Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00231 and BPUM_0113

See Amino acid alignment / Visit BSNT_00231 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:11
# Commandline: needle
#    -asequence dna-align/BSNT_00231___rplX.1.24716.seq
#    -bsequence dna-align/BPUM_0113___rplX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00231___rplX-BPUM_0113___rplX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00231___rplX-BPUM_0113___rplX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00231___rplX
# 2: BPUM_0113___rplX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 312
# Identity:     271/312 (86.9%)
# Similarity:   271/312 (86.9%)
# Gaps:           0/312 ( 0.0%)
# Score: 1191.0
# 
#
#=======================================

BSNT_00231___      1 ATGCATGTAAAAAAAGGCGATAAAGTTATGGTTATCTCTGGTAAAGATAA     50
                     ||||||||.|||||.|||||||||||..||||||||||||||||||||||
BPUM_0113___r      1 ATGCATGTTAAAAAGGGCGATAAAGTAGTGGTTATCTCTGGTAAAGATAA     50

BSNT_00231___     51 AGGCAAACAAGGAACAATCCTTGCTGCTTTCCCTAAAAAGGACCGCGTTT    100
                     |||.|||||||||...||||||||||||||||||||.||.|||||.||||
BPUM_0113___r     51 AGGTAAACAAGGAGTCATCCTTGCTGCTTTCCCTAAGAATGACCGTGTTT    100

BSNT_00231___    101 TAGTTGAAGGTGTTAACATGGTAAAGAAACACTCTAAACCAACTCAAGCT    150
                     ||||.||||||.|||||.|.||.||.|||||||||||||||||.||||||
BPUM_0113___r    101 TAGTAGAAGGTATTAACCTTGTGAAAAAACACTCTAAACCAACCCAAGCT    150

BSNT_00231___    151 AACCCTCAAGGCGGTATTTCTAATCAAGAGGCGCCAATTCATGTATCAAA    200
                     ||||||||.|||||.||||||.|.|||||.|||||.||.||.||||||||
BPUM_0113___r    151 AACCCTCAGGGCGGAATTTCTGAACAAGAAGCGCCGATCCACGTATCAAA    200

BSNT_00231___    201 CGTTATGCCGCTCGATCCTAAAACAGGTGAAGTGACTCGCGTAGGATACA    250
                     |||.||||||||.|||||||||||.|||||||||||.||.||.||.||.|
BPUM_0113___r    201 CGTAATGCCGCTTGATCCTAAAACGGGTGAAGTGACACGTGTTGGGTATA    250

BSNT_00231___    251 AAGTGGAAGATGGCAAAAAAGTTCGTGTAGCAAAAAAATCTGGGCAAGTT    300
                     ||||.||.||.||.||.|||||.||||||||.||||||||||||||||||
BPUM_0113___r    251 AAGTTGAGGACGGAAAGAAAGTCCGTGTAGCGAAAAAATCTGGGCAAGTT    300

BSNT_00231___    301 CTAGATAAATAG    312
                     ||||||||||||
BPUM_0113___r    301 CTAGATAAATAG    312


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