Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00104 and BPUM_0047
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:03
# Commandline: needle
# -asequence dna-align/BSNT_00104___yabR.1.24716.seq
# -bsequence dna-align/BPUM_0047___yabR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00104___yabR-BPUM_0047___yabR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00104___yabR-BPUM_0047___yabR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00104___yabR
# 2: BPUM_0047___yabR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity: 335/399 (84.0%)
# Similarity: 335/399 (84.0%)
# Gaps: 12/399 ( 3.0%)
# Score: 1442.0
#
#
#=======================================
BSNT_00104___ 1 ATGTCGATTGAAGTTGGCAGCAAGTTGCAAGGGAAAATTACAGGTATTAC 50
||||||||||||||||||||||||||.|||||||||.||||.||.|||||
BPUM_0047___y 1 ATGTCGATTGAAGTTGGCAGCAAGTTACAAGGGAAAGTTACGGGCATTAC 50
BSNT_00104___ 51 AAATTTTGGAGCATTTGTTGAATTGCCTGGAGGCTCAACCGGTCTCGTTC 100
||||||||||||.|||||.||.|||||.||.||.|||||.||||||||||
BPUM_0047___y 51 AAATTTTGGAGCTTTTGTGGAGTTGCCAGGCGGTTCAACTGGTCTCGTTC 100
BSNT_00104___ 101 ACATTAGTGAGGTAGCTGATAATTATGTCAAAGACATTAACGACCACTTA 150
|.||.|||||||||||.|||||.|||||.|||||.|||||.||.||.|||
BPUM_0047___y 101 ATATCAGTGAGGTAGCCGATAACTATGTAAAAGATATTAATGAGCATTTA 150
BSNT_00104___ 151 AAAGTCGGCGACCAAGTTGAAGTGAAAGTCATCAACGTTGAAAAAGACGG 200
||||||||.||.|||||||||||||||||.||.|||||||||||||||||
BPUM_0047___y 151 AAAGTCGGTGAACAAGTTGAAGTGAAAGTGATTAACGTTGAAAAAGACGG 200
BSNT_00104___ 201 GAAAATTGGTTTATCTATTAAAAAAGCTAAAGACCGTCC---------GC 241
.|||||.||.||.||.|||||||||||.|||||.||||| .|
BPUM_0047___y 201 TAAAATCGGCTTGTCCATTAAAAAAGCAAAAGATCGTCCTCAACAACAAC 250
BSNT_00104___ 242 AAGCCAGACC---TAGAAATGATTTCCGTCCGAAAGAATCTTTTGAACAG 288
||.|.||||| .||||||||||||||||||||.|||||.|||||.||.
BPUM_0047___y 251 AATCAAGACCAAGCAGAAATGATTTCCGTCCGAAGGAATCGTTTGAGCAA 300
BSNT_00104___ 289 AAAATGAATAAGTTTTTAAAAGACAGCGAAGATCGCTTGTCATCTTTAAA 338
||||||||.||.||.||||||||.||.|||||.|||||..||||||||||
BPUM_0047___y 301 AAAATGAACAAATTCTTAAAAGATAGTGAAGACCGCTTAACATCTTTAAA 350
BSNT_00104___ 339 ACGCAATACGGAATCAAAACGTGGAGGGCGCGGAGCAAGAAGAGGATAA 387
|||.||.|||||||||||||||||.||.|||||||||||||||||.|||
BPUM_0047___y 351 ACGTAACACGGAATCAAAACGTGGGGGACGCGGAGCAAGAAGAGGTTAA 399
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