Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00123 and BPUM_0054

See Amino acid alignment / Visit BSNT_00123 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:04
# Commandline: needle
#    -asequence dna-align/BSNT_00123___yacB.1.24716.seq
#    -bsequence dna-align/BPUM_0054___yacB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00123___yacB-BPUM_0054___yacB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00123___yacB-BPUM_0054___yacB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00123___yacB
# 2: BPUM_0054___yacB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity:     571/793 (72.0%)
# Similarity:   571/793 (72.0%)
# Gaps:          44/793 ( 5.5%)
# Score: 2057.0
# 
#
#=======================================

BSNT_00123___      1 ------------------------GTGGGGAACACCAATACTGTACTTGG     26
                                             ||.||||||||.|||||.||..|.||
BPUM_0054___y      1 ATGAAGTTGTTACTGGTGATAGATGTAGGGAACACAAATACCGTTTTAGG     50

BSNT_00123___     27 TGTATATCATGATGGAAAATTAGAATATCACTGGCGTATAGAAACAAGCA     76
                     |||.||||||.||||..|..||.|.||.||.|||||.||.|||||||||.
BPUM_0054___y     51 TGTTTATCATAATGGCGATCTAAACTACCATTGGCGAATTGAAACAAGCC    100

BSNT_00123___     77 GGCATAAAACAGAAGATGAGTTTGGGATG---ATTTTGCGCTCCTTATTT    123
                     |.|||||||||||||||||.|||||.|||   |||   .|.||.||||||
BPUM_0054___y    101 GTCATAAAACAGAAGATGAATTTGGTATGGCCATT---AGGTCTTTATTT    147

BSNT_00123___    124 GATCACTCCGGGCTTATGTTTGAACAGATAGATGGCATTATTATTTCGTC    173
                     |||.|...|||.||.||||||||.||.|||||.||||||||.||.|||||
BPUM_0054___y    148 GATTATGTCGGCCTAATGTTTGACCAAATAGAAGGCATTATCATATCGTC    197

BSNT_00123___    174 AGTAGTGCCGCCAATCATGTTTGCGTTAGAAAGAATGTGCACAAAATACT    223
                     .||.||.||||||||.||||||||.|||||||||||||||...||.||||
BPUM_0054___y    198 TGTTGTCCCGCCAATGATGTTTGCATTAGAAAGAATGTGCGAGAAGTACT    247

BSNT_00123___    224 TTCATATCGAGCCTCAAATTGTTGGTCCAGGTATGAAAACCGGTTTAAAT    273
                     ||||.||....||.||||||||.||.||.||.|||||.||.||.|||||.
BPUM_0054___y    248 TTCACATAACTCCCCAAATTGTAGGGCCTGGAATGAAGACTGGATTAAAC    297

BSNT_00123___    274 ATAAAATATGACAATCCGAAAGAAGTGGGGGCAGACAGAATCGTAAATGC    323
                     ||.|..|.|||||||||.||.|||||.|||||.||..||||.||.|||||
BPUM_0054___y    298 ATTATGTGTGACAATCCAAAGGAAGTCGGGGCTGATCGAATTGTGAATGC    347

BSNT_00123___    324 TGTCGCTGCGATACAC--TTGTACGGCAATCCATTAATTGTTGTCGATTT    371
                     .||.||.|||||.|||  ||.|..||||  ||..|.|||||.||.||.||
BPUM_0054___y    348 CGTAGCGGCGATTCACCTTTATGGGGCA--CCGCTCATTGTCGTAGACTT    395

BSNT_00123___    372 CGGAACCGCCACAACGTACTGCTATATTGATGAAAACAAACAATACATGG    421
                     .||.||.||.|||||.|||||||||||..|||||.|.|||||||||||||
BPUM_0054___y    396 TGGTACAGCGACAACCTACTGCTATATCAATGAACAAAAACAATACATGG    445

BSNT_00123___    422 GCGGGGCGATTGCCCCTGGGATTACAATTTCGACAGAGGCGCTTTACTCG    471
                     |.|||||||||||.|||||.|||||.||.||.||||||||..|.||..|.
BPUM_0054___y    446 GTGGGGCGATTGCACCTGGTATTACCATCTCAACAGAGGCTTTATATACA    495

BSNT_00123___    472 CGTGCAGCAAAGCTTCCGCGTATCGAAATCACCCGGCCCGACAATATTAT    521
                     .|.||.|||||.||.|||.|.||.|||||...|||.||.||..|.|||.|
BPUM_0054___y    496 AGAGCGGCAAAACTGCCGAGAATTGAAATTGTCCGTCCAGATCACATTGT    545

BSNT_00123___    522 CGGAAAAAACACTGTTAGCGCGATGCAATCTGGGAT--TTTATTTGGCTA    569
                     .|||||||||||..||||.||||||||||||||.||  ||||  |||.||
BPUM_0054___y    546 TGGAAAAAACACCATTAGTGCGATGCAATCTGGCATCCTTTA--TGGATA    593

BSNT_00123___    570 TGTCGGCCAAGTGGAAGGAATCGTTAAGCGAATGAAATGGCAGGCAAAAC    619
                     |||.||.|||||.||.|||||.||.||.||.|||||...|||.||.||||
BPUM_0054___y    594 TGTTGGGCAAGTCGAGGGAATAGTGAAACGGATGAAGCAGCAAGCGAAAC    643

BSNT_00123___    620 AGGAACCAAAGGTCATTGCGACAGGAGGCCTGGCGCCGCTCATTGCGAAC    669
                     |...|||.||.||||||||.|||||.||..||.||.|..|.||||..||.
BPUM_0054___y    644 AAACACCGAAAGTCATTGCAACAGGCGGTTTGTCGACATTGATTGGAAAT    693

BSNT_00123___    670 GAATCAGATTGTATAGACATCGTTGATCCATTCTTAACCCTAAAAGGGCT    719
                     ||||||||.||.||.||.||.||.|||||.||||||||..||||.||.||
BPUM_0054___y    694 GAATCAGACTGCATTGATATTGTCGATCCGTTCTTAACATTAAAGGGACT    743

BSNT_00123___    720 GGAATTGATTTATGAAAGAAACCGCGTAGGAAGTG---TATAG    759
                     ..||.|.|||||||||.|.||.||.||.|   |||   |||||
BPUM_0054___y    744 TCAACTCATTTATGAACGTAATCGTGTCG---GTGTATTATAG    783


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00123 and BPUM_0054

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
