Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00249 and BPUM_0131

See Amino acid alignment / Visit BSNT_00249 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:12
# Commandline: needle
#    -asequence dna-align/BSNT_00249___rplQ.1.24716.seq
#    -bsequence dna-align/BPUM_0131___rplQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00249___rplQ-BPUM_0131___rplQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00249___rplQ-BPUM_0131___rplQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00249___rplQ
# 2: BPUM_0131___rplQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 363
# Identity:     317/363 (87.3%)
# Similarity:   317/363 (87.3%)
# Gaps:           0/363 ( 0.0%)
# Score: 1401.0
# 
#
#=======================================

BSNT_00249___      1 ATGTCATACAGAAAACTAGGACGTACGAGTGCACAGCGTAAAGCTATGCT     50
                     |||.||||||||||.||||||||.||.||||||||.||||||||.|||||
BPUM_0131___r      1 ATGGCATACAGAAAGCTAGGACGCACTAGTGCACAACGTAAAGCAATGCT     50

BSNT_00249___     51 TCGTGATCTTACAACTGATTTGATCATCAACGAAAGAATCGAAACAACTG    100
                     ||||||.||.||.|||||||||||||||||||||.|.|||||||||||||
BPUM_0131___r     51 TCGTGACCTAACGACTGATTTGATCATCAACGAACGCATCGAAACAACTG    100

BSNT_00249___    101 AAACACGTGCGAAAGAACTTCGCTCTGTAGTTGAAAAAATGATCACGCTT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
BPUM_0131___r    101 AAACACGTGCGAAAGAACTTCGCTCTGTAGTTGAAAAAATGATCACTCTT    150

BSNT_00249___    151 GGCAAACGCGGTGATCTTCACGCTCGTCGTCAAGCTGCTGCATACATCCG    200
                     |||||||||||.||||||||.|||||.|||||||||||.||.|||||.||
BPUM_0131___r    151 GGCAAACGCGGAGATCTTCATGCTCGCCGTCAAGCTGCAGCTTACATTCG    200

BSNT_00249___    201 CAACGAGGTTGCAAACGAAGAAAATAACCAAGATGCACTTCAAAAATTAT    250
                     .||.||.||.||.||||..||||..|||||||||||||||||||||||||
BPUM_0131___r    201 TAATGAAGTAGCTAACGCTGAAACAAACCAAGATGCACTTCAAAAATTAT    250

BSNT_00249___    251 TCTCTGACATTGCAACTCGTTACGAGGAGCGCCAAGGCGGATACACACGT    300
                     ||.|||||.||||||||||.|||||.||.||||||||.||||||||.|||
BPUM_0131___r    251 TCGCTGACGTTGCAACTCGCTACGAAGATCGCCAAGGTGGATACACTCGT    300

BSNT_00249___    301 ATTATGAAGCTTGGTCCTCGCCGTGGTGACGGAGCACCAATGGCAATTAT    350
                     ||.|||||||||||.|||||.||.||.||.||.|||||||||||..|.||
BPUM_0131___r    301 ATCATGAAGCTTGGACCTCGTCGCGGCGATGGCGCACCAATGGCTGTCAT    350

BSNT_00249___    351 CGAATTGGTTTAA    363
                     .|||||.||||||
BPUM_0131___r    351 TGAATTAGTTTAA    363


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