Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00176 and BPUM_0070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:06
# Commandline: needle
# -asequence dna-align/BSNT_00176___mcsB.1.24716.seq
# -bsequence dna-align/BPUM_0070___mcsB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00176___mcsB-BPUM_0070___mcsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00176___mcsB-BPUM_0070___mcsB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00176___mcsB
# 2: BPUM_0070___mcsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1115
# Identity: 850/1115 (76.2%)
# Similarity: 850/1115 (76.2%)
# Gaps: 46/1115 ( 4.1%)
# Score: 3151.5
#
#
#=======================================
BSNT_00176___ 1 ATGTCGCTAAAGCATTTTATTCAGGACGCACTAAG-CAGTTGGATGAAGC 49
||||||||..|||||||||||||.|||||..|||| || .||||||||.|
BPUM_0070___m 1 ATGTCGCTCCAGCATTTTATTCAAGACGCTTTAAGTCA-ATGGATGAAAC 49
BSNT_00176___ 50 AGAAAGGACCTGAAAGTGACATTGTACTCAGCAGCCGCATACGTTTAGCA 99
|.||||||||.||||||||||||||.||.|||||.||.||..|..|||||
BPUM_0070___m 50 AAAAAGGACCCGAAAGTGACATTGTTCTAAGCAGTCGAATCAGGCTAGCA 99
BSNT_00176___ 100 AGGAACTTTGAGCATATTCGGTTCCCTACGCGGTATTCCAATGAAGAAGC 149
.|.|||.|.||||||.||||.|||||.||.|.||.|||..|.|||| ||.
BPUM_0070___m 100 CGCAACCTAGAGCATGTTCGTTTCCCAACTCAGTTTTCTCAGGAAG-AGG 148
BSNT_00176___ 150 CTCA------TCCATCATACAGCAATTTGAAGATCAGTTTTCAGAGCAAG 193
|||| || |.||||||||.||..|..|||||.| .|||.||
BPUM_0070___m 149 CTCAAGCTGTTC-----TCCAGCAATTCGAGCAAAAGTTTGC-TAGCCAG 192
BSNT_00176___ 194 AAATTCCCGGA-ATCGGCAAATTTGTTTTGATTAGAATGAATGATGCACA 242
.||.|...||| |||||.||.||||||.|.|||.||||||||||..|.||
BPUM_0070___m 193 GAAGTGAAGGACATCGGAAACTTTGTTCTAATTCGAATGAATGAAACGCA 242
BSNT_00176___ 243 GCCTTTAGAGAAGCGTGTACTTGTTGAAAAACATCTAATCAGTCCGAATC 292
||||||||..|||.|.||||||||||||||.|||.|.||||| ||.||.|
BPUM_0070___m 243 GCCTTTAGCAAAGAGGGTACTTGTTGAAAAGCATTTGATCAG-CCCAAAC 291
BSNT_00176___ 293 TGA-CAGAGTCTCCTTTTGGCGGCTGTTTGCTTTCTGAAAATGAGGAAGT 341
|.| ||||.||....||||||||.||||||||.|||||||||||||||.|
BPUM_0070___m 292 TTAGCAGAATCAAGATTTGGCGGTTGTTTGCTGTCTGAAAATGAGGAAAT 341
BSNT_00176___ 342 AAGCGTCATGCTAAATGAAGAGGACCATATTAGAATTCAGTGTCTT-TTC 390
.||.||.|||||.||||||||.|||||||||.|.||.||.|| ||| |||
BPUM_0070___m 342 CAGTGTGATGCTGAATGAAGAAGACCATATTCGGATCCAATG-CTTATTC 390
BSNT_00176___ 391 CCTGGATTTCAGCTTTTAG---AAGCAATGAAAGCCGCAAACCAGGTCGA 437
||.|||||.||.| ||| |.|||.|.|||||.||.||||||.|.||
BPUM_0070___m 391 CCAGGATTCCAAC---TAGCCAATGCATTAAAAGCAGCTAACCAGATAGA 437
BSNT_00176___ 438 CGACTGGATCGAAGAAAAAGTTGATTATGCATTCAATGAGCAAA--GAGG 485
.||||||||.||.||..||||.|||||||||||...||| ||| ||||
BPUM_0070___m 438 TGACTGGATTGAGGAGCAAGTGGATTATGCATTTTCTGA--AAAGCGAGG 485
BSNT_00176___ 486 ATACTTAACCAGCTGTCCTACAAACGTAGGTACAGGTTTAAGGGCTTCGG 535
|||||||||.||||||||.||.||.||||||||||||.|.|||||.||.|
BPUM_0070___m 486 ATACTTAACAAGCTGTCCAACGAATGTAGGTACAGGTATTAGGGCATCAG 535
BSNT_00176___ 536 TCATGATGCATCTGCCGGCACTGGTTTTA------ACTAGGCAAATAAAT 579
|||||||||||.|.||.|| |||| ||.||.|||||.|||
BPUM_0070___m 536 TCATGATGCATTTACCCGC------TTTAGCCCTCACAAGACAAATGAAT 579
BSNT_00176___ 580 CGAATTATACCGGCAATTAATCAATTAGG-CTTAGTTGTTAGAGGAATTT 628
||.|||||.||.||.|||||||||||||| ||| ||.||.||||||||||
BPUM_0070___m 580 CGGATTATTCCTGCGATTAATCAATTAGGTCTT-GTAGTCAGAGGAATTT 628
BSNT_00176___ 629 ATGGGGAAGGCAGCGAAGCAGTAGGGAATATCTTTCAAATTTCAAATCAG 678
||||.|||||||||||||||.|||||||.||||||||||||||||||||.
BPUM_0070___m 629 ATGGTGAAGGCAGCGAAGCAATAGGGAACATCTTTCAAATTTCAAATCAA 678
BSNT_00176___ 679 ATCACGCTTGGTAAGTCAGAGCAGGATATTGTAGAGGATCTTAACAGTGT 728
||.||.||||||.|.|||||..|.|||||||||||.|||.|.||.||.||
BPUM_0070___m 679 ATGACACTTGGTCAATCAGAAGAAGATATTGTAGATGATTTAAATAGCGT 728
BSNT_00176___ 729 TGCTGCTCAGTTGATTGAACAAGAACGATCTGCCCGAGAAGCGATTTATC 778
..|.||.|||.|.|||||||||||.||||||||.|||.|||||.|.||||
BPUM_0070___m 729 GACCGCGCAGCTTATTGAACAAGAGCGATCTGCACGAAAAGCGTTATATC 778
BSNT_00176___ 779 AAACTTCTAAAATCGAACTTGAGGATCGGGTATATCGGT-CTTATGGGGT 827
||||.|||||.||.|||||||||||..|.||.||.|||| |||| |||.|
BPUM_0070___m 779 AAACATCTAAGATTGAACTTGAGGACAGAGTGTACCGGTCCTTA-GGGAT 827
BSNT_00176___ 828 CTTGTCTAATTGCCGGATGATAGAATCGAAAGAAACTGCAAAGTGCCTTT 877
.|||||.|||||.||.|||||.|||||.||.|||||.|||||.||.||.|
BPUM_0070___m 828 TTTGTCCAATTGTCGCATGATTGAATCAAAGGAAACAGCAAAATGTCTGT 877
BSNT_00176___ 878 CAGATGTTCGGTTAGGCATAGACCTAGGCATTATAAAAGGACTTTCAAGC 927
|||||||.||..|.||.||.||..||||.||.||.||.||.||||||||.
BPUM_0070___m 878 CAGATGTGCGCCTTGGAATTGATTTAGGTATCATTAAGGGGCTTTCAAGT 927
BSNT_00176___ 928 AACATACTTAACGAACTTATGATTTTGACGCAGCCAGGATTTTTACAGCA 977
||.|||||.||.|||||.|||||||||||.|||||.||.|||.|.||.||
BPUM_0070___m 928 AATATACTGAATGAACTCATGATTTTGACACAGCCTGGCTTTCTTCAACA 977
BSNT_00176___ 978 ATACTCGGGAGGCGCTTTGCGTCCGAACGAAAGGGACATTCGAAGAGCGG 1027
|||.||.|||||.||||||...||.||.|||.|.|||||...|.||||.|
BPUM_0070___m 978 ATATTCTGGAGGAGCTTTGGAGCCAAATGAACGAGACATAAAACGAGCAG 1027
BSNT_00176___ 1028 CTCTCATCAGAGAACGGCTTCACTTAGAAATGAATGGGAAAAGACAGGAG 1077
|..|.||.||||||.|.||.|..|||||||||.||.||||..||||||||
BPUM_0070___m 1028 CAATTATTAGAGAAAGACTGCGTTTAGAAATGCATAGGAATGGACAGGAG 1077
BSNT_00176___ 1078 GATGAATCGATATGA 1092
||||||.||||||||
BPUM_0070___m 1078 GATGAAACGATATGA 1092
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