Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00187 and BPUM_0077
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:07
# Commandline: needle
# -asequence dna-align/BSNT_00187___gltX.1.24716.seq
# -bsequence dna-align/BPUM_0077___gltX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00187___gltX-BPUM_0077___gltX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00187___gltX-BPUM_0077___gltX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00187___gltX
# 2: BPUM_0077___gltX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1473
# Identity: 1140/1473 (77.4%)
# Similarity: 1140/1473 (77.4%)
# Gaps: 42/1473 ( 2.9%)
# Score: 4296.5
#
#
#=======================================
BSNT_00187___ 1 ATGGGAAACGAAGTACGCGTCCGTTATGCACCGAGTCCAACCGGACATTT 50
||||||||.|||||.||.||.||||||||||||||||||||.||.|||||
BPUM_0077___g 1 ATGGGAAATGAAGTGCGTGTTCGTTATGCACCGAGTCCAACTGGTCATTT 50
BSNT_00187___ 51 GCATATTGGAAATGCCAGAACGGCGCTTTTTAATTATTTATTTGCCCGCA 100
.||||||||.|||||.||||||||.|||||.||.|||||.||.||.||||
BPUM_0077___g 51 ACATATTGGGAATGCTAGAACGGCTCTTTTCAACTATTTGTTCGCACGCA 100
BSNT_00187___ 101 ATCAAGGCGGTAAGTTTATCATTCGAGTTGAGGATACAGATAAAAAGCGC 150
.|||||||||.||.|||||.||||||.|.||.|||||.|||.|||||||.
BPUM_0077___g 101 GTCAAGGCGGCAAATTTATTATTCGAATCGAAGATACGGATCAAAAGCGT 150
BSNT_00187___ 151 AATATTGAGGGCGGAGAACAAAGCCAGCTGAATT----ATCTGAAGTGGC 196
|||.|.||.|||||||||.||||||||| || |.|||.|.||||
BPUM_0077___g 151 AATGTAGAAGGCGGAGAAGAAAGCCAGC----TTCGCCACCTGCAATGGC 196
BSNT_00187___ 197 TAGGTATTGACTGGGATGAGAGTGTGGATGTCGGAGGAGAGTACGGCCCA 246
|.||||||||.|||||||||||..|.|||...|..||.|..|||||.||.
BPUM_0077___g 197 TCGGTATTGATTGGGATGAGAGCATTGATAAAGATGGTGGCTACGGTCCT 246
BSNT_00187___ 247 TACCGTCAGTCAGAGCGTAACGATATCTATAAAGTGTACTATGAAGAGCT 296
|||.|.||.|||||||||||.|||||.||||||..|||.|||||.|||||
BPUM_0077___g 247 TACAGACAATCAGAGCGTAATGATATTTATAAAAAGTATTATGATGAGCT 296
BSNT_00187___ 297 TCTTGAAAAAGGGCTT-GCTTATAAATGTTACTGTACGGAAGAAGAGCTT 345
.||.| |.||||.||| ||.|||||.||.||.|||||||..||||||||.
BPUM_0077___g 297 GCTAG-AGAAGGACTTGGCGTATAAGTGCTATTGTACGGCTGAAGAGCTA 345
BSNT_00187___ 346 GAAAAAGAGCGTGAAGAACAGATTGCCCGCGGAGAAATGCCTCGTTATTC 395
||..||||||||||||.|||.||.||||||.|.|||||||||||.|||||
BPUM_0077___g 346 GAGGAAGAGCGTGAAGCACAAATCGCCCGCAGTGAAATGCCTCGATATTC 395
BSNT_00187___ 396 TGGAAAACACAGAGACCTGACTCAGGAAGAACAGGAGAAATTTATCGCTG 445
|||.|||..|||..|..|..|..|.||||||.||||.||..|.|||||||
BPUM_0077___g 396 TGGTAAATGCAGTCATTTATCGAAAGAAGAAGAGGACAAGCTAATCGCTG 445
BSNT_00187___ 446 AAGGCAGAAAACCAAGTATTCGTTTCCGCGTGCCGGAAGGAAAAATCATC 495
||||.|||.|.||||||||.||.|||||.|||||..|||||.||||||||
BPUM_0077___g 446 AAGGAAGAGAGCCAAGTATCCGCTTCCGTGTGCCAAAAGGAGAAATCATC 495
BSNT_00187___ 496 GCCTTCAATGATATCGTAAAAGGCGAAATTTCTTTTGAATCAGATGGCAT 545
...||..|.||.||.||.||||||||||||||.|||||..||||.|||||
BPUM_0077___g 496 AAATTTGACGACATGGTCAAAGGCGAAATTTCATTTGAGACAGACGGCAT 545
BSNT_00187___ 546 CGGCGACTTTGTTATTGTGAAAAAGGACGGAACGCCGACTTACAACTTCG 595
|||.||||||||.||||||||.||.||.||.|||||||||||.|||||||
BPUM_0077___g 546 CGGTGACTTTGTCATTGTGAAGAAAGATGGTACGCCGACTTATAACTTCG 595
BSNT_00187___ 596 CGGTAGCGATTGATGACTACTTAATGAAAATGACACACGTGCTGCGCGGT 645
|.|||||..|.|||||..|.||.|||||.|||||.|||.|.||.|||||.
BPUM_0077___g 596 CTGTAGCAGTGGATGATCATTTGATGAAGATGACTCACATTCTCCGCGGA 645
BSNT_00187___ 646 GAGGATCATATTTCTAACACACCGAAACAGATTATGATTTATCAA-GCAT 694
||||||||.|||||.||.||.||.|||||.||.|||||.| |||| ||||
BPUM_0077___g 646 GAGGATCACATTTCGAATACGCCTAAACAAATCATGATCT-TCAATGCAT 694
BSNT_00187___ 695 TCGGATGGGATATTCCTCAGTTCGGACACATGACGCTGATTGTAAACGAA 744
|.||.||||||.||||.|..||.|||||.||||||||||||||.|||||.
BPUM_0077___g 695 TTGGCTGGGATGTTCCGCTATTTGGACATATGACGCTGATTGTGAACGAG 744
BSNT_00187___ 745 AGCCGTAAAAAGCTCAGTAAACGTGATGAATCCATTATTCAATTCATCGA 794
|.|||.||.||..|.||.||.|||||||||||||||||||||||||||||
BPUM_0077___g 745 AACCGCAAGAAATTAAGCAAGCGTGATGAATCCATTATTCAATTCATCGA 794
BSNT_00187___ 795 GCAGTACAAAGAGCTT-GGCTACCTGCCAGAAGCGCTGTTCAACTTTATC 843
|||.||.||| |.||| |||||..|.||||||||.|||||||||||.||.
BPUM_0077___g 795 GCAATATAAA-AACTTGGGCTATTTACCAGAAGCCCTGTTCAACTTCATT 843
BSNT_00187___ 844 GGACTGCTAGGCTGGTCACCGGTTGGAGAAGAAGAGCTTTTCACAAAAGA 893
|.|||.||.||.|||||.||.||.||.||||||||.||.||.||.|||||
BPUM_0077___g 844 GCACTACTTGGATGGTCTCCAGTGGGCGAAGAAGAACTGTTTACGAAAGA 893
BSNT_00187___ 894 GCAGTTTATTGAAATTTTTGATGTAAATCGTTTATCTAAATCACCAGCTT 943
|||.||.||.||.|||||.|||||.||.||..|.|||||.|||||||||.
BPUM_0077___g 894 GCAATTCATCGACATTTTCGATGTGAACCGACTTTCTAAGTCACCAGCTC 943
BSNT_00187___ 944 TGTTTGATATGCATAAGCTAAAATGGGTTAACAACCAATATGTGAAGAAG 993
|.||.|||||||||||.|||||||||||.||.||||||||.|||| |||
BPUM_0077___g 944 TATTCGATATGCATAAACTAAAATGGGTAAATAACCAATACGTGA--AAG 991
BSNT_00187___ 994 --CTGGATCTTGATCAGGTTGTTGAACTGACGCTTCCGCATTTGCAAAAA 1041
||.|||||||||||||||||||..||.||.|||||.|||.|.||||||
BPUM_0077___g 992 CACTTGATCTTGATCAGGTTGTTGCGCTAACACTTCCACATCTTCAAAAA 1041
BSNT_00187___ 1042 GCGGGCAAAGT---TG-GCACTGAGCTTTCTGCTGAAGAACAAGA-GTGG 1086
||.|||||||| || || ||||.||.|.|||| ||.||.| ||||
BPUM_0077___g 1042 GCAGGCAAAGTAAGTGAGC----AGCTGTCAGATGAA-AAAAACACGTGG 1086
BSNT_00187___ 1087 GTTCGTAAACTGATTTCCCTGTATCATGAGCAATTAAGCTACGGTGCGGA 1136
||.||.||.||||||.|.|||||||||||.|||||||||||.||.||.||
BPUM_0077___g 1087 GTGCGCAAGCTGATTGCTCTGTATCATGAACAATTAAGCTATGGAGCAGA 1136
BSNT_00187___ 1137 AATTGTTGAGCTGACTGATTTGTTCTTTACGGATGAGATCGAGTATAATC 1186
||||||||||.|.||.||.||||||||||.|||..|.||.||||||||||
BPUM_0077___g 1137 AATTGTTGAGTTAACAGAGTTGTTCTTTAAGGAGCAAATTGAGTATAATC 1186
BSNT_00187___ 1187 AAGAAGCGAAAGCTGTTCTGGAAGAAGAACAGGTTCCTGAAGTGCTCA-- 1234
||||.||.||.|..|||||.|.|||.||.||.||.||.|||| |||
BPUM_0077___g 1187 AAGAGGCAAAGGAAGTTCTAGCAGAGGAGCAAGTACCAGAAG---TCATG 1233
BSNT_00187___ 1235 GCA-CATTCGCAGCGAAGCTTGAA-GAGCTTGAGGAGTTCACTCCGGATA 1282
||| ||||.||.|...|||||||| || ||||||...|||||.||.|||.
BPUM_0077___g 1234 GCATCATTTGCTGGTCAGCTTGAACGA-CTTGAGTCTTTCACACCTGATG 1282
BSNT_00187___ 1283 ACATCAAAGCATCAATCAAAGCAGTGCAGAAAGAAACTGGCCATAAAGGG 1332
|.|||||.||..|.||.|||||.||.||.||||||||.||.||||||||.
BPUM_0077___g 1283 AAATCAAGGCGGCTATTAAAGCGGTCCAAAAAGAAACAGGGCATAAAGGC 1332
BSNT_00187___ 1333 AAAAAACTGTTTATGCCGATTCGTGTTGCTGTAACAGGGCAAACTCACGG 1382
||.|||||.||.|||||.||||||||.|||||.|||||.|||||.|||||
BPUM_0077___g 1333 AAGAAACTATTCATGCCAATTCGTGTGGCTGTCACAGGACAAACGCACGG 1382
BSNT_00187___ 1383 TCCGGAACTGCCGCAATCAATTGAATTGATCGGTAAAGAGACTGCAATT- 1431
|||.|||||.||||||...||||||.|..|.||||||||.|| |..|||
BPUM_0077___g 1383 TCCAGAACTTCCGCAAAGTATTGAACTACTAGGTAAAGAAAC-GGTATTA 1431
BSNT_00187___ 1432 --CAGCGTTTAAAAAATATCTAA 1452
|.||.||.||.||||| |||
BPUM_0077___g 1432 AACCGCATTAAACAAATA--TAA 1452
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