Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00253 and BPUM_0135
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:12
# Commandline: needle
# -asequence dna-align/BSNT_00253___truA.1.24716.seq
# -bsequence dna-align/BPUM_0135___truA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00253___truA-BPUM_0135___truA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00253___truA-BPUM_0135___truA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00253___truA
# 2: BPUM_0135___truA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity: 528/776 (68.0%)
# Similarity: 528/776 (68.0%)
# Gaps: 64/776 ( 8.2%)
# Score: 1577.5
#
#
#=======================================
BSNT_00253___ 1 ATGAGACTGAAATGCACGATTTCTTATGACGG---ACATTTGTTTAACGG 47
||||...|.|||||.||..|.||.|||||.|| |||| |||||.||
BPUM_0135___t 1 ATGAAGGTCAAATGTACCGTATCCTATGATGGGACACAT---TTTAAAGG 47
BSNT_00253___ 48 TTATCAGGTTCAGCC-GGGCAAAAGAACGGTTCAGGATGAACTGGAGA-- 94
.||||||||.||||| |||| |..|.||.|||||| || |||||
BPUM_0135___t 48 CTATCAGGTGCAGCCTGGGC-AGCGGACAGTTCAG-----AC-GGAGATC 90
BSNT_00253___ 95 -AGGCTTTGGCTGTCCTGCATAAGT-CAAAAGACAGAA--------TTCC 134
||.|| || ||.||||.||.| ||.|| ||||.| ||||
BPUM_0135___t 91 GAGTCT---GC--TCTTGCAAAAATGCACAA-ACAGGATGAACTGGTTCC 134
BSNT_00253___ 135 GGTCGTTTCGTCTGGAAGAACAGACAGCGGGGTTCA--CGCAGCCGGACA 182
|.|.||..|.|||||..|.||.||||||||.||.|| ||.|| ||.||
BPUM_0135___t 135 GATTGTGGCTTCTGGCCGGACGGACAGCGGCGTCCATGCGAAG--GGGCA 182
BSNT_00253___ 183 GGTGATTCATTTTGACACTCCACTGTCTATCCCGGCTGAGAGATGGCCAT 232
|||.||.|||||.|||||.||.||.||.||.|||...||.||||||||.|
BPUM_0135___t 183 GGTCATCCATTTCGACACGCCGCTCTCGATTCCGATGGAAAGATGGCCTT 232
BSNT_00253___ 233 ATGCCTTAAATGCACTGCTTCCGGACGATATCGCAG-TCAAACAGGC--A 279
.||||.|.|||...||.||.|||||.||.|||..|| ||.|| |||| |
BPUM_0135___t 233 TTGCCCTCAATAGTCTCCTGCCGGATGACATCAGAGTTCTAA-AGGCTGA 281
BSNT_00253___ 280 GAAATTGCGGATGATGGGTTCCATGCACGATTTAGCGCAGTCAAAAAAGA 329
|.|| |.||||||...|||.||||||||.|||||.|..||....||.||
BPUM_0135___t 282 GGAA--GTGGATGAGTCGTTTCATGCACGTTTTAGTGTCGTTTCGAAGGA 329
BSNT_00253___ 330 ATATCGCTACTTTGTATACACGGAGAAACACCCGGACGTATTTAAACGGC 379
.||.||.||....||.|..|||||.|..||||...|.||.||.|...|.|
BPUM_0135___t 330 GTACCGTTATAAGGTCTCAACGGAAACGCACCAAAATGTGTTCACGAGAC 379
BSNT_00253___ 380 ATTACGCTTACCATTTTTCATATCGCCTTAATGTGCAGGAC---ATGAGA 426
|.||.||.|.|||.|||.|.||.||..|..| |||| ||| ||||||
BPUM_0135___t 380 AGTATGCCTGCCACTTTCCTTACCGGTTGGA--TGCA-GACAAAATGAGA 426
BSNT_00253___ 427 GAAGCGGCAAAGCAT--CTTATAGGGACACATGATTTTACGAGCTTTTGC 474
|||||.|| .|.|| |||||.||.|||||.|||||.||.||||||||.
BPUM_0135___t 427 GAAGCTGC--TGGATACCTTATTGGCACACACGATTTCACAAGCTTTTGT 474
BSNT_00253___ 475 GCGGCTAAAACAGAAGTGCAGGACAAGGTAAGAACGATATACGAACTTGA 524
||.||.||.|||||.||.|||||||||||.||...|||.|||...|||||
BPUM_0135___t 475 GCAGCCAATACAGAGGTTCAGGACAAGGTGAGGGAGATTTACACCCTTGA 524
BSNT_00253___ 525 TTGGACTGAGACGGCT--GACGGCCTGCAAATGCGGATCACAGGCAGCGG 572
.|||| .|.|||.|| |||||.||..|||||||..|.|.|||.|..||
BPUM_0135___t 525 GTGGA--AAAACGTCTCAGACGGGCTTGAAATGCGCGTGAGAGGAAATGG 572
BSNT_00253___ 573 TTTCTTATATAATATGGTCAGAATTATTGCGGGTACTTTGCTTGATGCAG 622
.||.|||||.||.|||||..|||||||.||.||.||.||.|||||.|..|
BPUM_0135___t 573 CTTTTTATACAACATGGTGCGAATTATCGCTGGAACGTTACTTGAAGTCG 622
BSNT_00253___ 623 GTAT-TGGAAAAATTTCTCCC-GATGAGGTGAAATCCATGCTGGAAG--C 668
| || ||| .|||||.|.||| ||||||.|.|||.|||||||.|..| |
BPUM_0135___t 623 G-ATCTGG-TAAATTCCACCCTGATGAGATAAAAGCCATGCTTGCCGCCC 670
BSNT_00253___ 669 GAAGGATCGCGAAGCGGCAGGGCGCACAGCGCCGGGGCACGGGCTATATT 718
||| ||||||||||||||||....||.|||||..|.|||||.||.||||
BPUM_0135___t 671 GAA--ATCGCGAAGCGGCAGGCAAGACTGCGCCTAGTCACGGACTGTATT 718
BSNT_00253___ 719 TATGGAACGTTTACTATGACAACTAA 744
|||||.|.||||.|||||||||||||
BPUM_0135___t 719 TATGGGAAGTTTTCTATGACAACTAA 744
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