Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00238 and BPUM_0120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:11
# Commandline: needle
# -asequence dna-align/BSNT_00238___rpmD.1.24716.seq
# -bsequence dna-align/BPUM_0120___rpmD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00238___rpmD-BPUM_0120___rpmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00238___rpmD-BPUM_0120___rpmD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00238___rpmD
# 2: BPUM_0120___rpmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 183
# Identity: 159/183 (86.9%)
# Similarity: 159/183 (86.9%)
# Gaps: 3/183 ( 1.6%)
# Score: 700.0
#
#
#=======================================
BSNT_00238___ 1 ATGGC---TAAATTAGAAATTACCCTCAAACGAAGTGTAATCGGTCGCCC 47
||||| ||||||||||||||||||||||||.|||||||||||||||||
BPUM_0120___r 1 ATGGCAAATAAATTAGAAATTACCCTCAAACGCAGTGTAATCGGTCGCCC 50
BSNT_00238___ 48 GGAAGACCAACGCGTTACTGTAAGAACACTTGGTTTAAAGAAAACAAACC 97
.|||||.||.||.||.|||||..|.||.||||||.|||||||||||||||
BPUM_0120___r 51 AGAAGATCAGCGTGTCACTGTTCGTACTCTTGGTCTAAAGAAAACAAACC 100
BSNT_00238___ 98 AAACTGTTGTTCATGAAGACAACGCTGCGATCCGTGGTATGATTAATAAA 147
||||.||.||.|||||||||||.||.||||||||.||.||||||||.||.
BPUM_0120___r 101 AAACAGTCGTACATGAAGACAATGCAGCGATCCGCGGCATGATTAACAAG 150
BSNT_00238___ 148 GTATCTCATTTAGTTTCTGTTAAAGAACAATAA 180
||.||||||||||||||||||||||||||||||
BPUM_0120___r 151 GTGTCTCATTTAGTTTCTGTTAAAGAACAATAA 183
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