Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00253 and BPUM_0135

See Amino acid alignment / Visit BSNT_00253 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:12
# Commandline: needle
#    -asequence dna-align/BSNT_00253___truA.1.24716.seq
#    -bsequence dna-align/BPUM_0135___truA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00253___truA-BPUM_0135___truA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00253___truA-BPUM_0135___truA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00253___truA
# 2: BPUM_0135___truA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     528/776 (68.0%)
# Similarity:   528/776 (68.0%)
# Gaps:          64/776 ( 8.2%)
# Score: 1577.5
# 
#
#=======================================

BSNT_00253___      1 ATGAGACTGAAATGCACGATTTCTTATGACGG---ACATTTGTTTAACGG     47
                     ||||...|.|||||.||..|.||.|||||.||   ||||   |||||.||
BPUM_0135___t      1 ATGAAGGTCAAATGTACCGTATCCTATGATGGGACACAT---TTTAAAGG     47

BSNT_00253___     48 TTATCAGGTTCAGCC-GGGCAAAAGAACGGTTCAGGATGAACTGGAGA--     94
                     .||||||||.||||| |||| |..|.||.||||||     || |||||  
BPUM_0135___t     48 CTATCAGGTGCAGCCTGGGC-AGCGGACAGTTCAG-----AC-GGAGATC     90

BSNT_00253___     95 -AGGCTTTGGCTGTCCTGCATAAGT-CAAAAGACAGAA--------TTCC    134
                      ||.||   ||  ||.||||.||.| ||.|| ||||.|        ||||
BPUM_0135___t     91 GAGTCT---GC--TCTTGCAAAAATGCACAA-ACAGGATGAACTGGTTCC    134

BSNT_00253___    135 GGTCGTTTCGTCTGGAAGAACAGACAGCGGGGTTCA--CGCAGCCGGACA    182
                     |.|.||..|.|||||..|.||.||||||||.||.||  ||.||  ||.||
BPUM_0135___t    135 GATTGTGGCTTCTGGCCGGACGGACAGCGGCGTCCATGCGAAG--GGGCA    182

BSNT_00253___    183 GGTGATTCATTTTGACACTCCACTGTCTATCCCGGCTGAGAGATGGCCAT    232
                     |||.||.|||||.|||||.||.||.||.||.|||...||.||||||||.|
BPUM_0135___t    183 GGTCATCCATTTCGACACGCCGCTCTCGATTCCGATGGAAAGATGGCCTT    232

BSNT_00253___    233 ATGCCTTAAATGCACTGCTTCCGGACGATATCGCAG-TCAAACAGGC--A    279
                     .||||.|.|||...||.||.|||||.||.|||..|| ||.|| ||||  |
BPUM_0135___t    233 TTGCCCTCAATAGTCTCCTGCCGGATGACATCAGAGTTCTAA-AGGCTGA    281

BSNT_00253___    280 GAAATTGCGGATGATGGGTTCCATGCACGATTTAGCGCAGTCAAAAAAGA    329
                     |.||  |.||||||...|||.||||||||.|||||.|..||....||.||
BPUM_0135___t    282 GGAA--GTGGATGAGTCGTTTCATGCACGTTTTAGTGTCGTTTCGAAGGA    329

BSNT_00253___    330 ATATCGCTACTTTGTATACACGGAGAAACACCCGGACGTATTTAAACGGC    379
                     .||.||.||....||.|..|||||.|..||||...|.||.||.|...|.|
BPUM_0135___t    330 GTACCGTTATAAGGTCTCAACGGAAACGCACCAAAATGTGTTCACGAGAC    379

BSNT_00253___    380 ATTACGCTTACCATTTTTCATATCGCCTTAATGTGCAGGAC---ATGAGA    426
                     |.||.||.|.|||.|||.|.||.||..|..|  |||| |||   ||||||
BPUM_0135___t    380 AGTATGCCTGCCACTTTCCTTACCGGTTGGA--TGCA-GACAAAATGAGA    426

BSNT_00253___    427 GAAGCGGCAAAGCAT--CTTATAGGGACACATGATTTTACGAGCTTTTGC    474
                     |||||.||  .|.||  |||||.||.|||||.|||||.||.||||||||.
BPUM_0135___t    427 GAAGCTGC--TGGATACCTTATTGGCACACACGATTTCACAAGCTTTTGT    474

BSNT_00253___    475 GCGGCTAAAACAGAAGTGCAGGACAAGGTAAGAACGATATACGAACTTGA    524
                     ||.||.||.|||||.||.|||||||||||.||...|||.|||...|||||
BPUM_0135___t    475 GCAGCCAATACAGAGGTTCAGGACAAGGTGAGGGAGATTTACACCCTTGA    524

BSNT_00253___    525 TTGGACTGAGACGGCT--GACGGCCTGCAAATGCGGATCACAGGCAGCGG    572
                     .||||  .|.|||.||  |||||.||..|||||||..|.|.|||.|..||
BPUM_0135___t    525 GTGGA--AAAACGTCTCAGACGGGCTTGAAATGCGCGTGAGAGGAAATGG    572

BSNT_00253___    573 TTTCTTATATAATATGGTCAGAATTATTGCGGGTACTTTGCTTGATGCAG    622
                     .||.|||||.||.|||||..|||||||.||.||.||.||.|||||.|..|
BPUM_0135___t    573 CTTTTTATACAACATGGTGCGAATTATCGCTGGAACGTTACTTGAAGTCG    622

BSNT_00253___    623 GTAT-TGGAAAAATTTCTCCC-GATGAGGTGAAATCCATGCTGGAAG--C    668
                     | || ||| .|||||.|.||| ||||||.|.|||.|||||||.|..|  |
BPUM_0135___t    623 G-ATCTGG-TAAATTCCACCCTGATGAGATAAAAGCCATGCTTGCCGCCC    670

BSNT_00253___    669 GAAGGATCGCGAAGCGGCAGGGCGCACAGCGCCGGGGCACGGGCTATATT    718
                     |||  ||||||||||||||||....||.|||||..|.|||||.||.||||
BPUM_0135___t    671 GAA--ATCGCGAAGCGGCAGGCAAGACTGCGCCTAGTCACGGACTGTATT    718

BSNT_00253___    719 TATGGAACGTTTACTATGACAACTAA    744
                     |||||.|.||||.|||||||||||||
BPUM_0135___t    719 TATGGGAAGTTTTCTATGACAACTAA    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00253 and BPUM_0135

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
