Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00225 and BPUM_0107

See Amino acid alignment / Visit BSNT_00225 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:10
# Commandline: needle
#    -asequence dna-align/BSNT_00225___rplV.1.24716.seq
#    -bsequence dna-align/BPUM_0107___rplV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00225___rplV-BPUM_0107___rplV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00225___rplV-BPUM_0107___rplV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00225___rplV
# 2: BPUM_0107___rplV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 343
# Identity:     307/343 (89.5%)
# Similarity:   307/343 (89.5%)
# Gaps:           2/343 ( 0.6%)
# Score: 1379.0
# 
#
#=======================================

BSNT_00225___      1 ATGCAAGCTAAAGCTGTTGCAAGAACAGTCCGTATTGCTCCTCGTAAAGC     50
                     |||||||||||||||||.||||||||||||||||||||||||||||||||
BPUM_0107___r      1 ATGCAAGCTAAAGCTGTCGCAAGAACAGTCCGTATTGCTCCTCGTAAAGC     50

BSNT_00225___     51 ACGTCTAGTAATGGACCTGATTCGAGGCAAGCAAGTAGGTGAGGCAGTAT    100
                     |||||||||||||||||||||.|||||.|||||||||||.||.|||||.|
BPUM_0107___r     51 ACGTCTAGTAATGGACCTGATCCGAGGTAAGCAAGTAGGAGAAGCAGTTT    100

BSNT_00225___    101 CAATCTTGAACCTTACACC-AAGAGCTGCTTCTCCAATTATCGAGAAAGT    149
                     |.|||||.||||||||||| ||| ||||||||.||||||||.||.|||||
BPUM_0107___r    101 CTATCTTAAACCTTACACCTAAG-GCTGCTTCACCAATTATTGAAAAAGT    149

BSNT_00225___    150 ATTAAAATCCGCTATTGCAAATGCTGAGCATAACTATGAAATGGACGCTA    199
                     |||||||||.|||||.|||||.||||||||.|||||.||..|||||||||
BPUM_0107___r    150 ATTAAAATCTGCTATCGCAAACGCTGAGCACAACTACGAGTTGGACGCTA    199

BSNT_00225___    200 ACAACCTGGTTATTTCTCAAGCATTCGTTGACGAAGGCCCTACGTTAAAA    249
                     |||.|||.||.|||.||||||||||||||||||||||.||.||..|.||.
BPUM_0107___r    200 ACAGCCTAGTGATTACTCAAGCATTCGTTGACGAAGGTCCAACACTTAAG    249

BSNT_00225___    250 AGATTCCGCCCACGTGCTATGGGACGTGCGAGCCAAATCAACAAACGTAC    299
                     ||||||||.||||||||||||||.|||||||||..|||.|||||||||||
BPUM_0107___r    250 AGATTCCGTCCACGTGCTATGGGTCGTGCGAGCGCAATTAACAAACGTAC    299

BSNT_00225___    300 GAGCCACATTACAATCGTTGTATCAGAAAAGAAGGAGGGATAA    342
                     .||||||||||||||||||||||||||||||||||||||||||
BPUM_0107___r    300 TAGCCACATTACAATCGTTGTATCAGAAAAGAAGGAGGGATAA    342


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