Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00128 and BPUM_0057

See Amino acid alignment / Visit BSNT_00128 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:04
# Commandline: needle
#    -asequence dna-align/BSNT_00128___cysK.1.24716.seq
#    -bsequence dna-align/BPUM_0057___cysK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00128___cysK-BPUM_0057___cysK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00128___cysK-BPUM_0057___cysK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00128___cysK
# 2: BPUM_0057___cysK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 940
# Identity:     707/940 (75.2%)
# Similarity:   707/940 (75.2%)
# Gaps:          29/940 ( 3.1%)
# Score: 2619.0
# 
#
#=======================================

BSNT_00128___      1 ATGGTACGTGTAGCAAACTCCATTACTGAATTAATTGGGAATACGCCAAT     50
                     ||||..|||.|.|||||.||..||..||||.||||.||.|||||.|||.|
BPUM_0057___c      1 ATGGCTCGTATTGCAAATTCAGTTTTTGAACTAATAGGAAATACACCAGT     50

BSNT_00128___     51 CGTTAAATTAAATCGCCTTGCAGATGAAAACAGTGCGGATGTATATCTAA    100
                     ||||||||||||.||..|.|.|||||||.|||||||||||||.||..|.|
BPUM_0057___c     51 CGTTAAATTAAACCGTTTAGTAGATGAAGACAGTGCGGATGTCTACTTGA    100

BSNT_00128___    101 AACTTGAATACATGAACCCTGGAAGCAGTGTAAAAGACCGTATCGGTTTA    150
                     ||||||||||.||||||||.||.||||||||||||||.||.||.|..|||
BPUM_0057___c    101 AACTTGAATATATGAACCCAGGCAGCAGTGTAAAAGATCGCATTGCGTTA    150

BSNT_00128___    151 GCCATGATTGAAGCGGCTGAAAAAGAAGGAAAATTAAAAGCCGGTGATAC    200
                     ||.|||||.||||..||||||....||||.|..|||||||||||.||.||
BPUM_0057___c    151 GCGATGATCGAAGATGCTGAAGCGAAAGGTACTTTAAAAGCCGGCGACAC    200

BSNT_00128___    201 GATCATTGAACCGACAAGCGGAAATACAGGAATCGGGCTTGCAATGGTTG    250
                     |.||||||||||.|||||||||||.||.||.|||||.|||||||||||.|
BPUM_0057___c    201 GCTCATTGAACCAACAAGCGGAAACACTGGGATCGGTCTTGCAATGGTAG    250

BSNT_00128___    251 CTGCTGCTAAAGGATTAAAAGCCATTTTGGTTATGCCTGATACAATGAG-    299
                     |.||.|||||||||.|.||.||||||.|.||.|||||.||.|||||||| 
BPUM_0057___c    251 CGGCAGCTAAAGGAATTAACGCCATTCTAGTGATGCCAGACACAATGAGT    300

BSNT_00128___    300 CATGGAGCGCCGCAACCTTCTTCGTGCATACGGTGCTGAGCTTGTGCTGA    349
                     || ||||||.|||||||||.|.||.||.||.|||||.||||||||..|.|
BPUM_0057___c    301 CA-GGAGCGTCGCAACCTTTTACGCGCTTATGGTGCAGAGCTTGTATTAA    349

BSNT_00128___    350 CTCCTGGTGCGGAAGGCATGAAAGGCGCCATTAAGAAAGCTGAAGAGCTT    399
                     |.||.|||||.|||||.||||||||||||||.||.||.||.|||||..|.
BPUM_0057___c    350 CACCGGGTGCAGAAGGAATGAAAGGCGCCATCAAAAAGGCAGAAGAATTG    399

BSNT_00128___    400 GCTGAAAAGCACGGATATTTTGTGCCTCAGCAGTTTAACAAC----CCTT    445
                     ||.|||.|||||||.||.||..||||||||||.||||.||||    ||  
BPUM_0057___c    400 GCAGAAGAGCACGGTTACTTCATGCCTCAGCAATTTAGCAACGAAGCC--    447

BSNT_00128___    446 CTAACCCAGAAATTCACCGCCAAACAACAGGTAAAGAAATCGTTGAGCAA    495
                       ||..||||.||||||||.|..||.|||||.||||||||..||||.||.
BPUM_0057___c    448 --AATGCAGAGATTCACCGTCGTACGACAGGAAAAGAAATTCTTGAACAG    495

BSNT_00128___    496 TTCGGTGATGACCAGCTTGACGCATTTGTAGCTGGAATCGGAACGGGCGG    545
                     ||   |||.|.|.|||||||.||||||.|.||.||..|.||.||||||||
BPUM_0057___c    496 TT---TGACGGCGAGCTTGATGCATTTATTGCAGGTGTTGGGACGGGCGG    542

BSNT_00128___    546 AACGATTACGGGAGCGGGCGAAGTGCTGAAGGAAGCGTACCCTTCCATTA    595
                     .||.|||||.||.||.||.|||||..|.||.|||||...|||.||.|||.
BPUM_0057___c    543 CACAATTACAGGTGCTGGTGAAGTCTTAAAAGAAGCCATCCCATCAATTC    592

BSNT_00128___    596 AGATTTATGCTGTTGAACCGTCAGATTCCCCAGTGCTTTCAGGAGGAAAA    645
                     ||.|||||||.||.||.|||.|||||||.||.||..|.|||||.|||||.
BPUM_0057___c    593 AGCTTTATGCGGTAGAGCCGACAGATTCACCTGTATTATCAGGCGGAAAG    642

BSNT_00128___    646 CCAGGCCCCCACAAAATTCAGGGAATCGGAGCTGG----ATTCGTGCCGG    691
                     ||||||||.||.|||||.||.||.||.|||||.||    ||||.|.|   
BPUM_0057___c    643 CCAGGCCCGCATAAAATCCAAGGGATTGGAGCAGGTTTTATTCCTTC---    689

BSNT_00128___    692 ACATCTTAAACACTGAAGTATATGATGAAATCTTCCCTGTGAAGAATGAA    741
                      ||||||.|||||.||||||||.||||..||..|||..|||||.||.|||
BPUM_0057___c    690 -CATCTTGAACACGGAAGTATACGATGGTATTATCCAAGTGAAAAACGAA    738

BSNT_00128___    742 GAAGCATTCGAATATGCCCGCAGAGCTGCACGTGAA----GAAGGAATTC    787
                     ||.|||||.||...|||..|.|.|||.||    |||    ||||||||.|
BPUM_0057___c    739 GATGCATTTGAGCTTGCAAGAAAAGCAGC----GAAAGAGGAAGGAATCC    784

BSNT_00128___    788 TCGGAGGCATCTCATCAGGTGCTGCAATTTATGCTGCTCTTCAAGTAGCA    837
                     |.||.||.||.||.|||||.||.||.||||||||.||.||||||..|||.
BPUM_0057___c    785 TTGGCGGTATTTCTTCAGGAGCAGCCATTTATGCAGCACTTCAAACAGCG    834

BSNT_00128___    838 AAAAAACTCGGAAAAGGCAAAAAAGTATTGGCCATCATTCCAAGTAACGG    887
                     ||.|||||.||.|||||.|||||.||..|.||.|||||.||||||||.||
BPUM_0057___c    835 AAGAAACTTGGTAAAGGGAAAAAGGTTCTCGCAATCATCCCAAGTAATGG    884

BSNT_00128___    888 CGAACGTTATCTAAGCACGCCGCTGTATCAATTCGATTAA    927
                     .||.|||||.||.|||||.||.||.|||||||||||||||
BPUM_0057___c    885 GGAGCGTTACCTCAGCACACCTCTTTATCAATTCGATTAA    924


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