Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00136 and BPUM_0063

See Amino acid alignment / Visit BSNT_00136 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:05
# Commandline: needle
#    -asequence dna-align/BSNT_00136___folK.1.24716.seq
#    -bsequence dna-align/BPUM_0063___folK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00136___folK-BPUM_0063___folK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00136___folK-BPUM_0063___folK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00136___folK
# 2: BPUM_0063___folK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 538
# Identity:     363/538 (67.5%)
# Similarity:   363/538 (67.5%)
# Gaps:          68/538 (12.6%)
# Score: 1191.5
# 
#
#=======================================

BSNT_00136___      1 ATGAACAACATAGCTTATATTGCACTTGGATCTAATATTGGAGATAGA-G     49
                     ||||||||.|..||.||.|||||..|.||.||.||.||.|| ||.|.| |
BPUM_0063___f      1 ATGAACAATACCGCATACATTGCTTTAGGTTCGAACATAGG-GAAAAAGG     49

BSNT_00136___     50 AAACGTATTTAAGGCAAGCAGTGGCTTC-----ACTGCATCAGCATGCTG     94
                     ||||.|||||||...||||     |.||     |||.||..|.|||.|.|
BPUM_0063___f     50 AAACTTATTTAAAAGAAGC-----CGTCAAAAAACTACACGAACATCCAG     94

BSNT_00136___     95 CGGTGACAGTCACTAAAG------TGTCGTCTATTTACGAAACTGAC-CC    137
                     .|||...|||      ||      |.||.|||||.||.||||| .|| ||
BPUM_0063___f     95 AGGTTCAAGT------AGAATCGATCTCTTCTATATATGAAAC-AACACC    137

BSNT_00136___    138 GGTCGGATACGAAGATCAAGCTCAATTTTTGAATATGGCTGTTGAAATCA    187
                     .||.||.||||||.|.||||.|.|.|||||.|||||||||||..||||  
BPUM_0063___f    138 TGTAGGTTACGAAAACCAAGATGACTTTTTAAATATGGCTGTGAAAAT--    185

BSNT_00136___    188 AGACATCATTGAACC---CTT-------TTGAACTCCTTGAACTGACGCA    227
                             ||..|||   |||       .||||.|.||.|.|||.||.||
BPUM_0063___f    186 --------TTCCACCTCGCTTCGTCCAAATGAATTACTGGCACTTACTCA    227

BSNT_00136___    228 GCAGATAGAAAATGAATTAGGCAGAACAAGGGAAGTAAGATGGGGGCCGC    277
                     |.|.||.||..|.||.|||||||||||.||.|||||.||||||||.||.|
BPUM_0063___f    228 GAAAATCGAGCAAGAGTTAGGCAGAACGAGAGAAGTGAGATGGGGACCAC    277

BSNT_00136___    278 GGACGGCAGACCTTGACATTTTGTTATTTAATCGTGAAAATATTGAATCA    327
                     |.|||||.||||||||||||||..|.|.|||||||||||||||||||.||
BPUM_0063___f    278 GAACGGCTGACCTTGACATTTTACTTTATAATCGTGAAAATATTGAAACA    327

BSNT_00136___    328 GAGCAACTAATTGTTCCGCATCCGAGAATGTATGAGCGTTTGTTTGTCCT    377
                     ||.||.||..|.||.||.|||||.||||||||.||.|||||.||.||.||
BPUM_0063___f    328 GAACAGCTCGTAGTGCCACATCCTAGAATGTACGAACGTTTATTCGTTCT    377

BSNT_00136___    378 TGCGCCGCTTGCG-GAAATTTGCCAGCAGGTTGAAA------AAGAGGCT    420
                     .|..||| .||.| ||.|||||||.|      ||||      |||    |
BPUM_0063___f    378 CGTTCCG-ATGAGTGAGATTTGCCCG------GAAATCGGCGAAG----T    416

BSNT_00136___    421 AC----AAGCGCCGAAACAGACCAAGAAGGTGTAAGAGTATGGAAGCAGA    466
                     ||    ||..||||.|||||||||||||||||||||..|||||||..|||
BPUM_0063___f    417 ACAAATAAATGCCGTAACAGACCAAGAAGGTGTAAGCATATGGAAAAAGA    466

BSNT_00136___    467 AATCTGGGGTAGACGAATTCGTGCATTCAGAAAGCTGA    504
                     ..|.|||||||||.||||||||||||.|.|||||||.|
BPUM_0063___f    467 CGTGTGGGGTAGAAGAATTCGTGCATACCGAAAGCTAA    504


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