Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00260 and BPUM_0143
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:13
# Commandline: needle
# -asequence dna-align/BSNT_00260___ybaK.1.24716.seq
# -bsequence dna-align/BPUM_0143___ybaK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00260___ybaK-BPUM_0143___ybaK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00260___ybaK-BPUM_0143___ybaK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00260___ybaK
# 2: BPUM_0143___ybaK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 538
# Identity: 273/538 (50.7%)
# Similarity: 273/538 (50.7%)
# Gaps: 188/538 (34.9%)
# Score: 611.5
#
#
#=======================================
BSNT_00260___ 1 ATGGCAGAAGTACTGTC-TTTTATGGATGTGAAACGCCAAAAGGATTTTG 49
||||||||.||.||.|| ||||||..|| ||||| .|||||.||
BPUM_0143___y 1 ATGGCAGAGGTTCTTTCATTTTATCAAT-TGAAA--ACAAAACGA----- 42
BSNT_00260___ 50 AAT-------TAGAAAAGAA---CTTGCTCAAAGAAC--TCTCTCT---- 83
.|| |.|||||||| .|||| |.|| |.|||||
BPUM_0143___y 43 GATGTCACGCTTGAAAAGAAGCTGTTGC-----GTACATTGTCTCTTCAA 87
BSNT_00260___ 84 ---GAGACAAATTATCCAGTCTG-----TTAAGGATTGTTTAGAACCATT 125
|.|||..||..| |||| ||.|.|| ||||.| |
BPUM_0143___y 88 CAGGTGACGGATGCT----TCTGAGAAATTCACGA------AGAAGC--T 125
BSNT_00260___ 126 ATTTCCATTTTTACATGATGAACGAGAT---ATTATTACCGAAGGCTGTA 172
.||.|| ||||.|| |||||.|.||.| |||||.|..||.|||||||
BPUM_0143___y 126 GTTCCC--TTTTGCA-GATGATCCAGCTGGGATTATGAGTGATGGCTGTA 172
BSNT_00260___ 173 TTGATTTTGCTATAGAAGCCTATTTGTTAGGCGGGCGTTTTGGGATATTC 222
|||||||.||.||.||.||||.|||...||| |||||.||.|
BPUM_0143___y 173 TTGATTTCGCCATTGAGGCCTTTTTAGCAGG---------TGGGAGATAC 213
BSNT_00260___ 223 GGCT----------ATTACGGAGAATCCATGC--------AGAGTA---- 250
|| | |.|||||.|||| |||.| |.||.|
BPUM_0143___y 214 GG-TGAGTCGAGTAAGTACGGTGAAT-CATTCGATGATATAAAGAAGCGG 261
BSNT_00260___ 251 TCAGTGCCCGCTCTGCAAGA-GAAGAAGAAGAGCT--------ACGTATG 291
|||||.| | ||||||.|.||||| |..||..
BPUM_0143___y 262 TCAGTTC------------ATGAAGAAAATGAGCTGGTTGAGGAGCTAGC 299
BSNT_00260___ 292 GAGTTTTTTGATTATCTCTATAATTGGATACACGAGCAATACGCAACATT 341
|.|.|.|||| |.||..|.|| |.||||.| |
BPUM_0143___y 300 GGGGTGTTTG-------CAATCGTGGG--------GGAATATG------T 328
BSNT_00260___ 342 T--GATAAAAACACGGTTTATGAAGCGGCACGCAAG-------------- 375
| || |||.||||| |||
BPUM_0143___y 329 TCCGA--------------ATGGAGCGG-----AAGATGTCGTGTCTATA 359
BSNT_00260___ 376 TTCATT----AAAGAT------------TGGTGGACAGCAGGGTTTGTTC 409
|.|||| ||.||| |||||| |||.|.||.| |||
BPUM_0143___y 360 TCCATTTGCGAAGGATTTTTTAAGCATGTGGTGG-CAGGAAGGCT--TTC 406
BSNT_00260___ 410 ---AAAGAGAAAAACAGTGTAAGCTTCGCATGCGGTAA 444
||..|||||||..|..|||||||||..|||..|||
BPUM_0143___y 407 GAGAATCAGAAAAAAGGCATAAGCTTCGGCTGCACTAA 444
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