Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00119 and BPUM_0051
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:04
# Commandline: needle
# -asequence dna-align/BSNT_00119___yacA.1.24716.seq
# -bsequence dna-align/BPUM_0051___tilS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00119___yacA-BPUM_0051___tilS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00119___yacA-BPUM_0051___tilS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00119___yacA
# 2: BPUM_0051___tilS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1545
# Identity: 980/1545 (63.4%)
# Similarity: 980/1545 (63.4%)
# Gaps: 267/1545 (17.3%)
# Score: 2833.5
#
#
#=======================================
BSNT_00119___ 1 GTGAA---AAGTGTCAAAGATTTTTTAAACAAACACAAT-CTTACGTT-A 45
||||| ||.|| ||..||||||.||| |||||..|| .||||.|| |
BPUM_0051___t 1 GTGAATAGAATTG--AATCATTTTTGAAA-AAACATGATGTTTACCTTGA 47
BSNT_00119___ 46 AAAGGGGCGACAATCATTGTAGGCGTTTCTGGCGGTCCGGACTCAATGGC 95
||| ..|||||.|||||||.||.|||||||||||.||.||.||.|| ||
BPUM_0051___t 48 AAA--TACGACAGTCATTGTCGGGGTTTCTGGCGGACCAGATTCCAT-GC 94
BSNT_00119___ 96 TCTT-CTTCACG-----------CGTTGCATACGTTATGCGGCCGTTCAG 133
|.|| ||.||.| |||.|.|.|.||| ||.|||||
BPUM_0051___t 95 TTTTGCTGCATGAACTAAACAAACGTCGAAAAGGTT------CCTTTCAG 138
BSNT_00119___ 134 CGAATGTTATTGCAGCTCACGTTGACCATCGGTTCAGAGGTGCGGAATCC 183
| |.||||||||.||.||.||.||...|||||||||.|..||||||
BPUM_0051___t 139 C-----TGATTGCAGCCCATGTAGATCACATGTTCAGAGGAGAAGAATCC 183
BSNT_00119___ 184 GAGGAGGACATGCGTTTTGTCCAAGCTTATTGTAAAGCTGAACAGC---- 229
...|..||..||...|||||..|.||.||.||.||.| |||
BPUM_0051___t 184 TTTGTTGATTTGGCATTTGTTGAGGCATACTGCAAGG------AGCAAGG 227
BSNT_00119___ 230 ---TCGTGTGCGAAACGGCTCAAAT-CAATGTAACCGCATATGCACAGGA 275
||.| |..|||.||||.|..|| ||| ||.|||..|||||||.|.|
BPUM_0051___t 228 AATTCCT-TTTGAATCGGCCCGCATACAA-GTTACCCAATATGCAAAAG- 274
BSNT_00119___ 276 AAAAGGAC-TCAATAAGCAGGCTGCAGCACGTGATTGCCGCTACCAGTTT 324
||||..|| |.||.||.|||||.||.|||.|.||.|||.|.||....||.
BPUM_0051___t 275 AAAACCACTTAAACAAACAGGCAGCTGCAAGAGAGTGCAGATATGCTTTC 324
BSNT_00119___ 325 TTTGAAGAAATCATGTCGAAGC---ACCAAGCGGACTATCTAGCTCTTGC 371
|||....||.|.|| |.||| ||.||||..|.|.|.||||.|||||
BPUM_0051___t 325 TTTCGTCAATTGAT---GGAGCGATACAAAGCTCAATTTATAGCGCTTGC 371
BSNT_00119___ 372 GCATCATGGTGATGACCAGGTTGAAACAATGCTTATGAAACTGGCTA-AG 420
.||||||||.||.|||||.||.|||||||||.|.|||...||.||.| ||
BPUM_0051___t 372 ACATCATGGGGACGACCAAGTAGAAACAATGATGATGCGGCTTGCGAGAG 421
BSNT_00119___ 421 GGTACGCTTGGAACGGGACTTGCGGGAATGC-AGCCGGTTAGACG----T 465
|| ||..||||||..||||||||.||.||.| ||| .|.||| |
BPUM_0051___t 422 GG-ACTGTTGGAATAGGACTTGCCGGTATCCAAGC----AAAACGTCCTT 466
BSNT_00119___ 466 TTTGGGACGG--GGCGGATCATCAGGCCGTTC-TTAACCATTACAAAGGA 512
.|...||.|| |||.||| || |||||.|| ||....||| |.|||||
BPUM_0051___t 467 ATCAAGATGGATGGCTGAT--TC-GGCCGCTCATTGGATATT-CCAAGGA 512
BSNT_00119___ 513 AGA------GATC-CTTCACTATTGCCGTGAAAACGGTTTGAGC-----T 550
.|| ||.| ||| |||||.| ||| |
BPUM_0051___t 513 TGACGTGCTGACCGCTT----------GTGAACA-------AGCACATAT 545
BSNT_00119___ 551 ACCGGACG-----GATGAAAGCAACGCCAAAGATGACTACACAAGAAACA 595
.||..|.| |||.||||.||...||.||||||||||...||||||.
BPUM_0051___t 546 TCCCTATGTCATTGATCAAAGTAATCACACAGATGACTACTTGAGAAACC 595
BSNT_00119___ 596 GATTCAGAA-AAACAGTGCTCCCGTTTT---TGAAGCAGGAATCTCCGGA 641
|..|.|||| |.|||.|..||||||.|| .|||| |||.|.||| |
BPUM_0051___t 596 GGATAAGAAGACACATTCTTCCCGTGTTAAAAGAAG-AGGCACCTC---A 641
BSNT_00119___ 642 TGTGCATAAAAGGTTTCAGAAAGTGAGTGAAGCA--CTGACGGAAGATGA 689
|||.|||.||||.||||||...||.||||| || |||||.||||||||
BPUM_0051___t 642 TGTACATGAAAGCTTTCAGTTTGTAAGTGA--CATGCTGACTGAAGATGA 689
BSNT_00119___ 690 GCAATTCTTACAGTCATTAACGAAAGATGAAATGAATAAAGTAATCACAA 739
|||||.|||.|||.|||||||.||.||..|||||||..||||.||.||.|
BPUM_0051___t 690 GCAATACTTGCAGGCATTAACAAAGGAACAAATGAACCAAGTGATAACGA 739
BSNT_00119___ 740 GCCA---GTCTAATACA---TCAGTTGAAATCAATTCCTCTCAATTGCTT 783
..|| |.|||| .|| |.||.|.|||.|.|..||| ||||||
BPUM_0051___t 740 ATCAATCGCCTAA-GCAAATTAAGATTAAAACGAAGCCT-----TTGCTT 783
BSNT_00119___ 784 GCCCTCCCGATGCCTTTACAAAGAAGAGGAGTTCAACTAATATTAAACTA 833
|.|||.||..|||||||||||||||||||..|||||||||||||||||||
BPUM_0051___t 784 GACCTGCCTTTGCCTTTACAAAGAAGAGGCATTCAACTAATATTAAACTA 833
BSNT_00119___ 834 TCTTTATGAAAACGTTCCATCATCCTTTTCAGCCCATCACATTC--AGCA 881
|||||||||||||..||.||||.|.||||||..|||.||.|||| .|.|
BPUM_0051___t 834 TCTTTATGAAAACACTCAATCAGCGTTTTCAAACCAGCATATTCTAGGGA 883
BSNT_00119___ 882 GTTTCTCGATTGG---------GCGGAA-AATGGCAGTCCTTCAGGAGTA 921
.|| |.||.||| .|.||| || ||.||.|||..|
BPUM_0051___t 884 CTT--TGGACTGGTTATCTCATACTGAACAA-------CCGTCTGGATCA 924
BSNT_00119___ 922 CTGGACTTTCCGAAAGG---ACTGAAGGTGGTCAAATCATATCA-GACAT 967
.|.||.||.||.||||| || |||.| ||||||||.|||.| .|| |
BPUM_0051___t 925 TTAGATTTGCCAAAAGGTTTAC--AAGCT-GTCAAATCTTATGATTAC-T 970
BSNT_00119___ 968 GTTTGTTTACATTTGAACAATGGC-AGTGCAAAA--------ATG---TT 1005
||.|||||||.|||||||.||.|| .||.|.|.| ||| ||
BPUM_0051___t 971 GTATGTTTACCTTTGAACGATCGCTTGTACTAGACCAGTCTTATGCTCTT 1020
BSNT_00119___ 1006 CCCTTTGAATACCAAA--------TT--AGCGGAGCTGCTGATGAAACGG 1045
|.||| ||| || ||.||||||
BPUM_0051___t 1021 CACTT--------AAAGGGTGAGGTTGGAGAGGAGCT------------- 1049
BSNT_00119___ 1046 CAGTGCTCCCTAATGGATA-TCTGATAGAGG---CAAGGCATTATGCGGA 1091
..|.||.||.|||||..| ||| ||.|.|| |||..|||..|.||.|
BPUM_0051___t 1050 -TTTCCTTCCAAATGGGCAGTCT-ATCGTGGTATCAAATCATGTTCCGAA 1097
BSNT_00119___ 1092 CTCGCCTGAA--GAACATGGGAATGCTGTTTTTATCACAAGTG--AAAAA 1137
|..||.| |||| ||||..|..|||||.| || ..|||
BPUM_0051___t 1098 ---GGATGCACGGAAC---GGAAACCATTTTTTCT------TGCTTCAAA 1135
BSNT_00119___ 1138 AAGGTGCG-----GTTTCCCTT--AACAATC-CGGACGAGAAAAGCTGGA 1179
|||.| || ||||||||| |.||.|| |..||||.|||| |||.
BPUM_0051___t 1136 AAGAT-CGTGTTCGTTTCCCTTTGATCATTCGCTCACGAAAAAA--TGGT 1182
BSNT_00119___ 1180 GACCGGATCAAACTAAAAGGGATGAACGGCTCAAAAAAGGTAAAGGATAT 1229
||.||.||||||||.|||||||||||.||.|||||||||||.||||||||
BPUM_0051___t 1183 GATCGAATCAAACTTAAAGGGATGAATGGATCAAAAAAGGTGAAGGATAT 1232
BSNT_00119___ 1230 ATTTATTGATAAGAAACTGCCTCTCCAAGAAAGAGACAACTGGCCGATTG 1279
||||||||||||.|||.|||||||...|||||||||||.|||||||||.|
BPUM_0051___t 1233 ATTTATTGATAAAAAAGTGCCTCTTGCAGAAAGAGACAGCTGGCCGATCG 1282
BSNT_00119___ 1280 TGACGGACGCAAGCGG----TGAAATTATCTGGATACCTGGCTTGAAAAA 1325
|.||.||| .||| |.||||.||||||||.||.||..|||||||
BPUM_0051___t 1283 TCACTGAC----TCGGATCATCAAATCATCTGGATCCCAGGTCTGAAAAA 1328
BSNT_00119___ 1326 ATCAATTTTTGAAGATCTTGTGATTCCAAACAGCGACCGCATTGTATTAC 1375
|||..||||||||||..|||..||..||||||||||.|.|||||||||||
BPUM_0051___t 1329 ATCCGTTTTTGAAGAAATTGATATGACAAACAGCGATCTCATTGTATTAC 1378
BSNT_00119___ 1376 AATATAGACAGCATGAAAA-GTGTAGGGGGCAAGCAAAATCATGA 1419
||||||||||||||||||| .|||||
BPUM_0051___t 1379 AATATAGACAGCATGAAAATTTGTAG------------------- 1404
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