Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00221 and BPUM_0103
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:10
# Commandline: needle
# -asequence dna-align/BSNT_00221___rplD.1.24716.seq
# -bsequence dna-align/BPUM_0103___rplD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00221___rplD-BPUM_0103___rplD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00221___rplD-BPUM_0103___rplD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00221___rplD
# 2: BPUM_0103___rplD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 624
# Identity: 558/624 (89.4%)
# Similarity: 558/624 (89.4%)
# Gaps: 0/624 ( 0.0%)
# Score: 2526.0
#
#
#=======================================
BSNT_00221___ 1 ATGCCAAAAGTAGCATTATACAACCAAAACGGTTCTACTGCTGGTGACAT 50
|||||||||||||||||||..||||||||||||||||||...|||||.||
BPUM_0103___r 1 ATGCCAAAAGTAGCATTATTTAACCAAAACGGTTCTACTAACGGTGAAAT 50
BSNT_00221___ 51 CGAATTAAACGCTTCTGTATTTGGTATCGAACCAAATGAGAGTGTTGTAT 100
||||||||||||||||||.|||||.||.||.|||||.||.||.||.||||
BPUM_0103___r 51 CGAATTAAACGCTTCTGTGTTTGGAATTGAGCCAAACGAAAGCGTAGTAT 100
BSNT_00221___ 101 TCGACGCTATTCTTATGCAAAGAGCTTCCTTACGTCAAGGAACTCACAAA 150
||||.|||||||||||||||||||||||||||||||||||||||||||||
BPUM_0103___r 101 TCGATGCTATTCTTATGCAAAGAGCTTCCTTACGTCAAGGAACTCACAAA 150
BSNT_00221___ 151 GTAAAAAATCGTTCTGAAGTACGCGGCGGAGGTCGTAAACCATGGCGTCA 200
|||||||.|||||||||||||||.||||||||||||||.||.|||.|.||
BPUM_0103___r 151 GTAAAAACTCGTTCTGAAGTACGTGGCGGAGGTCGTAAGCCTTGGAGACA 200
BSNT_00221___ 201 AAAAGGTACTGGACGTGCCCGTCAAGGTTCAATCCGTTCACCGCAATGGC 250
.||.||||||||.|||||.|||||||||||.|||||||||||.|||||||
BPUM_0103___r 201 GAAGGGTACTGGTCGTGCTCGTCAAGGTTCTATCCGTTCACCACAATGGC 250
BSNT_00221___ 251 GCGGAGGTGGTGTCGTATTCGGCCCAACACCACGCAGCTATTCTTATAAA 300
|||||||.|||.||||||||||.|||||||||||||||||||||||||||
BPUM_0103___r 251 GCGGAGGCGGTATCGTATTCGGTCCAACACCACGCAGCTATTCTTATAAA 300
BSNT_00221___ 301 TTACCTAAAAAAGTTCGCCGCTTGGCAATCAAATCAGTATTGTCTTCTAA 350
||||||||||||||||||||||||||.|||||.|||||||||||||||||
BPUM_0103___r 301 TTACCTAAAAAAGTTCGCCGCTTGGCTATCAAGTCAGTATTGTCTTCTAA 350
BSNT_00221___ 351 AGTGATCGACAACAATATCATCGTTCTTGAAGATCTTACTCTTGATACGG 400
|||.|||||||||||.||||||||||||||||||||.|||||||||.|.|
BPUM_0103___r 351 AGTAATCGACAACAACATCATCGTTCTTGAAGATCTGACTCTTGATGCAG 400
BSNT_00221___ 401 CTAAAACAAAAGAAATGGCAGCTATCCTTAAAGGGTTATCTGTTGAGAAA 450
..|||||.||||||.|.||||..|||||||||||.||||||||.|||||.
BPUM_0103___r 401 TGAAAACGAAAGAATTCGCAGGCATCCTTAAAGGATTATCTGTCGAGAAG 450
BSNT_00221___ 451 AAAGCTTTAATCGTAACTGCGGATGCAAACGAAGCAGTAGCATTATCTGC 500
|||||.||.|||||.||||||||||||||||||.||||.||.||||||||
BPUM_0103___r 451 AAAGCGTTGATCGTCACTGCGGATGCAAACGAAACAGTTGCTTTATCTGC 500
BSNT_00221___ 501 TCGTAACATTCCTGGAGTTACTGTTGTTGAAGCTAATGGAATCAACGTTT 550
|||||||||.||||||||.||.||||||||||||||.||.||||||||..
BPUM_0103___r 501 TCGTAACATCCCTGGAGTAACAGTTGTTGAAGCTAACGGTATCAACGTCC 550
BSNT_00221___ 551 TAGACGTTGTCAACCACGAGAAGCTTCTGATTACAAAAGCAGCGGTTGAA 600
|.||||||||||||||||||||.||||||||.||.|||||||||||||||
BPUM_0103___r 551 TTGACGTTGTCAACCACGAGAAACTTCTGATCACTAAAGCAGCGGTTGAA 600
BSNT_00221___ 601 AAAGTAGAGGAGGTGCTTGCATAA 624
|||||||||||||..|||||||||
BPUM_0103___r 601 AAAGTAGAGGAGGGACTTGCATAA 624
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