Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00219 and BPUM_0101

See Amino acid alignment / Visit BSNT_00219 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:10
# Commandline: needle
#    -asequence dna-align/BSNT_00219___rpsJ.1.24716.seq
#    -bsequence dna-align/BPUM_0101___rpsJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00219___rpsJ-BPUM_0101___rpsJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00219___rpsJ-BPUM_0101___rpsJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00219___rpsJ
# 2: BPUM_0101___rpsJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     283/309 (91.6%)
# Similarity:   283/309 (91.6%)
# Gaps:           0/309 ( 0.0%)
# Score: 1311.0
# 
#
#=======================================

BSNT_00219___      1 ATGGCAAAACAAAAAATTCGTATTCGTTTGAAAGCATATGATCATAGAAT     50
                     |||||||||||||||||||||||||||||.||||||||||||||||||||
BPUM_0101___r      1 ATGGCAAAACAAAAAATTCGTATTCGTTTAAAAGCATATGATCATAGAAT     50

BSNT_00219___     51 CCTTGATCAATCTGCAGAGAAGATTGTTGAAACGGCAAAACGTTCTGGTG    100
                     .||||||||||||||.||||||||||||||||||||.||.||||||||||
BPUM_0101___r     51 TCTTGATCAATCTGCTGAGAAGATTGTTGAAACGGCTAAGCGTTCTGGTG    100

BSNT_00219___    101 CCAGCGTATCTGGTCCGATTCCGTTGCCAACTGAAAAATCAGTTTACACA    150
                     |.||.|||||||||||.||.|||.|.||||||||||||||||||||||||
BPUM_0101___r    101 CTAGTGTATCTGGTCCAATCCCGCTTCCAACTGAAAAATCAGTTTACACA    150

BSNT_00219___    151 ATCCTTCGTGCGGTGCACAAATACAAAGATTCTCGTGAGCAATTTGAAAT    200
                     |||||||||||||||||.||.||||||||||||||||||||||||||.||
BPUM_0101___r    151 ATCCTTCGTGCGGTGCATAAGTACAAAGATTCTCGTGAGCAATTTGAGAT    200

BSNT_00219___    201 GCGTACACATAAACGTTTAATCGACATTGTGAACCCAACACCACAAACTG    250
                     ||||||.||.||||||.||||||||||.|||||.|||||.||||||||.|
BPUM_0101___r    201 GCGTACTCACAAACGTCTAATCGACATCGTGAATCCAACTCCACAAACAG    250

BSNT_00219___    251 TTGATGCTCTTATGCGATTAGACTTACCATCTGGTGTCGATATCGAAATT    300
                     |||||||.||||||||.|||||.||||||||||||||.|||||||||||.
BPUM_0101___r    251 TTGATGCACTTATGCGTTTAGATTTACCATCTGGTGTAGATATCGAAATC    300

BSNT_00219___    301 AAACTTTAA    309
                     |||||||||
BPUM_0101___r    301 AAACTTTAA    309


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