Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00119 and BPUM_0051

See Amino acid alignment / Visit BSNT_00119 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:04
# Commandline: needle
#    -asequence dna-align/BSNT_00119___yacA.1.24716.seq
#    -bsequence dna-align/BPUM_0051___tilS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00119___yacA-BPUM_0051___tilS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00119___yacA-BPUM_0051___tilS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00119___yacA
# 2: BPUM_0051___tilS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1545
# Identity:     980/1545 (63.4%)
# Similarity:   980/1545 (63.4%)
# Gaps:         267/1545 (17.3%)
# Score: 2833.5
# 
#
#=======================================

BSNT_00119___      1 GTGAA---AAGTGTCAAAGATTTTTTAAACAAACACAAT-CTTACGTT-A     45
                     |||||   ||.||  ||..||||||.||| |||||..|| .||||.|| |
BPUM_0051___t      1 GTGAATAGAATTG--AATCATTTTTGAAA-AAACATGATGTTTACCTTGA     47

BSNT_00119___     46 AAAGGGGCGACAATCATTGTAGGCGTTTCTGGCGGTCCGGACTCAATGGC     95
                     |||  ..|||||.|||||||.||.|||||||||||.||.||.||.|| ||
BPUM_0051___t     48 AAA--TACGACAGTCATTGTCGGGGTTTCTGGCGGACCAGATTCCAT-GC     94

BSNT_00119___     96 TCTT-CTTCACG-----------CGTTGCATACGTTATGCGGCCGTTCAG    133
                     |.|| ||.||.|           |||.|.|.|.|||      ||.|||||
BPUM_0051___t     95 TTTTGCTGCATGAACTAAACAAACGTCGAAAAGGTT------CCTTTCAG    138

BSNT_00119___    134 CGAATGTTATTGCAGCTCACGTTGACCATCGGTTCAGAGGTGCGGAATCC    183
                     |     |.||||||||.||.||.||.||...|||||||||.|..||||||
BPUM_0051___t    139 C-----TGATTGCAGCCCATGTAGATCACATGTTCAGAGGAGAAGAATCC    183

BSNT_00119___    184 GAGGAGGACATGCGTTTTGTCCAAGCTTATTGTAAAGCTGAACAGC----    229
                     ...|..||..||...|||||..|.||.||.||.||.|      |||    
BPUM_0051___t    184 TTTGTTGATTTGGCATTTGTTGAGGCATACTGCAAGG------AGCAAGG    227

BSNT_00119___    230 ---TCGTGTGCGAAACGGCTCAAAT-CAATGTAACCGCATATGCACAGGA    275
                        ||.| |..|||.||||.|..|| ||| ||.|||..|||||||.|.| 
BPUM_0051___t    228 AATTCCT-TTTGAATCGGCCCGCATACAA-GTTACCCAATATGCAAAAG-    274

BSNT_00119___    276 AAAAGGAC-TCAATAAGCAGGCTGCAGCACGTGATTGCCGCTACCAGTTT    324
                     ||||..|| |.||.||.|||||.||.|||.|.||.|||.|.||....||.
BPUM_0051___t    275 AAAACCACTTAAACAAACAGGCAGCTGCAAGAGAGTGCAGATATGCTTTC    324

BSNT_00119___    325 TTTGAAGAAATCATGTCGAAGC---ACCAAGCGGACTATCTAGCTCTTGC    371
                     |||....||.|.||   |.|||   ||.||||..|.|.|.||||.|||||
BPUM_0051___t    325 TTTCGTCAATTGAT---GGAGCGATACAAAGCTCAATTTATAGCGCTTGC    371

BSNT_00119___    372 GCATCATGGTGATGACCAGGTTGAAACAATGCTTATGAAACTGGCTA-AG    420
                     .||||||||.||.|||||.||.|||||||||.|.|||...||.||.| ||
BPUM_0051___t    372 ACATCATGGGGACGACCAAGTAGAAACAATGATGATGCGGCTTGCGAGAG    421

BSNT_00119___    421 GGTACGCTTGGAACGGGACTTGCGGGAATGC-AGCCGGTTAGACG----T    465
                     || ||..||||||..||||||||.||.||.| |||    .|.|||    |
BPUM_0051___t    422 GG-ACTGTTGGAATAGGACTTGCCGGTATCCAAGC----AAAACGTCCTT    466

BSNT_00119___    466 TTTGGGACGG--GGCGGATCATCAGGCCGTTC-TTAACCATTACAAAGGA    512
                     .|...||.||  |||.|||  || |||||.|| ||....||| |.|||||
BPUM_0051___t    467 ATCAAGATGGATGGCTGAT--TC-GGCCGCTCATTGGATATT-CCAAGGA    512

BSNT_00119___    513 AGA------GATC-CTTCACTATTGCCGTGAAAACGGTTTGAGC-----T    550
                     .||      ||.| |||          |||||.|       |||     |
BPUM_0051___t    513 TGACGTGCTGACCGCTT----------GTGAACA-------AGCACATAT    545

BSNT_00119___    551 ACCGGACG-----GATGAAAGCAACGCCAAAGATGACTACACAAGAAACA    595
                     .||..|.|     |||.||||.||...||.||||||||||...||||||.
BPUM_0051___t    546 TCCCTATGTCATTGATCAAAGTAATCACACAGATGACTACTTGAGAAACC    595

BSNT_00119___    596 GATTCAGAA-AAACAGTGCTCCCGTTTT---TGAAGCAGGAATCTCCGGA    641
                     |..|.|||| |.|||.|..||||||.||   .|||| |||.|.|||   |
BPUM_0051___t    596 GGATAAGAAGACACATTCTTCCCGTGTTAAAAGAAG-AGGCACCTC---A    641

BSNT_00119___    642 TGTGCATAAAAGGTTTCAGAAAGTGAGTGAAGCA--CTGACGGAAGATGA    689
                     |||.|||.||||.||||||...||.|||||  ||  |||||.||||||||
BPUM_0051___t    642 TGTACATGAAAGCTTTCAGTTTGTAAGTGA--CATGCTGACTGAAGATGA    689

BSNT_00119___    690 GCAATTCTTACAGTCATTAACGAAAGATGAAATGAATAAAGTAATCACAA    739
                     |||||.|||.|||.|||||||.||.||..|||||||..||||.||.||.|
BPUM_0051___t    690 GCAATACTTGCAGGCATTAACAAAGGAACAAATGAACCAAGTGATAACGA    739

BSNT_00119___    740 GCCA---GTCTAATACA---TCAGTTGAAATCAATTCCTCTCAATTGCTT    783
                     ..||   |.|||| .||   |.||.|.|||.|.|..|||     ||||||
BPUM_0051___t    740 ATCAATCGCCTAA-GCAAATTAAGATTAAAACGAAGCCT-----TTGCTT    783

BSNT_00119___    784 GCCCTCCCGATGCCTTTACAAAGAAGAGGAGTTCAACTAATATTAAACTA    833
                     |.|||.||..|||||||||||||||||||..|||||||||||||||||||
BPUM_0051___t    784 GACCTGCCTTTGCCTTTACAAAGAAGAGGCATTCAACTAATATTAAACTA    833

BSNT_00119___    834 TCTTTATGAAAACGTTCCATCATCCTTTTCAGCCCATCACATTC--AGCA    881
                     |||||||||||||..||.||||.|.||||||..|||.||.||||  .|.|
BPUM_0051___t    834 TCTTTATGAAAACACTCAATCAGCGTTTTCAAACCAGCATATTCTAGGGA    883

BSNT_00119___    882 GTTTCTCGATTGG---------GCGGAA-AATGGCAGTCCTTCAGGAGTA    921
                     .||  |.||.|||         .|.||| ||       ||.||.|||..|
BPUM_0051___t    884 CTT--TGGACTGGTTATCTCATACTGAACAA-------CCGTCTGGATCA    924

BSNT_00119___    922 CTGGACTTTCCGAAAGG---ACTGAAGGTGGTCAAATCATATCA-GACAT    967
                     .|.||.||.||.|||||   ||  |||.| ||||||||.|||.| .|| |
BPUM_0051___t    925 TTAGATTTGCCAAAAGGTTTAC--AAGCT-GTCAAATCTTATGATTAC-T    970

BSNT_00119___    968 GTTTGTTTACATTTGAACAATGGC-AGTGCAAAA--------ATG---TT   1005
                     ||.|||||||.|||||||.||.|| .||.|.|.|        |||   ||
BPUM_0051___t    971 GTATGTTTACCTTTGAACGATCGCTTGTACTAGACCAGTCTTATGCTCTT   1020

BSNT_00119___   1006 CCCTTTGAATACCAAA--------TT--AGCGGAGCTGCTGATGAAACGG   1045
                     |.|||        |||        ||  ||.||||||             
BPUM_0051___t   1021 CACTT--------AAAGGGTGAGGTTGGAGAGGAGCT-------------   1049

BSNT_00119___   1046 CAGTGCTCCCTAATGGATA-TCTGATAGAGG---CAAGGCATTATGCGGA   1091
                      ..|.||.||.|||||..| ||| ||.|.||   |||..|||..|.||.|
BPUM_0051___t   1050 -TTTCCTTCCAAATGGGCAGTCT-ATCGTGGTATCAAATCATGTTCCGAA   1097

BSNT_00119___   1092 CTCGCCTGAA--GAACATGGGAATGCTGTTTTTATCACAAGTG--AAAAA   1137
                        |..||.|  ||||   ||||..|..|||||.|      ||  ..|||
BPUM_0051___t   1098 ---GGATGCACGGAAC---GGAAACCATTTTTTCT------TGCTTCAAA   1135

BSNT_00119___   1138 AAGGTGCG-----GTTTCCCTT--AACAATC-CGGACGAGAAAAGCTGGA   1179
                     |||.| ||     |||||||||  |.||.|| |..||||.||||  |||.
BPUM_0051___t   1136 AAGAT-CGTGTTCGTTTCCCTTTGATCATTCGCTCACGAAAAAA--TGGT   1182

BSNT_00119___   1180 GACCGGATCAAACTAAAAGGGATGAACGGCTCAAAAAAGGTAAAGGATAT   1229
                     ||.||.||||||||.|||||||||||.||.|||||||||||.||||||||
BPUM_0051___t   1183 GATCGAATCAAACTTAAAGGGATGAATGGATCAAAAAAGGTGAAGGATAT   1232

BSNT_00119___   1230 ATTTATTGATAAGAAACTGCCTCTCCAAGAAAGAGACAACTGGCCGATTG   1279
                     ||||||||||||.|||.|||||||...|||||||||||.|||||||||.|
BPUM_0051___t   1233 ATTTATTGATAAAAAAGTGCCTCTTGCAGAAAGAGACAGCTGGCCGATCG   1282

BSNT_00119___   1280 TGACGGACGCAAGCGG----TGAAATTATCTGGATACCTGGCTTGAAAAA   1325
                     |.||.|||    .|||    |.||||.||||||||.||.||..|||||||
BPUM_0051___t   1283 TCACTGAC----TCGGATCATCAAATCATCTGGATCCCAGGTCTGAAAAA   1328

BSNT_00119___   1326 ATCAATTTTTGAAGATCTTGTGATTCCAAACAGCGACCGCATTGTATTAC   1375
                     |||..||||||||||..|||..||..||||||||||.|.|||||||||||
BPUM_0051___t   1329 ATCCGTTTTTGAAGAAATTGATATGACAAACAGCGATCTCATTGTATTAC   1378

BSNT_00119___   1376 AATATAGACAGCATGAAAA-GTGTAGGGGGCAAGCAAAATCATGA   1419
                     ||||||||||||||||||| .|||||                   
BPUM_0051___t   1379 AATATAGACAGCATGAAAATTTGTAG-------------------   1404


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