Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00193 and BPUM_0079
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:07
# Commandline: needle
# -asequence dna-align/BSNT_00193___cysS.1.24716.seq
# -bsequence dna-align/BPUM_0079___cysS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00193___cysS-BPUM_0079___cysS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00193___cysS-BPUM_0079___cysS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00193___cysS
# 2: BPUM_0079___cysS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1451
# Identity: 1058/1451 (72.9%)
# Similarity: 1058/1451 (72.9%)
# Gaps: 100/1451 ( 6.9%)
# Score: 3821.0
#
#
#=======================================
BSNT_00193___ 1 ATGACAATCACACTTTATAATACATTGAC----TAGACAGAAGGAAACAT 46
||||||||||...|||||||||||||||| .|||.|| |||| ||
BPUM_0079___c 1 ATGACAATCAATATTTATAATACATTGACACGTAAGAAAG-AGGA---AT 46
BSNT_00193___ 47 TCGTTCCTCTTGAAGAGGGAAAAGTGAAAATGTATGTATGCGGACCCACG 96
||||.||.|||||....|||||.||.||.||||||||.||||||||.||.
BPUM_0079___c 47 TCGTCCCGCTTGAGCCAGGAAAGGTCAAGATGTATGTGTGCGGACCAACC 96
BSNT_00193___ 97 GTTTACAATTACATTCATATCGGGAACGCGCGTCCGGCAATCGTTTACGA 146
|||||.||.|||||||||||||||||.||..|.||.||.||.|||||.||
BPUM_0079___c 97 GTTTATAACTACATTCATATCGGGAATGCAAGACCTGCTATTGTTTATGA 146
BSNT_00193___ 147 TACGGTTCGAAACTATTTAGAGTATAAAGGCTATGATGTGCAGTATGTCT 196
.||.||.||.||.||||||||.||.|..||||||||||||.|.|.|||||
BPUM_0079___c 147 CACTGTACGTAAGTATTTAGAATACAGCGGCTATGATGTGAACTTTGTCT 196
BSNT_00193___ 197 CTAACTTCACAGACGTAGACGATAAATTAATTAAAGCGGCAAATGAACTC 246
|.|||||.|||||.||.||.||||||.|.||.|||||.||.|||||||||
BPUM_0079___c 197 CAAACTTTACAGATGTGGATGATAAACTCATCAAAGCAGCCAATGAACTC 246
BSNT_00193___ 247 GGTGAGGATGTACCCACCATTTCAGAGCGTTTTATTAAAGCATACTTTGA 296
||.||.|||||.||.||.|||.|.||.||.|||||..||||.||||||||
BPUM_0079___c 247 GGAGAAGATGTTCCGACGATTGCTGACCGCTTTATCCAAGCCTACTTTGA 296
BSNT_00193___ 297 AGACGTAGGTGCGCTCGGCTGCCGAAAAGCCGACCTTCATCCGCGAGTAA 346
||||||..||||.||.||.|||..||||||.||.|||||.||.||.||.|
BPUM_0079___c 297 AGACGTCAGTGCACTAGGTTGCAAAAAAGCTGATCTTCACCCACGCGTGA 346
BSNT_00193___ 347 TGGAGAACATGGATGCCATTATCGAATTCGTAGATCAGCTCGTGA----- 391
.|||.||.|||||||..||.||.|.|||..|.|| ||
BPUM_0079___c 347 CGGAAAATATGGATGATATCATTGCATTTATTGA---------GACATTA 387
BSNT_00193___ 392 ----AAAAGGGCTACGCATATGAATCAGAAGGTGACGTATATTTCAAAAC 437
|||||||||||||.||||||.||||.||||||||.||||.||..||
BPUM_0079___c 388 ATAGAAAAGGGCTACGCCTATGAAGCAGATGGTGACGTGTATTACAGCAC 437
BSNT_00193___ 438 CAGAGCGTTTGAAGGGTACGGAAAGCTTTCTCAGCAATCAATCGATGAAC 487
..|..|.||||||||.|||||||||||||||||.||.||.||.|||||||
BPUM_0079___c 438 ACGCTCATTTGAAGGCTACGGAAAGCTTTCTCACCAGTCGATTGATGAAC 487
BSNT_00193___ 488 T-AAGATCAGGTGCACGCATCCGGGTCGGCGAGAAAAAAGAAGATGCTCT 536
| |||| |||||||.||.||.||.||.||.|||||.|||..||||||.||
BPUM_0079___c 488 TGAAGA-CAGGTGCCCGTATTCGTGTAGGTGAGAAGAAACGAGATGCGCT 536
BSNT_00193___ 537 TGATTTCGCACTGTGGAAAGCGGCAAAAGAA-GGAGAAATCTCTTGGGAT 585
.||.||.||..|.|||||.||.|| |||||| ..|||||||||.||||||
BPUM_0079___c 537 GGACTTTGCTTTATGGAAGGCTGC-AAAGAACCAAGAAATCTCATGGGAT 585
BSNT_00193___ 586 AGCCCTTGGGGGAAAGGACGTCCGGGCTGGCACATTGAATGCTCAGCAAT 635
|||||.|||||..||||||||||.||||||||||||||||||||.||.||
BPUM_0079___c 586 AGCCCGTGGGGCGAAGGACGTCCAGGCTGGCACATTGAATGCTCGGCCAT 635
BSNT_00193___ 636 GGTGAAAAAGTATCTCGGTGA-CCAGATTGATATCCATGCGGGCGGACAG 684
|||.|||||.|||.|.||||| .|| ||.|||||.|||||.|||||||||
BPUM_0079___c 636 GGTTAAAAAATATTTAGGTGATACA-ATCGATATTCATGCAGGCGGACAG 684
BSNT_00193___ 685 GATTTAACATTCCCTCACCATGAAAACGAAATTGCGCAATCTGAGGCGCT 734
||||||||.|||||||||||||||||.|||||.||.|||||||||||..|
BPUM_0079___c 685 GATTTAACCTTCCCTCACCATGAAAATGAAATCGCTCAATCTGAGGCTTT 734
BSNT_00193___ 735 GACAGGCAAAACGTTTGCGAAGTACTGGCTTCATAATGGTTATATCAATA 784
||||||||||.|.||||||||.||.|||.|.|||||.||.|||||.||||
BPUM_0079___c 735 GACAGGCAAACCATTTGCGAAATATTGGATGCATAACGGATATATTAATA 784
BSNT_00193___ 785 TTGATAATGAAAAAATGTCAAAATCACTAGGCAACTTTGTGCTTGTCCAT 834
||||.|||||.|||||||||||||||||.|||||||||||||||||.|||
BPUM_0079___c 785 TTGAGAATGAGAAAATGTCAAAATCACTTGGCAACTTTGTGCTTGTGCAT 834
BSNT_00193___ 835 GACATCATTAAACAGCATGATCCGCA---GCTTTTGAGATTCTTTATGCT 881
|||||..|.|||.|.||.|||||..| |||| .|||||||||||.|
BPUM_0079___c 835 GACATTGTAAAAGAACAAGATCCTGATGTGCTT---CGATTCTTTATGTT 881
BSNT_00193___ 882 ATCTGTTCATTATCGCCATCCGATTAACTATTCAGAAGAGCTTCTGGAGA 931
.||.|||||.||.||.|||||.||||||||.|||...||..|.||.||||
BPUM_0079___c 882 GTCGGTTCACTACCGTCATCCAATTAACTACTCAATGGATTTACTAGAGA 931
BSNT_00193___ 932 ATACGAAAAGCGCGTTCAACCGCTTAAAAACAGCGTACAGC-AATCTTCA 980
.|||.||.||.|||||.|||||..|.|||||..|.|| .|| |||.|.||
BPUM_0079___c 932 GTACAAAGAGTGCGTTTAACCGACTCAAAACGTCTTA-TGCTAATTTACA 980
BSNT_00193___ 981 GCACCGTCTTAACAGCAGTACGAATTTAACCGAAGATGACGATCAATGGC 1030
.||.||.|||.|.|||||.||||||.|.||.|||||..|.|.|.|||||.
BPUM_0079___c 981 TCATCGCCTTGAAAGCAGCACGAATATCACAGAAGACAATGCTAAATGGT 1030
BSNT_00193___ 1031 TTGAAAAAGTTGAAGAACACCGCAAAG-----CATT------CGAAGAAG 1069
|.|..||.|||||||| |||.|| |||| .|||
BPUM_0079___c 1031 TGGCGAAGGTTGAAGA-----GCAGAGAGCGACATTTATTTCTGAA---- 1071
BSNT_00193___ 1070 CGATGGACGATGATTTTAATACGGCGAATGCCATTTCAGTCTTGTTTG-A 1118
|||.|.|||||.||.||||||||.|||||.|||||.||.||.||.| |
BPUM_0079___c 1072 --ATGAATGATGACTTCAATACGGCAAATGCGATTTCTGTTTTATTCGAA 1119
BSNT_00193___ 1119 CTTAGCGAAACACGCCAATTATTATCTTCAGAAAGATCATACGGCTGATC 1168
||| ||||||||.||.|||||||||.|..|.||.||||||||..|.||..
BPUM_0079___c 1120 CTT-GCGAAACAGGCGAATTATTATATGGAAAATGATCATACTTCGGAGG 1168
BSNT_00193___ 1169 ATGTGATTACGGCGTTTATTGAGATGTTTGACCGCATTGTT--------- 1209
|.|||||.|.|||.||||| ||..|||||
BPUM_0079___c 1169 AAGTGATCAAGGCATTTAT-------------CGGCTTGTTCCAAGAAAT 1205
BSNT_00193___ 1210 ----TCTGTCCTCGGTTTTTCGTTGGGTGAGCAGGAA--CTT---CTCGA 1250
||||||||.||.||.||.|| ||.||.|| |.| ||.||
BPUM_0079___c 1206 CACGTCTGTCCTTGGCTTCTCATT-----AGAAGAAAAGCATACGCTTGA 1250
BSNT_00193___ 1251 TCAAGAGATTGAAGACTTAATCGAAAAGCGAAATGAAGCGCGCCGGAATC 1300
..||||..|.||||..|||||.|||.|.||.|||||.||..|..|.||||
BPUM_0079___c 1251 AAAAGAAGTAGAAGCGTTAATTGAACAACGCAATGAGGCTAGAAGAAATC 1300
BSNT_00193___ 1301 GCGATTTTGCATTGTCAGACCAGATCCGCGACCAGCTGAAAAGCATGAAT 1350
|.||||||||..|.||.||.||.||.||.||||||.|.||.|||||||||
BPUM_0079___c 1301 GTGATTTTGCGCTATCTGATCAAATTCGTGACCAGTTAAAGAGCATGAAT 1350
BSNT_00193___ 1351 ATCATTCTTGAAGATACGGCTCAAGGCACTCGCTGGAAACGGGGAGAATA 1400
||..|..|.||.||.||..|||||||.||||||||||||.|.||||||||
BPUM_0079___c 1351 ATTGTATTGGAGGACACTCCTCAAGGTACTCGCTGGAAAAGAGGAGAATA 1400
BSNT_00193___ 1401 A 1401
.
BPUM_0079___c 1401 G 1401
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