Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00174 and BPUM_0068

See Amino acid alignment / Visit BSNT_00174 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:05
# Commandline: needle
#    -asequence dna-align/BSNT_00174___ctsR.1.24716.seq
#    -bsequence dna-align/BPUM_0068___ctsR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00174___ctsR-BPUM_0068___ctsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00174___ctsR-BPUM_0068___ctsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00174___ctsR
# 2: BPUM_0068___ctsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity:     360/468 (76.9%)
# Similarity:   360/468 (76.9%)
# Gaps:           6/468 ( 1.3%)
# Score: 1351.0
# 
#
#=======================================

BSNT_00174___      1 GTGGGACATAATATTTCTGACATCATTGAACAATATTTAAAACGAGTGTT     50
                     ||||.|||.|||||||||||.|||||.||.||.|||||.|||..|||.||
BPUM_0068___c      1 GTGGCACAAAATATTTCTGATATCATCGAGCAGTATTTGAAAGAAGTCTT     50

BSNT_00174___     51 AGATCAAAATGG-CAAGGAAATTTTAGAGATTAAACGAAGTGAAATTGCA     99
                     .|||||.||||| |.| |||||.|||||.|||||.||.|.||||||||||
BPUM_0068___c     51 GGATCAGAATGGTCGA-GAAATATTAGAAATTAAGCGCAATGAAATTGCA     99

BSNT_00174___    100 GATAAATTTCAATGCGTTCCTTCCCAAATAAATTATGTCATCAACACCAG    149
                     |||||.|||||||||||.|||||.|||||.||.|||||.|||||.||..|
BPUM_0068___c    100 GATAAGTTTCAATGCGTACCTTCACAAATTAACTATGTTATCAATACACG    149

BSNT_00174___    150 ATTTACAAGCGAAAGAGGATATATTGTTGAGAGCAAACGCGGGGGCGGCG    199
                     .|||||.|||||.|||||.||.||.|||||.||.||.||.||.|||||.|
BPUM_0068___c    150 CTTTACGAGCGAGAGAGGCTACATCGTTGAAAGTAAGCGTGGCGGCGGTG    199

BSNT_00174___    200 GTTACATCAGAATCATTAAAATTAAAATGAACAATGAAGTTGTCCTGATC    249
                     |.||.|||.|.|||||||||.|.||||||||..|||||||.|.|.|..|.
BPUM_0068___c    200 GCTATATCCGCATCATTAAAGTCAAAATGAATGATGAAGTCGACTTATTG    249

BSNT_00174___    250 AATAATATAATTTCTCAAATTAATACC--CATTTGTCTCAAGCAGCCTCT    297
                     ||.|||||.|||||.|||||  |||.|  |.|||.||.||.||.||||||
BPUM_0068___c    250 AACAATATTATTTCCCAAAT--ATATCATCGTTTATCACAGGCTGCCTCT    297

BSNT_00174___    298 GATGACATTATTTTAAGGCTATTAGAAGACAAGGTAATTTCAGAAAGAGA    347
                     |||.|.||.||..|..|.||..|.|||.|.||..|..|.||.||||||||
BPUM_0068___c    298 GATCATATCATCATGCGTCTTGTCGAAAATAACATTTTATCTGAAAGAGA    347

BSNT_00174___    348 AGCAAAAATGATGGTCAGTGTAATGGACCGCTCAGTTTTACACATTGACT    397
                     ||||||.||||||.|||||||.||||||||.||.|||||.||||||||.|
BPUM_0068___c    348 AGCAAAGATGATGATCAGTGTCATGGACCGTTCTGTTTTGCACATTGATT    397

BSNT_00174___    398 TACCTGAACGTGATGAATTAAGAGCGAGAATGATGAAGGCAATGCTGACT    447
                     |||||||||||||||||||..|.||..|.||||||||.||.|||.|.|.|
BPUM_0068___c    398 TACCTGAACGTGATGAATTGCGGGCTCGGATGATGAAAGCGATGTTAAAT    447

BSNT_00174___    448 TCTTTAAAATTAAAATAA    465
                     .||||.||||||||.|||
BPUM_0068___c    448 GCTTTGAAATTAAAGTAA    465


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