Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00206 and BPUM_0090

See Amino acid alignment / Visit BSNT_00206 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:08
# Commandline: needle
#    -asequence dna-align/BSNT_00206___rplL.1.24716.seq
#    -bsequence dna-align/BPUM_0090___rplL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00206___rplL-BPUM_0090___rplL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00206___rplL-BPUM_0090___rplL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00206___rplL
# 2: BPUM_0090___rplL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 372
# Identity:     339/372 (91.1%)
# Similarity:   339/372 (91.1%)
# Gaps:           6/372 ( 1.6%)
# Score: 1574.5
# 
#
#=======================================

BSNT_00206___      1 ATGGCTTTAAATATCGAAGAAATCATTGCTTCCGTTAAAGAAGCAACTGT     50
                     ||||||||||||||||||||||||||||||||.|||||||||||||||||
BPUM_0090___r      1 ATGGCTTTAAATATCGAAGAAATCATTGCTTCAGTTAAAGAAGCAACTGT     50

BSNT_00206___     51 ACTTGAATTGAACGACCTAGTAAAAGCAATCGAAGAAGAATTTGGCGTAA    100
                     ||||||.||.||||||.|||||||||||||||||||||||||||||||||
BPUM_0090___r     51 ACTTGAGTTAAACGACTTAGTAAAAGCAATCGAAGAAGAATTTGGCGTAA    100

BSNT_00206___    101 CTGCTGCTGCTCCTGTAGCTGTAGCTGGCGGAGCTGCTGCAGGCGGAGCT    150
                     ||||||||||||||||||||||||||      |||||||..||.|..|||
BPUM_0090___r    101 CTGCTGCTGCTCCTGTAGCTGTAGCT------GCTGCTGGCGGTGCTGCT    144

BSNT_00206___    151 GCTGAAGAGCAAAGCGAATTCGATCTTATCCTTGCTGGTGCAGGATCTCA    200
                     ||||||||..|||..||.||.|||||..|.|||||||||||.|||...||
BPUM_0090___r    145 GCTGAAGAAAAAACTGATTTTGATCTAGTACTTGCTGGTGCTGGAGACCA    194

BSNT_00206___    201 AAAAATCAAAGTTATCAAAGTTGTACGTGAAATCACTGGTCTTGGCTTGA    250
                     |||||||||||||||||||||.||.|||||||||||||||||||||||.|
BPUM_0090___r    195 AAAAATCAAAGTTATCAAAGTGGTTCGTGAAATCACTGGTCTTGGCTTAA    244

BSNT_00206___    251 AAGAAGCTAAAGAACTTGTTGACAACACTCCAAAACCACTTAAAGAAGGT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BPUM_0090___r    245 AAGAAGCTAAAGAACTTGTTGACAACACTCCAAAACCACTTAAAGAAGGT    294

BSNT_00206___    301 ATTGCTAAAGAAGAAGCTGAAGAGCTTAAAGCTAAACTTGAAGAAGTTGG    350
                     |||||||||||||||||||||||.|||||||||||.||||||||||||||
BPUM_0090___r    295 ATTGCTAAAGAAGAAGCTGAAGAACTTAAAGCTAAGCTTGAAGAAGTTGG    344

BSNT_00206___    351 CGCTTCTGTAGAAGTTAAGTAA    372
                     ||||||||||||||||||||||
BPUM_0090___r    345 CGCTTCTGTAGAAGTTAAGTAA    366


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