Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00141 and BPUM_0066
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:05
# Commandline: needle
# -asequence dna-align/BSNT_00141___lysS.1.24716.seq
# -bsequence dna-align/BPUM_0066___lysS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00141___lysS-BPUM_0066___lysS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00141___lysS-BPUM_0066___lysS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00141___lysS
# 2: BPUM_0066___lysS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1518
# Identity: 1177/1518 (77.5%)
# Similarity: 1177/1518 (77.5%)
# Gaps: 36/1518 ( 2.4%)
# Score: 4552.0
#
#
#=======================================
BSNT_00141___ 1 ATGAGTCAAGAAGAGCATAACCATGAAGAATTGAATGATCAGCTGCAAGT 50
||||||.|.||||.||.|||..|.||||||||.|||||.||..|.||.||
BPUM_0066___l 1 ATGAGTAATGAAGGGCTTAATAACGAAGAATTAAATGACCAATTCCAGGT 50
BSNT_00141___ 51 CAGACGCGATAAAATGAATCAGCTGAGAGATAACGGCATCGATCCATTCG 100
||||||.||.|||||||||.|..|||||||..|.||.||||||||.||||
BPUM_0066___l 51 CAGACGTGACAAAATGAATAAAATGAGAGAAGAAGGTATCGATCCGTTCG 100
BSNT_00141___ 101 GCGCACGTTTTGAAAGAACTCATCAGTCTCAAGAAGTTATTTCGGCATAT 150
|.|.|||.|.|||..|..|||||||.|||..|.||.|||||.|.|.|||.
BPUM_0066___l 101 GTGAACGATATGACCGTTCTCATCAATCTGCACAAATTATTGCTGAATAC 150
BSNT_00141___ 151 CAAGA----TCTAACCAAAGAAGAGTTAGAAGAAAAAGCGATTG---AAG 193
.|.|| ||| ||||||||.||||||||||| |..|| |||
BPUM_0066___l 151 GATGAGTTTTCT----AAAGAAGACTTAGAAGAAAA---GTCTGCACAAG 193
BSNT_00141___ 194 TTACAATCGCAGGCCGCATGATGACAAAACGCGGCAAAGGAAAAGCCGGC 243
|.||.|||||.||.||.|||||||||||.||.||.|||||.|||||.|||
BPUM_0066___l 194 TAACGATCGCTGGACGTATGATGACAAAGCGTGGAAAAGGGAAAGCTGGC 243
BSNT_00141___ 244 TTTGCCCATCTTCAGGATTTAGAAGGCCAAATCCAAATCTACGTAAGAAA 293
|||||.|||.|.||.||.||||||||.|||||||||||||||||..|.||
BPUM_0066___l 244 TTTGCGCATATCCAAGACTTAGAAGGACAAATCCAAATCTACGTTCGTAA 293
BSNT_00141___ 294 AGACAGTGTCGGTGACGACCAATATGAAATCTTCAAGTCTTCTGACCTCG 343
|||.|||||.||.||.||....||||||.|.|||||....||.|||||.|
BPUM_0066___l 294 AGATAGTGTAGGAGAAGAAGCTTATGAATTATTCAAAAGCTCAGACCTAG 343
BSNT_00141___ 344 GTGATCTTATCGGCGTAACCGGAAAAGTCTTCAAAACAAATGTAGGCGAA 393
|.|||.|||||||.|||||.||||.|||.||.|||||.||||||||||||
BPUM_0066___l 344 GCGATATTATCGGTGTAACAGGAACAGTATTTAAAACGAATGTAGGCGAA 393
BSNT_00141___ 394 TTGTCTGTTAAAGCAACTTCCTTTGAATTGCTGACAAAAGCGCTTCGTCC 443
.|.|||.|||||||.|||..||||||..|.||.||||||||.|||||.||
BPUM_0066___l 394 CTTTCTATTAAAGCGACTAGCTTTGAGGTTCTCACAAAAGCACTTCGCCC 443
BSNT_00141___ 444 GCTTCCTGACAAATACCATGGTTTAAAAGACGTTGAGCAGCGCTACCGTC 493
|||||||||||||||.|||||..|.|||||.||.||.||.|||||.||||
BPUM_0066___l 444 GCTTCCTGACAAATATCATGGACTTAAAGATGTCGAACAACGCTATCGTC 493
BSNT_00141___ 494 AGCGCTACCTGGATCTTATCGTAAACCCAGACAGCAAACATACGTTTATT 543
||||.|||||.||.||.||.|||||.|||||.||.||.||.|||||.||.
BPUM_0066___l 494 AGCGTTACCTTGACCTGATTGTAAATCCAGAAAGTAAGCAGACGTTCATC 543
BSNT_00141___ 544 ACACGAAGCAAGATCATTCAAGCTATGAGAAGATACCTTGATGATCATGG 593
|..||||||||||||||.|||.||||||||||||||.|.|||..|.|.||
BPUM_0066___l 544 ATGCGAAGCAAGATCATCCAATCTATGAGAAGATACTTAGATTCTAAAGG 593
BSNT_00141___ 594 ATACTTAGAAGTAGAAACACCTACAATGCACAGCATTCCTGGGGGAGCTT 643
||||.|||||||.||||||||.||||||||||||||.|||||.||.||.|
BPUM_0066___l 594 ATACCTAGAAGTTGAAACACCAACAATGCACAGCATCCCTGGTGGTGCAT 643
BSNT_00141___ 644 CTGCACGTCCGTTTATCACTCACCACAACGCGTTAGACATTCCACTCTAT 693
|.||||||||.||.||.|||||.|||||.||..|.||.||.|||||.|||
BPUM_0066___l 644 CAGCACGTCCTTTCATTACTCATCACAATGCACTGGATATGCCACTTTAT 693
BSNT_00141___ 694 ATGCGTATTGCTATCGAACTGCACCTAAAACGTCTAATTGTCGGCGGTTT 743
|||||||||||.||.|||||.|||.|||||||.||.||||||||.|||.|
BPUM_0066___l 694 ATGCGTATTGCGATTGAACTTCACTTAAAACGCCTTATTGTCGGTGGTCT 743
BSNT_00141___ 744 AGAAAAAGTATATGAAATCGGCCGTGTTTTCCGTAACGAAGGTGTCTCTA 793
|||.||.|||||.||.||.||.|||||.|||||||||||||||||.||.|
BPUM_0066___l 744 AGAGAAGGTATACGAGATTGGTCGTGTATTCCGTAACGAAGGTGTATCAA 793
BSNT_00141___ 794 CACGCCATAACCCTGAATTTACAATGATTGAGTTATATGAAGCATATGCG 843
|.||.||||||||.|||||.||.|||||.|||.|.||.|||||.||.||.
BPUM_0066___l 794 CTCGTCATAACCCAGAATTCACTATGATCGAGCTTTACGAAGCTTACGCA 843
BSNT_00141___ 844 GACTATAAAGATATCATGAGCTTAACTGAAAACCTTGTCGCTCATATCGC 893
||.||.|||||.|||||||.|.|||||||||||||..|.||||||||.||
BPUM_0066___l 844 GATTACAAAGACATCATGAACCTAACTGAAAACCTGATTGCTCATATTGC 893
BSNT_00141___ 894 CCAAGAAGTGCTTGGCACAACTACGATTCAATACGGGGAAGAGCAAATCG 943
|.||||.||.||.||.|||||.||.|||||||||||.|||||..||||.|
BPUM_0066___l 894 CGAAGAGGTACTAGGAACAACCACTATTCAATACGGAGAAGATGAAATTG 943
BSNT_00141___ 944 ACCTTAAACCGGAGTGGAAAAGAATCCATATGGTTGACGCAGTCAAAGAA 993
|.||.||.||.||.|||||.|||.|||||||||||||.||||||||||||
BPUM_0066___l 944 ATCTGAAGCCTGAATGGAAGAGACTCCATATGGTTGAAGCAGTCAAAGAA 993
BSNT_00141___ 994 GCGACCGGCGTTGATTTCTGGGAAGAGGTTACTGTTGAACAGGCGCGTGA 1043
||.||.||.||.||.||||||.|.|||.|..||||.|||.|.||||...|
BPUM_0066___l 994 GCAACTGGTGTAGACTTCTGGCAGGAGATGTCTGTAGAAGAAGCGCAGCA 1043
BSNT_00141___ 1044 ATATGCAAAAGAACATGGAGTAGAAATT---AAAGACTCTATGACAGTAG 1090
..|||||...||.||.|||.|.|||||| |||.| ||||||.||||
BPUM_0066___l 1044 GCATGCAGCTGACCACGGAATTGAAATTACGAAAAA---TATGACGGTAG 1090
BSNT_00141___ 1091 GCCATATCATCAACGAATTCTTCGAACAAAAAATTGAAGAAACGCTTATT 1140
|.|||||||||||.||.||||||||.||||||.|.||.||||| |||
BPUM_0066___l 1091 GTCATATCATCAATGAGTTCTTCGAGCAAAAAGTGGAGGAAAC----ATT 1136
BSNT_00141___ 1141 ----CAGCCAACGTTTATTTACGGGCATCCTGTAGAAATTTCTCCTCTTG 1186
|||||.||.|||||||||||.|||||.||.||.||||||||..|.|
BPUM_0066___l 1137 GGTACAGCCTACATTTATTTACGGACATCCAGTGGAGATTTCTCCATTAG 1186
BSNT_00141___ 1187 CTAAGAAAAACCCTGAGGACCCGCGTTTTACAGACCGTTTTGAGCTGTTT 1236
||||||||||.|||||.|||||.||.||.|||||.||.||||||||.|||
BPUM_0066___l 1187 CTAAGAAAAATCCTGAAGACCCTCGCTTCACAGATCGCTTTGAGCTATTT 1236
BSNT_00141___ 1237 ATCGTTGGCCGTGAACATGCCAACGCGTTTACAGAGCTGAATGATCCTAT 1286
|||||..|||||||.|||||.||.||.||.|||||.||.||.|||||.||
BPUM_0066___l 1237 ATCGTACGCCGTGAGCATGCTAATGCATTCACAGAACTAAACGATCCAAT 1286
BSNT_00141___ 1287 TGATCAAAGAGAACGCTTTGAAGCGCAATTAAAAGAGCGTGAAGCCGGTA 1336
.||||||||||||||.||||||||.|||||||||||.|||||||..||.|
BPUM_0066___l 1287 CGATCAAAGAGAACGATTTGAAGCTCAATTAAAAGAACGTGAAGAAGGAA 1336
BSNT_00141___ 1337 ATGATGAAGCTCATCTAATGGATGAAGACTTTGTTGAAGCTCTGGAATAC 1386
||||.|||||.||||||||||||||.||.|||||||||||..|.|||||.
BPUM_0066___l 1337 ATGACGAAGCGCATCTAATGGATGACGATTTTGTTGAAGCATTAGAATAT 1386
BSNT_00141___ 1387 GGTATGCCGCCAACAGGAGGTTTAGGCATCGGTATCGACCGTCTGGTT-- 1434
||||||||.||||||||.||..||||.||||||||||||| ||||
BPUM_0066___l 1387 GGTATGCCTCCAACAGGCGGACTAGGAATCGGTATCGACC----GGTTAA 1432
BSNT_00141___ 1435 --ATGCTGCTGACGAATGCCCCTTCTATTCGCGATGTGCTGTTATTCCCG 1482
|||||..|.||.|||.|.||.||.||..|.|||||.|||.|.||||||
BPUM_0066___l 1433 TCATGCTATTAACAAATTCTCCATCAATCAGAGATGTACTGCTTTTCCCG 1482
BSNT_00141___ 1483 CAAATGAGACAACGCTAA 1500
|||||||||.|.||||||
BPUM_0066___l 1483 CAAATGAGAAACCGCTAA 1500
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.