Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00221 and BPUM_0103

See Amino acid alignment / Visit BSNT_00221 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:10
# Commandline: needle
#    -asequence dna-align/BSNT_00221___rplD.1.24716.seq
#    -bsequence dna-align/BPUM_0103___rplD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00221___rplD-BPUM_0103___rplD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00221___rplD-BPUM_0103___rplD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00221___rplD
# 2: BPUM_0103___rplD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 624
# Identity:     558/624 (89.4%)
# Similarity:   558/624 (89.4%)
# Gaps:           0/624 ( 0.0%)
# Score: 2526.0
# 
#
#=======================================

BSNT_00221___      1 ATGCCAAAAGTAGCATTATACAACCAAAACGGTTCTACTGCTGGTGACAT     50
                     |||||||||||||||||||..||||||||||||||||||...|||||.||
BPUM_0103___r      1 ATGCCAAAAGTAGCATTATTTAACCAAAACGGTTCTACTAACGGTGAAAT     50

BSNT_00221___     51 CGAATTAAACGCTTCTGTATTTGGTATCGAACCAAATGAGAGTGTTGTAT    100
                     ||||||||||||||||||.|||||.||.||.|||||.||.||.||.||||
BPUM_0103___r     51 CGAATTAAACGCTTCTGTGTTTGGAATTGAGCCAAACGAAAGCGTAGTAT    100

BSNT_00221___    101 TCGACGCTATTCTTATGCAAAGAGCTTCCTTACGTCAAGGAACTCACAAA    150
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
BPUM_0103___r    101 TCGATGCTATTCTTATGCAAAGAGCTTCCTTACGTCAAGGAACTCACAAA    150

BSNT_00221___    151 GTAAAAAATCGTTCTGAAGTACGCGGCGGAGGTCGTAAACCATGGCGTCA    200
                     |||||||.|||||||||||||||.||||||||||||||.||.|||.|.||
BPUM_0103___r    151 GTAAAAACTCGTTCTGAAGTACGTGGCGGAGGTCGTAAGCCTTGGAGACA    200

BSNT_00221___    201 AAAAGGTACTGGACGTGCCCGTCAAGGTTCAATCCGTTCACCGCAATGGC    250
                     .||.||||||||.|||||.|||||||||||.|||||||||||.|||||||
BPUM_0103___r    201 GAAGGGTACTGGTCGTGCTCGTCAAGGTTCTATCCGTTCACCACAATGGC    250

BSNT_00221___    251 GCGGAGGTGGTGTCGTATTCGGCCCAACACCACGCAGCTATTCTTATAAA    300
                     |||||||.|||.||||||||||.|||||||||||||||||||||||||||
BPUM_0103___r    251 GCGGAGGCGGTATCGTATTCGGTCCAACACCACGCAGCTATTCTTATAAA    300

BSNT_00221___    301 TTACCTAAAAAAGTTCGCCGCTTGGCAATCAAATCAGTATTGTCTTCTAA    350
                     ||||||||||||||||||||||||||.|||||.|||||||||||||||||
BPUM_0103___r    301 TTACCTAAAAAAGTTCGCCGCTTGGCTATCAAGTCAGTATTGTCTTCTAA    350

BSNT_00221___    351 AGTGATCGACAACAATATCATCGTTCTTGAAGATCTTACTCTTGATACGG    400
                     |||.|||||||||||.||||||||||||||||||||.|||||||||.|.|
BPUM_0103___r    351 AGTAATCGACAACAACATCATCGTTCTTGAAGATCTGACTCTTGATGCAG    400

BSNT_00221___    401 CTAAAACAAAAGAAATGGCAGCTATCCTTAAAGGGTTATCTGTTGAGAAA    450
                     ..|||||.||||||.|.||||..|||||||||||.||||||||.|||||.
BPUM_0103___r    401 TGAAAACGAAAGAATTCGCAGGCATCCTTAAAGGATTATCTGTCGAGAAG    450

BSNT_00221___    451 AAAGCTTTAATCGTAACTGCGGATGCAAACGAAGCAGTAGCATTATCTGC    500
                     |||||.||.|||||.||||||||||||||||||.||||.||.||||||||
BPUM_0103___r    451 AAAGCGTTGATCGTCACTGCGGATGCAAACGAAACAGTTGCTTTATCTGC    500

BSNT_00221___    501 TCGTAACATTCCTGGAGTTACTGTTGTTGAAGCTAATGGAATCAACGTTT    550
                     |||||||||.||||||||.||.||||||||||||||.||.||||||||..
BPUM_0103___r    501 TCGTAACATCCCTGGAGTAACAGTTGTTGAAGCTAACGGTATCAACGTCC    550

BSNT_00221___    551 TAGACGTTGTCAACCACGAGAAGCTTCTGATTACAAAAGCAGCGGTTGAA    600
                     |.||||||||||||||||||||.||||||||.||.|||||||||||||||
BPUM_0103___r    551 TTGACGTTGTCAACCACGAGAAACTTCTGATCACTAAAGCAGCGGTTGAA    600

BSNT_00221___    601 AAAGTAGAGGAGGTGCTTGCATAA    624
                     |||||||||||||..|||||||||
BPUM_0103___r    601 AAAGTAGAGGAGGGACTTGCATAA    624


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