ 613 CATTTCTTAATCCCTGATGTTCCGTTTACCTTTGAAACAC-TGCAAATTA 661
|.|||| |.||.|||.|.||||||||||.||..||.||.| ||| .||.|
BPUM_0151___s 611 CTTTTC-TGATTCCTCAAGTTCCGTTTAGCTGGGAGACTCTTGC-TATCA 658
BSNT_00304___ 662 TTTTTCCTTATTCAATTGCTTTAGCGTTTGTCGGGTTGCTTGAATCTTTG 711
|||||||||||||..|.||..||||..|.||.||.||.|||||.|||.|.
BPUM_0151___s 659 TTTTTCCTTATTCTTTAGCGCTAGCCATGGTTGGTTTACTTGAGTCTCTT 708
BSNT_00304___ 712 CTGACAGCACAGATTATTGATGAGATGACGGATACGGACAGT-GATAAAA 760
.|.||.|||||||||.|||||||.||||||||.|||...||| || ||.|
BPUM_0151___s 709 TTAACTGCACAGATTGTTGATGATATGACGGAGACGTCTAGTCGA-AAGA 757
BSNT_00304___ 761 ATAAAGAGAGC-CGCGGACAGGGAATTGCGAATATCGTGACTGGATTCTT 809
|.||.|| ||| .|.||.||.||.|||||.|||.|.||..|.||||||||
BPUM_0151___s 758 ACAAGGA-AGCGAGAGGTCAAGGGATTGCCAATGTGGTTGCAGGATTCTT 806
BSNT_00304___ 810 TGGCGGAATGGCAGGCTGCGCTATGATCGGACAATCTGTCATTAATACAA 859
|||.||.|||||.||.||.||.|||||.||.|||||.||.||.|||||.|
BPUM_0151___s 807 TGGTGGTATGGCTGGTTGTGCGATGATTGGTCAATCAGTGATCAATACGA 856
BSNT_00304___ 860 AAGCGGGCGGTCGCGGACGTTTGTCAGCATTTGTTGCCGGTGCTTTTCTG 909
|.||.|||||.||.||.||..|.||..|.|||||.||.|||||.|||.|.
BPUM_0151___s 857 AGGCAGGCGGGCGTGGCCGACTTTCTACCTTTGTAGCGGGTGCCTTTTTA 906
BSNT_00304___ 910 ATGTTTTTAATTGCGGTGTTAAGTCATGTCGTGGTGAAAATCCCAATGGC 959
|||.||.|.|||...||..|..||.||||.|||||..|.||.||.|||||
BPUM_0151___s 907 ATGGTTCTCATTTTTGTACTTGGTGATGTTGTGGTTCAGATTCCGATGGC 956
BSNT_00304___ 960 GGCGTTAGTAGCTGTAATGGTTATGGTGTCTGTCGGCACTTTTGATTGGT 1009
.||..|.||.|||||.|||.|||||||.||.||.||.||.|||||||||.
BPUM_0151___s 957 TGCTCTTGTGGCTGTGATGATTATGGTCTCCGTTGGGACATTTGATTGGA 1006
BSNT_00304___ 1010 CTTCCTT--AAAAGGTCTCAAAAAAG-CGCCGCTCACGGACTCGATTGTC 1056
.|||||| |..||.| ||||||| ..|||...||.||.||.||.||.
BPUM_0151___s 1007 GTTCCTTTCAGCAGCT---AAAAAAGAATCCGAAAACAGATTCTATCGTG 1053
BSNT_00304___ 1057 ATGGTTGTGACTGTGGTTACGGTTGTTGTGACGGATGACTTATCTAAGGG 1106
|||.||||.||.||.||.|||||.||..|.||..||||.|||||.||.||
BPUM_0151___s 1054 ATGATTGTTACGGTCGTGACGGTGGTGTTAACTCATGATTTATCAAAAGG 1103
BSNT_00304___ 1107 TGTATTTGTCGGTGTTCTTTTAAGTGCCGTGTTCTTTGTGGCAAAAATCT 1156
|||.||||..|||||.||..|.||.||.||.|||||||||||||||||.|
BPUM_0151___s 1104 TGTTTTTGCAGGTGTGCTACTTAGCGCTGTATTCTTTGTGGCAAAAATAT 1153
BSNT_00304___ 1157 CGAAGCTGAAAATCGTTTCTCATGCAGAGGATCAAAAGCTTAGAACG--- 1203
|||||||..|.||....|||..|| |||||| .||.|.|
BPUM_0151___s 1154 CGAAGCTTCATATTACCTCTACTG---------AAAAGC-AAGTAGGGAC 1193
BSNT_00304___ 1204 -------TATCAAGTGAAGGGGCAAATCTTTTTTGCGTCAGTGACTGATC 1246
||||.|.|.||.||.|||||.||.|||||.||.||.||||||.
BPUM_0151___s 1194 TTGGGTTTATCGAATTAAAGGTCAAATTTTCTTTGCTTCTGTCACTGATT 1243
BSNT_00304___ 1247 TTA-CGAATGCGTTTATATATCAAG---AGGATATTGAGCGGGTTGTGAT 1292
|.| |.|| |||| |..||||.| |.|||.|..|....||||||||
BPUM_0151___s 1244 TCATCCAA-GCGT---TCCATCAGGGGAATGATCTCCAAACCGTTGTGAT 1289
BSNT_00304___ 1293 TGACTTAACTGAAGCTCACGTATGGGACGATTCTGGTGCGGCCGCACTTG 1342
|||..||.|||||||.|...|||||||.||.||.||||.|||.|| |
BPUM_0151___s 1290 TGATCTATCTGAAGCGCGTATATGGGATGAATCGGGTGTGGCAGC----G 1335
BSNT_00304___ 1343 ATAAGATTGTTGCGAA-GT-TCAAGGAACAAGGCAT--TGAAGCTGAGTT 1388
||| ||| || |.||||| ||.|.|| ||.|||||...|
BPUM_0151___s 1336 ATA----------GAACGTGTAAAGGA--AAAGTATCATGCAGCTGGCGT 1373
BSNT_00304___ 1389 AAAAG--------GTTTGAAT--------AAAG-CGAGTAAATCTCTAAT 1421
|.||| |||.|||| |||| || ||| |||..|
BPUM_0151___s 1374 ACAAGTAGACATAGTTGGAATGGATACACAAAGTCG---AAA--TCTTGT 1418
BSNT_00304___ 1422 GAAACAG----ATGG-----CATAA 1437
||||||| |||| |||||
BPUM_0151___s 1419 GAAACAGGTGAATGGTTCTTCATAA 1443
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