Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00200 and BPUM_0086

See Amino acid alignment / Visit BSNT_00200 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:07
# Commandline: needle
#    -asequence dna-align/BSNT_00200___nusG.1.24716.seq
#    -bsequence dna-align/BPUM_0086___nusG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00200___nusG-BPUM_0086___nusG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00200___nusG-BPUM_0086___nusG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00200___nusG
# 2: BPUM_0086___nusG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 535
# Identity:     450/535 (84.1%)
# Similarity:   450/535 (84.1%)
# Gaps:           2/535 ( 0.4%)
# Score: 1898.0
# 
#
#=======================================

BSNT_00200___      1 ATGGAAAAGAATTGGTATGTTGTTCACACGTACTCTGGTTATGAGAATAA     50
                     |||||||||||||||||||||||.||.|||||||||||.|||||.||.||
BPUM_0086___n      1 ATGGAAAAGAATTGGTATGTTGTGCATACGTACTCTGGCTATGAAAACAA     50

BSNT_00200___     51 AGTAAAAGCCAACTTGGAAAAACGTGTTGAATCAATGGGGATGCAGGATA    100
                     |||||||||.|||||||||||.|||||||||||||||||.|||||.||||
BPUM_0086___n     51 AGTAAAAGCGAACTTGGAAAAGCGTGTTGAATCAATGGGCATGCAAGATA    100

BSNT_00200___    101 AAATTTTCCGTGTAGTCGTACCCGAAGAAGAAGAAACGGATATCAAAAAC    150
                     |.||.|||||.||.||||||||.||||||||||||||.||.||.|||||.
BPUM_0086___n    101 AGATCTTCCGCGTTGTCGTACCAGAAGAAGAAGAAACAGACATTAAAAAT    150

BSNT_00200___    151 GGCAAGAAAAAAGTCGTGAAAAAGAAAGTGTTCCCTGGTTATGTGCTTGT    200
                     ||.|||||||||||.||.|||||||||||.||||||||.|||||.||.||
BPUM_0086___n    151 GGTAAGAAAAAAGTTGTCAAAAAGAAAGTATTCCCTGGCTATGTCCTAGT    200

BSNT_00200___    201 TGAAATTGTAATGACAGACGACTCTTGGTATGTTGTCCGAAACACGCCGG    250
                     .|||||.||.|||||.|||||||||||||||||.||.||.|||||.||.|
BPUM_0086___n    201 GGAAATCGTGATGACTGACGACTCTTGGTATGTAGTTCGTAACACACCAG    250

BSNT_00200___    251 GCGTTACTGGATTCGTAGGATCTGCCGGGTCAGGTTCAAAACCGAC-GCC    299
                     |.||.||.||.|||||.|||||.||.||.|||||.|||||.||||| |||
BPUM_0086___n    251 GTGTCACAGGGTTCGTTGGATCAGCTGGATCAGGCTCAAAGCCGACAGCC    300

BSNT_00200___    300 GCTTCTTCCGGGCGAAGCAGAAACCATTCTGAAGAGAATGGGCATGGATG    349
                      ||.||.||.||||||||.|||||||||||||||||||||||..|.||.|
BPUM_0086___n    301 -CTACTACCAGGCGAAGCTGAAACCATTCTGAAGAGAATGGGTCTTGAAG    349

BSNT_00200___    350 AACGCAAAACTGATATTGACTTTGAACTGAAAGAGACAGTGAAAGTAATA    399
                     ||||||||||.||.||.|||||||||.|||||||.|||||.||.||.||.
BPUM_0086___n    350 AACGCAAAACAGAAATCGACTTTGAATTGAAAGAAACAGTCAAGGTCATC    399

BSNT_00200___    400 GACGGACCTTTTGCTAACTTTACAGGATCAATTGAAGAGATTGATTATGA    449
                     ||||||||.|||||||||||.|||||.||.||.||||||||||||||.||
BPUM_0086___n    400 GACGGACCATTTGCTAACTTCACAGGCTCTATCGAAGAGATTGATTACGA    449

BSNT_00200___    450 TAAAAGCAAGGTCAAAGTTTTCGTTAATATGTTCGGCCGTGAAACGCCGG    499
                     |||||||||.||||||||.||.|||||||||||.||..|.|||||.||.|
BPUM_0086___n    450 TAAAAGCAAAGTCAAAGTATTTGTTAATATGTTTGGTAGAGAAACACCCG    499

BSNT_00200___    500 TTGAGCTGGAATTTACCCAAATCGATAAATTGTAA    534
                     |.||.||.||.||.||.||.|||||||||||||||
BPUM_0086___n    500 TGGAACTTGAGTTCACGCAGATCGATAAATTGTAA    534


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